Miyakogusa Predicted Gene
- Lj6g3v0084360.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0084360.2 Non Characterized Hit- tr|I1KTJ9|I1KTJ9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,42.64,2e-19,RRM,RNA
recognition motif domain; RNA recognition motif,RNA recognition motif
domain; RRM_1,RNA reco,CUFF.57495.2
(125 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 223 2e-59
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 106 6e-24
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 97 4e-21
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 96 7e-21
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 96 1e-20
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 91 2e-19
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 91 2e-19
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 88 2e-18
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-18
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-18
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 4e-15
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 4e-15
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-14
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-14
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 2e-14
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 2e-14
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 4e-14
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 5e-14
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 7e-14
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 7e-14
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 69 1e-12
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 68 2e-12
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-12
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-12
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 67 4e-12
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 67 4e-12
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 67 4e-12
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 67 4e-12
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 5e-12
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 66 6e-12
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 66 7e-12
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-11
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 65 2e-11
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 65 2e-11
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 64 3e-11
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 63 5e-11
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-10
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 61 2e-10
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 59 1e-09
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-09
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-09
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 57 5e-09
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 57 5e-09
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 57 5e-09
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 57 6e-09
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 7e-09
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 56 8e-09
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 56 9e-09
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-09
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-08
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-08
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-08
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-08
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-08
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 55 1e-08
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 55 1e-08
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 55 2e-08
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-08
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-08
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-08
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 55 2e-08
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c... 55 2e-08
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c... 55 2e-08
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c... 55 2e-08
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-08
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-08
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 54 3e-08
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 54 3e-08
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 54 3e-08
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-08
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-08
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 54 4e-08
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-08
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 54 5e-08
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 5e-08
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 6e-08
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 6e-08
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-08
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 6e-08
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-08
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 7e-08
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 7e-08
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 7e-08
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 7e-08
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 7e-08
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-08
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 8e-08
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 8e-08
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 8e-08
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 8e-08
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 52 1e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 51 2e-07
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-07
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-07
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-07
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-07
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 51 3e-07
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-07
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-07
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-07
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-07
Medtr1g073000.3 | polyadenylate-binding protein II | HC | chr1:3... 50 4e-07
Medtr1g073000.1 | polyadenylate-binding protein II | HC | chr1:3... 50 4e-07
Medtr1g073000.2 | polyadenylate-binding protein II | HC | chr1:3... 50 4e-07
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 50 7e-07
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 50 7e-07
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 50 7e-07
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 50 7e-07
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 49 8e-07
Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 8e-07
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 9e-07
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 49 9e-07
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 49 1e-06
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 49 1e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-06
Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 48 2e-06
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 48 2e-06
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 48 3e-06
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 3e-06
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 3e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 4e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 47 4e-06
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 47 4e-06
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 47 4e-06
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 47 5e-06
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 47 5e-06
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 46 7e-06
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 46 8e-06
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 46 9e-06
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 46 9e-06
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 223 bits (569), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 116/125 (92%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESL 60
MSCVEDCN VI+NLDGKEF+GRTLRVN SDKPKPKEPLYPETE+KLFVGNL+WTVTSESL
Sbjct: 161 MSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESL 220
Query: 61 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
Q FQE+GTVVGARVL+DGETG+SRGYGFV Y+ +SE++TAL ++NVELEGR +RVSLA
Sbjct: 221 TQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
Query: 121 EGKRS 125
+GKRS
Sbjct: 281 QGKRS 285
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
+T KL+ GNL ++V S L + +EYG+ VLYD +TG+SRG+ FV S +
Sbjct: 110 DTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNA 169
Query: 101 ALISLNNVELEGRAIRVSLAE 121
+ +L+ E GR +RV+ ++
Sbjct: 170 VIQNLDGKEFMGRTLRVNFSD 190
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 106 bits (264), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 80/132 (60%), Gaps = 12/132 (9%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEH---------KLFVGNL 51
MS VE+ + +E +G ++ GR+L VN K PK TE +++V NL
Sbjct: 157 MSTVEEAESAVEKFNGYDYNGRSLVVN---KASPKGSRPERTERAPRTFEPVLRIYVANL 213
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 111
+W V + L QVF E+G +V ARV+YD ETGRSRG+GFV S +E+ A+ +L+ LE
Sbjct: 214 AWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLE 273
Query: 112 GRAIRVSLAEGK 123
GR IRVS+AE +
Sbjct: 274 GRTIRVSVAEDR 285
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P + KLFVGN + V SE L +F + GTV A V+Y+ +T SRG+GFV S E E
Sbjct: 105 PPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAE 164
Query: 100 TALISLNNVELEGRAIRVSLAEGKRS 125
+A+ N + GR++ V+ A K S
Sbjct: 165 SAVEKFNGYDYNGRSLVVNKASPKGS 190
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 76/137 (55%), Gaps = 12/137 (8%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPL------------YPETEHKLFV 48
M E+ I DG + GR+ +VN + PK E L + ++ HK++
Sbjct: 157 MKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYA 216
Query: 49 GNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV 108
GNL W + S+ L F E ++GA+++Y+ + GRSRG+GFV + LE AL ++N V
Sbjct: 217 GNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGV 276
Query: 109 ELEGRAIRVSLAEGKRS 125
E++GR +R++LA + S
Sbjct: 277 EVQGRPLRLNLAAARTS 293
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 29 SDKPKPKEPLYPETEH---KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSR 85
SDKPK E T +L+VGNL +++TS L +F E GTVV ++YD T RSR
Sbjct: 91 SDKPKQDEEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSR 150
Query: 86 GYGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 121
G+ FV E + A+ + ++ GR+ +V+ E
Sbjct: 151 GFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPE 186
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 95.9 bits (237), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDK---PKPKEPLYPETEHKLFVGNLSWTVTS 57
MS E+ + G E GR L VN + P+ ++P + + +VGNL W V +
Sbjct: 170 MSTSEEVERAVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDN 229
Query: 58 ESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 117
SL Q+F E+G V A+V+YD ETGRSRG+GFV S +E+ A+ +L+ GRAIRV
Sbjct: 230 SSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
Query: 118 SLAE 121
++AE
Sbjct: 290 NVAE 293
Score = 72.8 bits (177), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P + K+FVGNL + V SE L Q+F++ GTV A V+Y+ +T RSRG+GFV S E+E
Sbjct: 118 PSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVE 177
Query: 100 TALISLNNVELEGRAIRVSLA 120
A+ + EL+GR + V+ A
Sbjct: 178 RAVNKFSGFELDGRLLTVNKA 198
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKP--------KPKEPLYPETEHKLFVGNLS 52
M VED N E L+G E GR ++VN+++KP + E + ++ +K++VGNL+
Sbjct: 108 MKTVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLA 167
Query: 53 WTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 112
VTS+SL + F E G + A+V T +S G+GFV +S ++E A+ S NN LEG
Sbjct: 168 KNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEG 227
Query: 113 RAIRVSLA 120
+ IRV+ A
Sbjct: 228 QKIRVNKA 235
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KL+VGN+ TV+++ L ++ QE+G V A V+YD + RSR + FV + A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 105 LNNVELEGRAIRVSLAE 121
LN E+ GR I+V++ E
Sbjct: 121 LNGTEIGGREIKVNITE 137
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPL--------YPETEHKLFVGNLS 52
M VED I DG GR ++VN + P + + Y ++ HK++ GNL
Sbjct: 156 MGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLG 215
Query: 53 WTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 112
W +TS+ L + F + ++ A+V+Y+ G+SRGYGFV + ++E AL ++N VE++G
Sbjct: 216 WDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQG 275
Query: 113 RAIRVSLAEGKR 124
R +R+ LA R
Sbjct: 276 RPLRLKLAVDNR 287
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+LFVGNL ++++S L Q+F E G VV +LYD T RSRG+ FV + E A+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 105 LNNVELEGRAIRVSLAE----GKR 124
+ + GRAI+V+ E GKR
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKR 192
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPL--------YPETEHKLFVGNLS 52
M VED I DG GR ++VN + P + + Y ++ HK++ GNL
Sbjct: 156 MGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLG 215
Query: 53 WTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 112
W +TS+ L + F + ++ A+V+Y+ G+SRGYGFV + ++E AL ++N VE++G
Sbjct: 216 WDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQG 275
Query: 113 RAIRVSLAEGKR 124
R +R+ LA R
Sbjct: 276 RPLRLKLAVDNR 287
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+LFVGNL ++++S L Q+F E G VV +LYD T RSRG+ FV + E A+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 105 LNNVELEGRAIRVSLAE----GKR 124
+ + GRAI+V+ E GKR
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKR 192
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 12/115 (10%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEH---------KLFVGNL 51
MS VE+ + +E +G ++ GR+L VN K PK TE +++V NL
Sbjct: 157 MSTVEEAESAVEKFNGYDYNGRSLVVN---KASPKGSRPERTERAPRTFEPVLRIYVANL 213
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN 106
+W V + L QVF E+G +V ARV+YD ETGRSRG+GFV S +E+ A+ +L+
Sbjct: 214 AWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALD 268
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P + KLFVGN + V SE L +F + GTV A V+Y+ +T SRG+GFV S E E
Sbjct: 105 PPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAE 164
Query: 100 TALISLNNVELEGRAIRVSLAEGKRS 125
+A+ N + GR++ V+ A K S
Sbjct: 165 SAVEKFNGYDYNGRSLVVNKASPKGS 190
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 21/131 (16%)
Query: 14 LDGKEFLGRTLRVNLSDKPKPKE---------------PLYP------ETEHKLFVGNLS 52
L+G GR LRVN P P+ P P + ++++ VGNL+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 53 WTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 112
W V + +L +F E G V+ A+V+YD E+GRSRG+GFV +S E+++A+ +L+ +L G
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 113 RAIRVSLAEGK 123
RAIRVS A+ +
Sbjct: 265 RAIRVSPADSR 275
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+LFVGNL ++V S L ++F+ G V V+YD TGRSRG+GFV S +E+E A
Sbjct: 84 QRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQ 143
Query: 104 SLNNVELEGRAIRVS 118
LN ++GR +RV+
Sbjct: 144 QLNGYVVDGRELRVN 158
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 21/131 (16%)
Query: 14 LDGKEFLGRTLRVNLSDKPKPKE---------------PLYP------ETEHKLFVGNLS 52
L+G GR LRVN P P+ P P + ++++ VGNL+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 53 WTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 112
W V + +L +F E G V+ A+V+YD E+GRSRG+GFV +S E+++A+ +L+ +L G
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 113 RAIRVSLAEGK 123
RAIRVS A+ +
Sbjct: 265 RAIRVSPADSR 275
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+LFVGNL ++V S L ++F+ G V V+YD TGRSRG+GFV S +E+E A
Sbjct: 84 QRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQ 143
Query: 104 SLNNVELEGRAIRVS 118
LN ++GR +RV+
Sbjct: 144 QLNGYVVDGRELRVN 158
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
+ E++ FVG L+W +E+L + F +YG +V ++++ D ETGRSRG+GFV ++ +
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 100 TALISLNNVELEGRAIRVSLAE 121
A+ ++N +L+GR I V+ A+
Sbjct: 62 DAIEAMNGQDLDGRNITVNQAQ 83
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
+ E++ FVG L+W +E+L + F +YG +V ++++ D ETGRSRG+GFV ++ +
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 100 TALISLNNVELEGRAIRVSLAE 121
A+ ++N +L+GR I V+ A+
Sbjct: 62 DAIEAMNGQDLDGRNITVNQAQ 83
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 54/82 (65%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
+ E++ FVG L+W SE+L + F +YG ++ ++++ D ETGRSRG+GFV ++ +
Sbjct: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
Query: 100 TALISLNNVELEGRAIRVSLAE 121
A+ +N +++GR I V+ A+
Sbjct: 64 DAIEGMNGQDMDGRNITVNEAQ 85
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ KLF+G LS+ V +SL F YG VV ARV+ D ETGRSRG+GFV ++ E T+
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSE-ESATS 92
Query: 102 LISLNNVELEGRAIRVSLAEGKRS 125
+S++ +L GR IRVS A +++
Sbjct: 93 ALSMDGQDLNGRNIRVSYANDRQA 116
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +S++ L + F YG V+ A+++ D +TGRSRG+GF+ ++ E +AL +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 105 LNNVELEGRAIRVSLA 120
++N EL+GR +RV+ A
Sbjct: 101 MDNKELDGRTVRVNYA 116
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +S++ L + F YG V+ A+++ D +TGRSRG+GF+ ++ E +AL +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 105 LNNVELEGRAIRVSLA 120
++N EL+GR +RV+ A
Sbjct: 101 MDNKELDGRTVRVNYA 116
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 32 PKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVC 91
P + + + KL+VG +S++ L + F YG V+ ARV+ D E GRS+G+GFV
Sbjct: 28 PLAFQAIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVT 87
Query: 92 YSKRSELETALISLNNVELEGRAIRVSLAE 121
++ E AL +++N EL GR +RV+ A+
Sbjct: 88 FATSEEASAALQAMDNQELHGRTVRVNYAQ 117
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 54/82 (65%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
+ E++ FVG L+W S++L Q F ++G + ++V+ D ETGRSRG+GFV +++ +
Sbjct: 4 SDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMR 63
Query: 100 TALISLNNVELEGRAIRVSLAE 121
A+ +N +++GR I V+ A+
Sbjct: 64 DAIEEMNGQDIDGRNITVNEAQ 85
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+KLFVG LSW+V +SL F +G V R++YD ++GR+RG+GFV +S ++A
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 104 SLNNVELEGRAIRVSLA 120
+++ L GR +R++ A
Sbjct: 96 AMDGKALLGRPLRINFA 112
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +S++ SL + F YG V+ AR++ D ETGRSRG+GF+ ++ E +A+ +
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 105 LNNVELEGRAIRVSLA 120
L+ +L GR +RV+ A
Sbjct: 103 LDGQDLHGRRVRVNYA 118
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 68.6 bits (166), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 10 VIENLDGKEFLG--RTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-E 66
V++ +G + G +T R+N + + +H +FVG+L+ VT L + F+
Sbjct: 72 VLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTH 131
Query: 67 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 125
YG+V GA+V+ D TGRS+GYGFV +S SE A+ +N V R +R+S A K++
Sbjct: 132 YGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 190
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 67.8 bits (164), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I L+G+ G++++VN + +E +FVG+LS VT +L F Y +
Sbjct: 100 IVTLNGRNIFGQSIKVNWAYTRGQRED--TSGHFHIFVGDLSPEVTDATLYACFSAYSSC 157
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRSRG+GFV + + E ++A+ L L R IR + A
Sbjct: 158 SDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWA 207
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 67.4 bits (163), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVG +S+ +SL F +YG V+ AR++ D E+GRS+G+GFV Y+ E +A+ +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 105 LNNVELEGRAIRVSLA 120
L+ +L GR + V+ A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 67.4 bits (163), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVG +S+ +SL F +YG V+ AR++ D E+GRS+G+GFV Y+ E +A+ +
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 105 LNNVELEGRAIRVSLA 120
L+ +L GR + V+ A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I L+G+ G+ ++VN + +E + +FVG+LS VT +L F Y +
Sbjct: 116 ILTLNGRHLFGQPIKVNWAYASGQRED--TSGHYNIFVGDLSPEVTDATLFACFSVYQSC 173
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRSRG+GFV + + + ++A+ L L R IR + A
Sbjct: 174 SDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 223
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I L G++ G+ L+VN + +E +FVG+LS VT +L F Y T
Sbjct: 98 IMTLHGRQLYGQALKVNWAYANSSRED--TSGHFNVFVGDLSPEVTDATLFACFSVYTTC 155
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRS+GYGFV + + ++A+ + L R IR + A
Sbjct: 156 SDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 205
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 31 KPKPKEPLYPETE----HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRG 86
+P P L P + ++VGN+ VT + L +VFQ G + G +++ ++
Sbjct: 27 EPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS---- 82
Query: 87 YGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 125
YGFV Y R+ A+++L+ +L G+A++V+ A S
Sbjct: 83 YGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSS 121
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I L G++ G+ L+VN + +E +FVG+LS VT +L F Y T
Sbjct: 114 IMTLHGRQLYGQALKVNWAYANSSRED--TSGHFNVFVGDLSPEVTDATLFACFSVYTTC 171
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRS+GYGFV + + ++A+ + L R IR + A
Sbjct: 172 SDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 221
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 31 KPKPKEPLYPETE----HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRG 86
+P P L P + ++VGN+ VT + L +VFQ G + G +++ ++
Sbjct: 43 EPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS---- 98
Query: 87 YGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 125
YGFV Y R+ A+++L+ +L G+A++V+ A S
Sbjct: 99 YGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSS 137
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 67.0 bits (162), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 11 IENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 70
I L G++ G+ L+VN + +E +FVG+LS VT +L F Y T
Sbjct: 114 IMTLHGRQLYGQALKVNWAYANSSRED--TSGHFNVFVGDLSPEVTDATLFACFSVYTTC 171
Query: 71 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
ARV++D +TGRS+GYGFV + + ++A+ + L R IR + A
Sbjct: 172 SDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 221
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 31 KPKPKEPLYPETE----HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRG 86
+P P L P + ++VGN+ VT + L +VFQ G + G +++ ++
Sbjct: 43 EPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS---- 98
Query: 87 YGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 125
YGFV Y R+ A+++L+ +L G+A++V+ A S
Sbjct: 99 YGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSS 137
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVG LS+ T ++L F YG VV A+V+ D + +S+GYGFV ++ + E E A+
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 105 LNNVELEGRAIRVSLA--EGKRS 125
+N L GR + V A + KRS
Sbjct: 93 MNEKALNGRVVFVDYAKPDTKRS 115
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 66.2 bits (160), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 40 PETEHK-LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 98
P+++H+ +FVGN+ + T E L ++ +E G V+ R++ D ETG+ +GYGF Y+
Sbjct: 24 PQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETA 83
Query: 99 ETALISLNNVELEGRAIRVSLAEGKR 124
+A +L E+ GR +RV AE +
Sbjct: 84 LSARRNLQGYEINGRQLRVDFAENDK 109
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 66.2 bits (160), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L++G L T+ + LIQ+FQ++G +V A+V+ D TG S+GYGFV Y+ + A++++
Sbjct: 453 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAM 512
Query: 106 NNVELEGRAIRVSLA 120
N LEGR I V +A
Sbjct: 513 NGYRLEGRTIAVRVA 527
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 45 KLFVGNL--------SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRS 96
KLF+G + S++ SL + F YG V+ AR++ D ETGRSRG+GF+ ++
Sbjct: 43 KLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVE 102
Query: 97 ELETALISLNNVELEGRAIRVSLA 120
E +A+ +L+ +L GR +RV+ A
Sbjct: 103 EASSAIQALDGQDLHGRRVRVNYA 126
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
T+ +FVG+L+ VT L + F Y +V A+V+YD TGRS+GYGFV + SE
Sbjct: 188 TDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQ 247
Query: 101 ALISLNNVELEGRAIRVSLAEGKRS 125
A+ +N V R +R+ A ++S
Sbjct: 248 AMTQMNGVYCSSRPMRIGAATPRKS 272
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 64.7 bits (156), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
T+ +FVG+L+ VT L + F Y +V A+V+YD TGRS+GYGFV + SE
Sbjct: 188 TDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQ 247
Query: 101 ALISLNNVELEGRAIRVSLAEGKRS 125
A+ +N V R +R+ A ++S
Sbjct: 248 AMTQMNGVYCSSRPMRIGAATPRKS 272
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+FVG+L+ VT L++ F + Y +V A+V++D TGRS+GYGFV + E AL
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+N V RA+R+ A ++S
Sbjct: 249 MNGVFCSSRAMRIGAATPRKS 269
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 63.2 bits (152), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+FVG+L+ VT L++ F + Y +V A+V++D TGRS+GYGFV + E AL
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+N V RA+R+ A ++S
Sbjct: 249 MNGVFCSSRAMRIGAATPRKS 269
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ KLF+G LS+ V +SL F YG VV ARV+ D ETGRSRG+GFV ++ +A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 102 L 102
L
Sbjct: 94 L 94
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 61.2 bits (147), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 46 LFVGNLSWTVTSESLIQVF-QEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+FVG+L+ VT L + F ++ ++ GA+V+ D TGRS+GYGFV + SE A+
Sbjct: 216 VFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTE 275
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
+N V R +RV +A K++
Sbjct: 276 MNGVYCSSRPMRVGVATPKKT 296
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 21 GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDG 79
G+ R+N + ++ ++ +FVG+L+ V+ L +VF+ Y +V GA+V+ D
Sbjct: 144 GQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDR 203
Query: 80 ETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
TGR++GYGFV ++ SE A+ + V R +R+ A K
Sbjct: 204 TTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNK 247
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
+FVGNL VT E L QVF +YG +V ++ +G+ GFV ++ RS E AL L
Sbjct: 276 IFVGNLDPNVTDEHLKQVFTQYGELVHVKI----PSGKR--CGFVQFADRSSAEEALRVL 329
Query: 106 NNVELEGRAIRVS 118
N L G+ +R+S
Sbjct: 330 NGTLLGGQNVRLS 342
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 64
ED + I+ L+ + G+ +RVN + + K + LF+GNL V + L F
Sbjct: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSL----DVGANLFIGNLDPDVDEKLLYDTF 132
Query: 65 QEYGTVV-GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
+G +V +++ D +TG SRG+GF+ Y ++A+ ++N L R I VS A K
Sbjct: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 47 FVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN 106
+VGNL ++ E L ++F + G VV V D T + +GYGFV + + + A+ LN
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 107 NVELEGRAIRVSLA-EGKRS 125
++L G+ IRV+ A + K+S
Sbjct: 88 MIKLYGKPIRVNKASQDKKS 107
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 39 YPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 98
+PE +++LF G+L V + L + F + + ARV+ D TG+++GYGF+ ++ ++L
Sbjct: 127 WPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADL 186
Query: 99 ETALISLNNVELEGRAIRV 117
AL +N + R I++
Sbjct: 187 AAALKEMNGKYVGNRPIKL 205
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSD-----KPKPKEPLYPETEHKLFVGNLSWTV 55
M E ++ + E GR LRV + +P P P E + ++ NL+W
Sbjct: 143 MDSGEGAQAAVDKFNATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKA 202
Query: 56 TSESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRA 114
S L +F E + T V ARV++ G+S GYGFV Y E E A+ +L EL GR
Sbjct: 203 RSTHLRDIFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRP 262
Query: 115 IRVSLAEGK 123
+ V ++E K
Sbjct: 263 LLVKISERK 271
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L V NL W+++ + +F + GTV+ ++ + G+ +GY FV + A+
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEII-KSKDGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 106 NNVELEGRAIRVSLAEG 122
N E+ GR +RV A+G
Sbjct: 157 NATEISGRILRVEFAKG 173
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+H +FVG+L+ VT L + F+ Y +V GA+V+ D TGRS+GYGFV ++ E A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 102 LISLNNVELEGRAIRVSLAEGK 123
+ + V R +R+ A K
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+H +FVG+L+ VT L + F+ Y +V GA+V+ D TGRS+GYGFV ++ E A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 102 LISLNNVELEGRAIRVSLAEGK 123
+ + V R +R+ A K
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+H +FVG+L+ VT L + F+ Y +V GA+V+ D TGRS+GYGFV ++ E A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 102 LISLNNVELEGRAIRVSLAEGK 123
+ + V R +R+ A K
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 56.6 bits (135), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+H +FVG+L+ VT L + F+ Y +V GA+V+ D TGRS+GYGFV ++ E A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 102 LISLNNVELEGRAIRVSLAEGK 123
+ + V R +R+ A K
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNK 235
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FV L+++ T E L + F +YG VV A ++ + R +G+G+V +++ E A I
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 105 LNNVELEGRAIRVSL 119
+N L GR + V +
Sbjct: 93 MNGKILHGRVLYVDM 107
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 55.8 bits (133), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 28 LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGY 87
++D K P P L+VG+L VT L + F E+ T++ ARV D TG+S Y
Sbjct: 1 MTDSEKDAVPASPAA--TLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCY 58
Query: 88 GFVCYSKRSELETALISLNNVELEGRAIRV 117
G+V S E A+ N+ L G+ IRV
Sbjct: 59 GYVNLSSHQEAIRAIELKNHSSLNGKVIRV 88
Score = 53.1 bits (126), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 10/128 (7%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP----LYPETEHK-----LFVGNLSWTV 55
+D +E +DG +F + L V + K +E L+ E K ++V N+ +V
Sbjct: 245 DDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSV 304
Query: 56 TSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAI 115
E L F G V+ A+V+ D + G S+G+GFVC+S E ++ N G+ +
Sbjct: 305 GDEELRDHFSACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPL 363
Query: 116 RVSLAEGK 123
V A+ K
Sbjct: 364 YVDFAQKK 371
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T KLFV LS T+E+L VF YG + A V++D TGRS+GYGFV Y ++ A
Sbjct: 74 TRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY---RHVDGA 130
Query: 102 LISLN--NVELEGRAIRVSLA 120
+++L + +++GR LA
Sbjct: 131 VLALKEPSKKIDGRMTVTQLA 151
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 55.8 bits (133), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW + L Q FQ +G VV A ++ D TGR+RG+GFV ++ S E ++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 105 LNNVELEGRAIRVSLA 120
+ + +GR + A
Sbjct: 65 KHVI--DGRTVEAKKA 78
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ TVT F ++GT+ V+YD T R RG+GF+ Y +E
Sbjct: 102 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V A
Sbjct: 162 KVLHKTFH-ELNGKMVEVKRA 181
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 55.8 bits (133), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW + L Q FQ +G VV A ++ D TGR+RG+GFV ++ S E ++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 105 LNNVELEGRAIRVSLA 120
+ + +GR + A
Sbjct: 65 KHVI--DGRTVEAKKA 78
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ TVT F ++GT+ V+YD T R RG+GF+ Y +E
Sbjct: 102 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V A
Sbjct: 162 KVLHKTFH-ELNGKMVEVKRA 181
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 55.8 bits (133), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW + L Q FQ +G VV A ++ D TGR+RG+GFV ++ S E ++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 105 LNNVELEGRAIRVSLA 120
+ + +GR + A
Sbjct: 65 KHVI--DGRTVEAKKA 78
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ TVT F ++GT+ V+YD T R RG+GF+ Y +E
Sbjct: 102 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V A
Sbjct: 162 KVLHKTFH-ELNGKMVEVKRA 181
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 102 L 102
L
Sbjct: 185 L 185
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 102 L 102
L
Sbjct: 185 L 185
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 102 L 102
L
Sbjct: 185 L 185
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 102 L 102
L
Sbjct: 185 L 185
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 102 L 102
L
Sbjct: 185 L 185
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 38/72 (52%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+VG+L VT L +F + G VV RV D T RS GYG+V YS + AL L
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 106 NNVELEGRAIRV 117
N L R IR+
Sbjct: 96 NFTPLNNRPIRI 107
Score = 53.5 bits (127), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+V NL ++ E L ++F YGT+ +V+ D G SRG GFV +S E AL+ +
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRALLEM 376
Query: 106 NNVELEGRAIRVSLAEGK 123
N + + + V+LA+ K
Sbjct: 377 NGKMVASKPLYVTLAQRK 394
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ +FV NLS + T + L + F E+GT+ A V+ DG+ G+S+ +GFV + + A+
Sbjct: 213 NNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVE 271
Query: 104 SLNNVELEGRAIRVSLAEGK 123
+LN +++ + V A+ K
Sbjct: 272 ALNGKKIDDKEWYVGKAQKK 291
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHK------------LFVGNL 51
ED +E ++G + + L V + K +E L+ + E K ++V N+
Sbjct: 240 EDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNI 299
Query: 52 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 111
V+ E L F GT+ A+++ D + G S+G+GFVC+S E A+ S +
Sbjct: 300 DDNVSDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFH 358
Query: 112 GRAIRVSLAEGK 123
G+ + VSLA+ K
Sbjct: 359 GKPLYVSLAQRK 370
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 55.1 bits (131), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L++ NL +VT E L ++F E+GTV ++L D + G SRG GFV +S E AL +
Sbjct: 308 LYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQ-GISRGSGFVAFSTPEEATRALAEM 366
Query: 106 NNVELEGRAIRVSLAEGK 123
N + G+ + V+ A+ K
Sbjct: 367 NGKMVAGKPLYVAPAQKK 384
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T L+VG+L VT L +F + G VV R+ D + +S GYG+V +S + A
Sbjct: 22 TTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKA 81
Query: 102 LISLNNVELEGRAIRV 117
+ LN L + IR+
Sbjct: 82 MDVLNFTPLNNKPIRI 97
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W SE++ + F+++G ++ A V+ D TGRS+GYGFV + A
Sbjct: 27 TYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 86
Query: 102 LISLNNVELEGRAIRVSLAEGKRS 125
+ V ++GR +LA R
Sbjct: 87 CADPSPV-IDGRRANCNLASHGRP 109
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T KLF+ LS T E L + F +G ++ A+V+ D +GRS+G+ FV YS E E A
Sbjct: 33 TSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKA 92
Query: 102 LISLNNVELEGRAIRVSLAE 121
+N L+G I V A+
Sbjct: 93 REGMNAKFLDGWVIFVDPAK 112
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W SE++ + F+++G ++ A V+ D TGRS+GYGFV + A
Sbjct: 27 TYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 86
Query: 102 LISLNNVELEGRAIRVSLAEGKR 124
+ V ++GR +LA R
Sbjct: 87 CADPSPV-IDGRRANCNLASHGR 108
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFV LS+ T + L +F +G + A ++ D T R +G+GFV Y E E A +
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
LN ++GR I V A+ K S
Sbjct: 68 LNGRIVDGRLIFVEHAKPKDS 88
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW E L + F YG V+ A ++ D TGR+RG+GFV +S + E +I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 105 LNNVELEGRAIRVSLA 120
+ + +GR + A
Sbjct: 67 KHII--DGRTVEAKKA 80
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L T+T F ++GT+ V+YD T R RG+GF+ Y ++
Sbjct: 102 PGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V A
Sbjct: 162 RVLYKTFH-ELNGKMVEVKRA 181
>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V+++ + ++F E G + V YD +GRS+G V +S+R +
Sbjct: 91 ETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYD-RSGRSKGTAEVVFSRRQDAVA 149
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ NNV+L+G+ +++ +
Sbjct: 150 AVKRYNNVQLDGKPMKIEI 168
>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V+++ + ++F E G + V YD +GRS+G V +S+R +
Sbjct: 91 ETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYD-RSGRSKGTAEVVFSRRQDAVA 149
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ NNV+L+G+ +++ +
Sbjct: 150 AVKRYNNVQLDGKPMKIEI 168
>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
chr4:23458840-23463583 | 20130731
Length = 263
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
ET KL++ NL + V+++ + ++F E G + V YD +GRS+G V +S+R +
Sbjct: 91 ETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYD-RSGRSKGTAEVVFSRRQDAVA 149
Query: 101 ALISLNNVELEGRAIRVSL 119
A+ NNV+L+G+ +++ +
Sbjct: 150 AVKRYNNVQLDGKPMKIEI 168
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ TVT + F ++GT+ V+YD T R RG+GF+ Y ++
Sbjct: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L+ + EL G+ + V A
Sbjct: 162 QVLLKTFH-ELNGKMVEVKRA 181
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW E L + F YG V A ++ D TGR+RG+GFV + + + +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 105 LNNVELEGRAIRVSLA 120
+N+ +GR + A
Sbjct: 67 KHNI--DGRMVEAKKA 80
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ TVT + F ++GT+ V+YD T R RG+GF+ Y ++
Sbjct: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L+ + EL G+ + V A
Sbjct: 162 QVLLKTFH-ELNGKMVEVKRA 181
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW E L + F YG V A ++ D TGR+RG+GFV + + + +
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 105 LNNVELEGRAIRVSLA 120
+N+ +GR + A
Sbjct: 67 KHNI--DGRMVEAKKA 80
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 39 YPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 98
Y + KL+VGNL + +T L ++F+ +GTV ++ D ETG +G+GF+ ++
Sbjct: 312 YGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA 371
Query: 99 ETALISLNNVELEGRAIRVS 118
+ A +E+ GR I+VS
Sbjct: 372 KAAQSLNGKLEIAGRTIKVS 391
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 39 YPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 98
Y + KL+VGNL + +T L ++F+ +GTV ++ D ETG +G+GF+ ++
Sbjct: 312 YGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA 371
Query: 99 ETALISLNNVELEGRAIRVS 118
+ A +E+ GR I+VS
Sbjct: 372 KAAQSLNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 39 YPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 98
Y + KL+VGNL + +T L ++F+ +GTV ++ D ETG +G+GF+ ++
Sbjct: 312 YGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA 371
Query: 99 ETALISLNNVELEGRAIRVS 118
+ A +E+ GR I+VS
Sbjct: 372 KAAQSLNGKLEIAGRTIKVS 391
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI-- 103
LF+G +S+ +L + F YG V+ A+++ D ETGR RG+GFV ++ E AL
Sbjct: 36 LFLGGISY----NTLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 104 -----SLNNVELEGRAIRVSLAEGK 123
S+ N +L GR +RV+ A K
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYATEK 116
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 34 PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 93
P P+ LFVGNLS++V + + FQ+ G VV R D E GR +G+G V ++
Sbjct: 366 PATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFA 424
Query: 94 KRSELETALISLNNVELEGRAIRVSLA 120
++AL +N EL RA+R+ LA
Sbjct: 425 SAEAAQSAL-EMNGQELLQRAVRLDLA 450
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W ++L + F ++G ++ A V+ D TG+S+GYGFV + + +A
Sbjct: 24 TYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSA 80
Query: 102 LISLNNVE--LEGRAIRVSLAEGK 123
+++ N ++GR +LA K
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQK 104
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W ++L + F ++G ++ A V+ D TG+S+GYGFV + + +A
Sbjct: 24 TYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSA 80
Query: 102 LISLNNVE--LEGRAIRVSLAEGK 123
+++ N ++GR +LA K
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQK 104
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 34 PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 93
P P+ LFVGNLS++V + + FQ+ G VV R D E GR +G+G V ++
Sbjct: 331 PATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFA 389
Query: 94 KRSELETALISLNNVELEGRAIRVSLA 120
++AL +N EL RA+R+ LA
Sbjct: 390 SAEAAQSAL-EMNGQELLQRAVRLDLA 415
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 53.9 bits (128), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 34 PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 93
P P+ LFVGNLS++V + + FQ+ G VV R D E GR +G+G V ++
Sbjct: 354 PATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFA 412
Query: 94 KRSELETALISLNNVELEGRAIRVSLA 120
++AL +N EL RA+R+ LA
Sbjct: 413 SAEAAQSAL-EMNGQELLQRAVRLDLA 438
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+G +SW E L + F YG V+ A ++ D TGR+RG+GFV +S + E +I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 105 LNNVELEGRAIRVSLA 120
+ ++GR + A
Sbjct: 67 KH--IIDGRTVEAKKA 80
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L T+T F ++GT+ V+YD T R RG+GF+ Y ++
Sbjct: 102 PGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V A
Sbjct: 162 RVLYKTFH-ELNGKMVEVKRA 181
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 53.5 bits (127), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 34 PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 93
P P+ LFVGNLS++V + + FQ+ G VV R D E GR +G+G V ++
Sbjct: 319 PATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFA 377
Query: 94 KRSELETALISLNNVELEGRAIRVSLA 120
++AL +N EL RA+R+ LA
Sbjct: 378 SAEAAQSAL-EMNGQELLQRAVRLDLA 403
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 53.5 bits (127), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P K+FVG L+ TVT F ++GT+ V+YD T R RG+GF+ Y +E
Sbjct: 32 PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVE 91
Query: 100 TALISLNNVELEGRAIRVSLA 120
L + EL G+ + V A
Sbjct: 92 KVLHKTFH-ELNGKMVEVKRA 111
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 53.5 bits (127), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
+FVG + + T +I VF +YG VV ++ D TG+S+G+ F+ Y + A+ +L
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 106 NNVELEGRAIRV 117
N ++ GR IRV
Sbjct: 98 NGAQVSGRIIRV 109
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W ++L + F ++G ++ A V+ D TG+S+GYGFV + + +A
Sbjct: 24 TYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSA 80
Query: 102 LISLNNVE--LEGRAIRVSLAEGK 123
+++ N ++GR +LA K
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQK 104
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 14 LDGKEFLGRTLRVNLSDKPKPKE--PLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 71
LDG + G L++ + P E ++++VG+LSW +T E L + F V
Sbjct: 280 LDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNC-NVK 338
Query: 72 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 120
R+ D ETG RGY V + L+TAL +L+ L GR +R+S A
Sbjct: 339 AIRLGMDKETGEFRGYAHVDFGDSQSLKTAL-ALDQSVLFGRPVRISCA 386
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W ++L + F ++G ++ A V+ D TG+S+GYGFV + + +A
Sbjct: 24 TYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSA 80
Query: 102 LISLNNVE--LEGRAIRVSLAEGK 123
+++ N ++GR +LA K
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQK 104
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W E++ + F+++G ++ A V+ D TGRS+GYGFV + + A
Sbjct: 14 TYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
Query: 102 LISLNNVELEGRAIRVSLAE 121
+ + ++GR +LA
Sbjct: 74 CVDAAPI-IDGRRANCNLAS 92
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
T K+FVG L+W E++ + F+++G ++ A V+ D TGRS+GYGFV + + A
Sbjct: 14 TYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
Query: 102 LISLNNVELEGRAIRVSLAE 121
+ + ++GR +LA
Sbjct: 74 CVDAAPI-IDGRRANCNLAS 92
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 53.1 bits (126), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
KLF+G +SW E L + F YG V+ V+ + TG+ RG+GFV +S S L+ L
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVL 64
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L T+ E Q F+ YG V V+YD TGR RG+GF+ + ++ L
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 105 LNNVELEGRAIRVSLA 120
+ +L G+ + V A
Sbjct: 173 TFH-DLNGKQVEVKRA 187
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 53.1 bits (126), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
KLF+G +SW E L + F YG V+ V+ + TG+ RG+GFV +S S L+ L
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVL 64
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L T+ E Q F+ YG V V+YD TGR RG+GF+ + ++ L
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 105 LNNVELEGRAIRVSLA 120
+ +L G+ + V A
Sbjct: 173 TFH-DLNGKQVEVKRA 187
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLF+ LS+ L F+++G ++ +V+ + TG S+GYGFV ++ + TA
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 105 LNNVELEGRAIRVSLAE 121
L+ ++GR IRV A
Sbjct: 94 LHGQIVDGRRIRVGYAH 110
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
E LFV LS T+E+L + FQ++G VV ARV+ D +G S+G+GFV Y+ +
Sbjct: 48 EPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAK 107
Query: 101 ALISLNNVELEGRAIRVSLA 120
+ ++ LEG I A
Sbjct: 108 GIEGMDGKFLEGWVIFAEYA 127
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+
Sbjct: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVD 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRMVDGREITVQFAK 93
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+
Sbjct: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVD 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRMVDGREITVQFAK 93
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+
Sbjct: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVD 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRMVDGREITVQFAK 93
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+
Sbjct: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVD 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRMVDGREITVQFAK 93
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG + TV+ + L F ++G VV ++ D T RSRG+GFV + ++ L
Sbjct: 107 KIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLAD 166
Query: 105 LNNVELEGRAIRVSLAEGKR 124
N ++++ + + AE K+
Sbjct: 167 GNMIDMDDTQVEIKKAEPKK 186
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 29 SDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 88
SD P + P K+F+G L+ T E ++ F+ YG + + ++ D TGR RG+G
Sbjct: 6 SDNPHSGDGASPG---KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFG 62
Query: 89 FVCYSKRSEL-----ETALISLNNVELE 111
F+ Y+ S + E +I+ VE++
Sbjct: 63 FITYADASVVDQVIQENHIINDKQVEIK 90
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG + VT + F YG V +++ D T RSRG+GFV + ++ L
Sbjct: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSM 193
Query: 105 LNNVELEGRAIRVSLAEGKRS 125
N +E G + + AE K++
Sbjct: 194 GNKIEFAGTQVEIKKAEPKKA 214
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+
Sbjct: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVD 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRMVDGREITVQFAK 93
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+
Sbjct: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVD 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRMVDGREITVQFAK 93
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+
Sbjct: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVD 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRMVDGREITVQFAK 93
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 44 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 103
+ L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+
Sbjct: 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVD 75
Query: 104 SLNNVELEGRAIRVSLAE 121
L+ ++GR I V A+
Sbjct: 76 RLDGRMVDGREITVQFAK 93
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVG L+W E++ F+++G ++ A V+ D TGRS+GYGFV + + E A+ +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTF---KDPEAAIRA 82
Query: 105 LNNVE--LEGRAIRVSLA 120
N ++GR ++A
Sbjct: 83 CQNPSPVIDGRRANCNIA 100
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVG L+W E++ F+++G ++ A V+ D TGRS+GYGFV + + E A+ +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTF---KDPEAAIRA 82
Query: 105 LNNVE--LEGRAIRVSLA 120
N ++GR ++A
Sbjct: 83 CQNPSPVIDGRRANCNIA 100
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 39 YPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 98
Y + KL+VGNL + +T +L ++F+ +G + ++ D ETG +G+GFV ++
Sbjct: 298 YGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA 357
Query: 99 ETALISLNNVELEGRAIRVS 118
+ A +E+ GR I+VS
Sbjct: 358 KAAQSLNGKLEIAGRTIKVS 377
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FVG L+W ++ + F+++G ++ A ++ D TG+S+GYGFV + A
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 105 LNNVELEGRAIRVSLA 120
N V ++GR ++A
Sbjct: 77 PNPV-IDGRRANCNIA 91
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 51.6 bits (122), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 42 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
+ KLF+ L W T+E L +F YG + A V+ D TG+S+GYGFV + ++ A
Sbjct: 71 SRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTF---LHVDGA 127
Query: 102 LISLN--NVELEGRAIRVSLAEGKRS 125
L++L + ++GR LA S
Sbjct: 128 LLALREPSKRIDGRVTVTQLAAAGNS 153
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 32 PKPKEPLYPETEHK-----LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRG 86
P P + P ++ L+VG+L V L +F + G VV RV D T RS G
Sbjct: 15 PAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLG 74
Query: 87 YGFVCYSKRSELETALISLNNVELEGRAIRV 117
YG+V ++ + AL LN + ++IRV
Sbjct: 75 YGYVNFTNPQDAARALDVLNFTPMNNKSIRV 105
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 5 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEP----LYPETEHK----------LFVGN 50
ED +E L+GK+ + V + K +E + +T + L++ N
Sbjct: 262 EDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKN 321
Query: 51 LSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVEL 110
L ++T E L ++F E+GT+ +++ D G SRG GFV +S E AL +N +
Sbjct: 322 LDDSITDEKLKEMFSEFGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRALGEMNGKMI 380
Query: 111 EGRAIRVSLAEGK 123
+ + V++A+ K
Sbjct: 381 VSKPLYVAVAQRK 393
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
K+FVG L+W ++L + F++YG ++ A ++ D TGRS+GYGFV + + A
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKA 75
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETE---HKLFVGNLSWTVTS 57
M E+ + + +L EF GR + + + K K P E + + LFV N + S
Sbjct: 136 MGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARS 195
Query: 58 ESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIR 116
+ + + F G VV A V++ R GYGFV Y + E + AL GR +R
Sbjct: 196 KDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLR 255
Query: 117 VSLAEGKR 124
V A KR
Sbjct: 256 V--APSKR 261
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETE---HKLFVGNLSWTVTS 57
M E+ + + +L EF GR + + + K K P E + + LFV N + S
Sbjct: 136 MGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARS 195
Query: 58 ESLIQVFQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIR 116
+ + + F G VV A V++ R GYGFV Y + E + AL GR +R
Sbjct: 196 KDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLR 255
Query: 117 VSLAEGKR 124
V A KR
Sbjct: 256 V--APSKR 261
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 101
K+FVG L+W ++L + F++YG ++ A ++ D TGRS+GYGFV + + A
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKA 75
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L+VG+L V L +F + V+ RV D T S GYG+V YS + A+ +L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 106 NNVELEGRAIRVSLA 120
N V L G+ IR+ +
Sbjct: 87 NYVPLNGKPIRIMFS 101
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L++ N+ ++ E L ++F E+GT+ +V+ D GRS+G GFV ++ E A+ +
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEM 364
Query: 106 NNVELEGRAIRVSLAEGK 123
N + + + VS+A+ K
Sbjct: 365 NGKIIGQKPVYVSVAQRK 382
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P ++F+G L + + + ++ + G +V +++ D ETG S+GY FV Y + +
Sbjct: 100 PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQ 159
Query: 100 TALISLNNVELEGRAIRVSLAEGK 123
A+ ++N E +G+ +R L+E K
Sbjct: 160 KAIDDIHNKEFKGKTLRCLLSETK 183
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P ++F+G L + + + ++ + G +V +++ D ETG S+GY FV Y + +
Sbjct: 100 PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQ 159
Query: 100 TALISLNNVELEGRAIRVSLAEGK 123
A+ ++N E +G+ +R L+E K
Sbjct: 160 KAIDDIHNKEFKGKTLRCLLSETK 183
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 40 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 99
P ++F+G L + + + ++ + G +V +++ D ETG S+GY FV Y + +
Sbjct: 100 PPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQ 159
Query: 100 TALISLNNVELEGRAIRVSLAEGK 123
A+ ++N E +G+ +R L+E K
Sbjct: 160 KAIDDIHNKEFKGKTLRCLLSETK 183
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+L+V LS+ T ESL F+ +G +V ++ D R RG+ F+ Y+ E + A+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 105 LNNVELEGRAIRVSLAEGK 123
++ L+GR I V +A+ +
Sbjct: 156 MHGKFLDGRVIFVEVAKPR 174
>Medtr1g073000.3 | polyadenylate-binding protein II | HC |
chr1:32414624-32417752 | 20130731
Length = 187
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VGN+ + T E + Q FQ GTV +L D + G+ +G+ +V + + ++ ALI L
Sbjct: 96 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEADAVQNALI-L 153
Query: 106 NNVELEGRAIRVS 118
N EL GR ++VS
Sbjct: 154 NETELHGRQLKVS 166
>Medtr1g073000.1 | polyadenylate-binding protein II | HC |
chr1:32414615-32419459 | 20130731
Length = 187
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VGN+ + T E + Q FQ GTV +L D + G+ +G+ +V + + ++ ALI L
Sbjct: 96 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEADAVQNALI-L 153
Query: 106 NNVELEGRAIRVS 118
N EL GR ++VS
Sbjct: 154 NETELHGRQLKVS 166
>Medtr1g073000.2 | polyadenylate-binding protein II | HC |
chr1:32414624-32419295 | 20130731
Length = 187
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
++VGN+ + T E + Q FQ GTV +L D + G+ +G+ +V + + ++ ALI L
Sbjct: 96 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEADAVQNALI-L 153
Query: 106 NNVELEGRAIRVS 118
N EL GR ++VS
Sbjct: 154 NETELHGRQLKVS 166
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 27 NLSDKPKPKEP---LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGR 83
NL D K K P + +++VG + SE L + + G VV R++ +
Sbjct: 90 NLDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASE 149
Query: 84 SRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
++G+ FV Y A+ LNN E +GR I+ S ++ K
Sbjct: 150 NKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAK 189
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 27 NLSDKPKPKEP---LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGR 83
NL D K K P + +++VG + SE L + + G VV R++ +
Sbjct: 90 NLDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASE 149
Query: 84 SRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
++G+ FV Y A+ LNN E +GR I+ S ++ K
Sbjct: 150 NKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAK 189
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 27 NLSDKPKPKEP---LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGR 83
NL D K K P + +++VG + SE L + + G VV R++ +
Sbjct: 90 NLDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASE 149
Query: 84 SRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
++G+ FV Y A+ LNN E +GR I+ S ++ K
Sbjct: 150 NKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAK 189
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 27 NLSDKPKPKEP---LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGR 83
NL D K K P + +++VG + SE L + + G VV R++ +
Sbjct: 90 NLDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASE 149
Query: 84 SRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 123
++G+ FV Y A+ LNN E +GR I+ S ++ K
Sbjct: 150 NKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAK 189
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LFV LS+ T + + F+ YG + R++ D E+ + RGY F+ Y +++ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 106 NNVELEGRAIRVSLAEGK 123
+ ++EGR + V + G+
Sbjct: 197 DGRKIEGRRVLVDVERGR 214
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LFV LS+ T + + F+ YG + R++ D E+ + RGY F+ Y +++ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 106 NNVELEGRAIRVSLAEGK 123
+ ++EGR + V + G+
Sbjct: 197 DGRKIEGRRVLVDVERGR 214
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LFV LS+ T + + F+ YG + R++ D E+ + RGY F+ Y +++ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 106 NNVELEGRAIRVSLAEGK 123
+ ++EGR + V + G+
Sbjct: 197 DGRKIEGRRVLVDVERGR 214
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LFV LS+ T + + F+ YG + R++ D E+ + RGY F+ Y +++ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 106 NNVELEGRAIRVSLAEGK 123
+ ++EGR + V + G+
Sbjct: 197 DGRKIEGRRVLVDVERGR 214
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 49.3 bits (116), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KLFVG++ T T E + +F+E+G VV ++ D +TG+ +G F+ Y+ E + A+ +
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 105 LNNVE-LEGRA--IRVSLAEGKR 124
L+N L G I+V A+G+R
Sbjct: 149 LHNRHTLPGGVGPIQVRYADGER 171
>Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr4:43219118-43218715 | 20130731
Length = 104
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 1 MSCVEDCNTVIENLDGKEFLGRTLRVNLSD-----KPKPKEPLYPETEHKLFVGNLSWTV 55
MS VE+ ++ +G E G L V+ D PK P ++ ++V LS ++
Sbjct: 7 MSTVEEVEKAMKKFNGYELAGNFLTVSKDDIRNTLPDLPKRPHAFDSPFSVYVTKLSRSI 66
Query: 56 -TSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFV 90
+E L Q+F ++G V A ++ D + RSRGYGFV
Sbjct: 67 ENNEHLEQLFSKHGKVECAELICDKVSSRSRGYGFV 102
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
K+FV L+++ T E L + F +YG VV A ++ + R +G+G+V +++ E A I
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 105 LN 106
+N
Sbjct: 93 MN 94
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 49.3 bits (116), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
EH++FVG L T E L ++FQ G V+ R+ + T ++RGY V ++ + + AL
Sbjct: 417 EHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKAL 476
Query: 103 ISLNNVELEGRAIRVSLAE 121
+ N + G+ S +E
Sbjct: 477 SEMKNPVIRGKRCGTSPSE 495
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
EH++FVG L T E L ++FQ G V+ R+ + T ++RGY V ++ + + AL
Sbjct: 417 EHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKAL 476
Query: 103 ISLNNVELEGRAIRVSLAE 121
+ N + G+ S +E
Sbjct: 477 SEMKNPVIRGKRCGTSPSE 495
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
EH++FVG L T E L ++FQ G V+ R+ + T ++RGY V ++ + + AL
Sbjct: 417 EHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKAL 476
Query: 103 ISLNNVELEGRAIRVSLAE 121
+ N + G+ S +E
Sbjct: 477 SEMKNPVIRGKRCGTSPSE 495
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W T+E+L F +YG + + + D +G+S+GY F+ + R+ AL
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRAL 223
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W T+E+L F +YG + + + D +G+S+GY F+ + R+ AL
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRAL 223
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
K+FV L W T+E+L F +YG + + + D +G+S+GY F+ + R+ AL
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRAL 223
>Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:29610838-29605718 | 20130731
Length = 291
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
E + KL+V NL VT+E + ++F E G + V YD + G G V Y++RS+
Sbjct: 106 EADTKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYD-KNGHPTGSAEVVYNRRSDAFA 164
Query: 101 ALISLNNVELEGRAIRVSL 119
AL NNV L+G+ +++ +
Sbjct: 165 ALKRYNNVLLDGKPMKIEI 183
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 15 DGKEFLGRTLR--VNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 72
+ K++ GR L +N+ + + + +T+ KLFV LS+ + ++L F+ +G +V
Sbjct: 162 ENKDYEGRNLENSLNMPNSSEASQEASVKTK-KLFVTGLSFYTSEKTLRAAFEGFGELVE 220
Query: 73 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 121
+V+ D + RS+GY F+ Y+ AL +N + G I V +A+
Sbjct: 221 VKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 269
>Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:7894145-7897152 | 20130731
Length = 315
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
KL++ NL V++E + +F E G + + YD + GRS+G V ++++SE AL
Sbjct: 76 KLYLSNLDDRVSNEDIHLLFSEEGELESYSIHYD-QFGRSKGTAEVVFTRQSEALAALKR 134
Query: 105 LNNVELEGRAIRVSL 119
NN++L+G+ +++ L
Sbjct: 135 YNNMKLDGKTLQIEL 149
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 43 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 102
E+ + V NLS L+++F+ +G V V D +TG SRG+GFV + R + + A+
Sbjct: 210 ENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAI 269
Query: 103 ISLNNVELEGRAIRVSLA 120
LN + +RV A
Sbjct: 270 NKLNGYGYDNLILRVEWA 287
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
L++ NL ++ E L ++F E+GT+ +V++D G S+G+GFV +S E A+ +
Sbjct: 211 LYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGM 269
Query: 106 NNVELEGRAIRVSLAEGK 123
+ + + + V +A+ K
Sbjct: 270 SGKIIGQKPLYVVVAQRK 287
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+LFV NL ++ T E L + F ++G+V ++ D +T RS+G F+ +S AL
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 105 LNNVELEGRAIRVSLA 120
+N +GR + V A
Sbjct: 960 SDNSIFQGRLLHVIAA 975
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LF+ ++ + L FQ +G V+ A+V D TG S+ +GFV Y ++A+ +
Sbjct: 351 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 410
Query: 106 NNVELEGRAIRV 117
N +L G+ ++V
Sbjct: 411 NGCQLGGKKLKV 422
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 46 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 105
LF+ ++ + L FQ +G V+ A+V D TG S+ +GFV Y ++A+ +
Sbjct: 350 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 409
Query: 106 NNVELEGRAIRV 117
N +L G+ ++V
Sbjct: 410 NGCQLGGKKLKV 421
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 27 NLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRG 86
N DK EP +LFV NL ++ T E L + F ++G+V A ++ D +T RS+G
Sbjct: 318 NPEDKKGVSEPC------RLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKG 371
Query: 87 YGFVCYSKRSELETALISLNNVELEGRAIRV 117
++ +S AL +N +GR + V
Sbjct: 372 IAYIHFSAPEFAARALEESDNSIFQGRLLHV 402
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+LFV NL ++ T E L + F ++G+V +L T RS+G F+ +S AL
Sbjct: 193 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 252
Query: 105 LNNVELEGRAIRV 117
NN +GR +RV
Sbjct: 253 SNNSIFQGRLLRV 265
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
++FVG L + T + ++ Q +G + ++ D ETG S+GYGF Y + + A +
Sbjct: 136 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 195
Query: 105 LNNVELEGRAIRVSLA 120
LN +++ + + V A
Sbjct: 196 LNGLKMGDKTLTVRRA 211
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
+LFV NL ++ T E L + F ++G+V +L T RS+G F+ +S AL
Sbjct: 179 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 238
Query: 105 LNNVELEGRAIRV 117
NN +GR +RV
Sbjct: 239 SNNSIFQGRLLRV 251
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 2 SCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHK------------LFVG 49
+ VE N N D F+GR R K + + L + E + L++
Sbjct: 264 AAVEKLNGTAINDDKVLFVGRAQR-----KAERENELKAKFEQERISRYEKLQGANLYLK 318
Query: 50 NLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVE 109
NL E L +F E+GTV RV+ D G S+G GFV +S E AL +N
Sbjct: 319 NLDDDFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKL 377
Query: 110 LEGRAIRVSLAEGK 123
+ + + V++A+ K
Sbjct: 378 VGRKPLFVAVAQRK 391
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 46.6 bits (109), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 2 SCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHK------------LFVG 49
+ VE N N D F+GR R K + + L + E + L++
Sbjct: 264 AAVEKLNGTAINDDKVLFVGRAQR-----KAERENELKAKFEQERISRYEKLQGANLYLK 318
Query: 50 NLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVE 109
NL E L +F E+GTV RV+ D G S+G GFV +S E AL +N
Sbjct: 319 NLDDDFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKL 377
Query: 110 LEGRAIRVSLAEGK 123
+ + + V++A+ K
Sbjct: 378 VGRKPLFVAVAQRK 391
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 46.2 bits (108), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
++FVG L + T + ++ Q +G + ++ D ETG S+GYGF Y + + A +
Sbjct: 179 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 238
Query: 105 LNNVELEGRAIRVSLA 120
LN +++ + + V A
Sbjct: 239 LNGLKMGDKTLTVRRA 254
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 45.8 bits (107), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 41 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 100
E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F Y+ + +
Sbjct: 357 EGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDI 416
Query: 101 ALISLNNVELEGRAIRVSLA 120
A +LN +++ + + V A
Sbjct: 417 ACAALNGIKMGDKTLTVRRA 436
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 45.8 bits (107), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
++FVG L + T + ++ Q +G + ++ D ETG S+GYGF Y + + A +
Sbjct: 299 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 358
Query: 105 LNNVELEGRAIRVSLA 120
LN +++ + + V A
Sbjct: 359 LNGLKMGDKTLTVRRA 374
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 45.8 bits (107), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 45 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 104
++FVG L + T + ++ Q +G + ++ D ETG S+GYGF Y + + A +
Sbjct: 284 RIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAA 343
Query: 105 LNNVELEGRAIRVSLA 120
LN +++ + + V A
Sbjct: 344 LNGLKMGDKTLTVRRA 359