Miyakogusa Predicted Gene
- Lj6g3v0084360.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj6g3v0084360.1 tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147462,50,5e-16,RRM_1,RNA recognition motif domain; RNA
recognition motif,RNA recognition motif domain; no
descripti,CUFF.57495.1
(273 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 342 3e-94
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 157 1e-38
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 155 5e-38
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 151 6e-37
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 149 3e-36
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 149 3e-36
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 145 4e-35
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 142 4e-34
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 142 4e-34
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 139 4e-33
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 88 7e-18
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 4e-16
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 1e-14
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 3e-14
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 76 3e-14
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 3e-14
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 4e-14
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 5e-14
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 5e-14
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 75 6e-14
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 75 8e-14
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 75 9e-14
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 9e-14
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 74 1e-13
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 1e-13
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 2e-13
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 73 2e-13
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 2e-13
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 73 3e-13
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 3e-13
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 3e-13
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 3e-13
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 3e-13
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 3e-13
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 73 3e-13
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 3e-13
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 72 5e-13
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 72 5e-13
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 72 5e-13
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 8e-13
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 8e-13
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 8e-13
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 71 1e-12
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 71 1e-12
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 71 1e-12
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 70 2e-12
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 70 2e-12
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 2e-12
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 70 2e-12
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 70 3e-12
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 5e-12
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 5e-12
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 69 5e-12
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 69 5e-12
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 69 6e-12
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 69 6e-12
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 69 6e-12
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 69 6e-12
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 68 8e-12
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 67 1e-11
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 67 2e-11
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 4e-11
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 65 5e-11
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 2e-10
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-10
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-10
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 62 5e-10
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 62 5e-10
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 5e-10
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 5e-10
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 5e-10
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 7e-10
Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 8e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 60 2e-09
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 60 2e-09
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 60 2e-09
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like pro... 60 3e-09
Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like pro... 60 3e-09
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 59 5e-09
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 59 7e-09
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 56 3e-08
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 3e-08
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 3e-08
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 3e-08
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 3e-08
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 3e-08
Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like pro... 56 3e-08
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 4e-08
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 5e-08
Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like pro... 55 5e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 55 6e-08
Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like pro... 55 6e-08
Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like pro... 55 6e-08
Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like pro... 55 6e-08
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c... 55 6e-08
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c... 55 6e-08
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c... 55 6e-08
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 7e-08
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 7e-08
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 7e-08
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 7e-08
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 55 8e-08
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 55 8e-08
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 9e-08
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 9e-08
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 55 9e-08
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 54 2e-07
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 54 2e-07
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 54 2e-07
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 54 2e-07
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 4e-07
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 4e-07
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 4e-07
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 4e-07
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 5e-07
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 5e-07
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 5e-07
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 5e-07
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 7e-07
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 1e-06
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 50 2e-06
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 50 2e-06
Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 49 4e-06
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 49 4e-06
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 49 4e-06
Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 49 4e-06
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 49 4e-06
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 5e-06
Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 49 6e-06
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 49 6e-06
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 342 bits (876), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 177/273 (64%), Positives = 199/273 (72%), Gaps = 20/273 (7%)
Query: 19 INTNVKCLRSKNCSVLASVSQSYL-------VEPLSIGGTISHNKLWVPRISXXXXXXXX 71
INT VKCLRSKN S+ S ++ ++ VEPLSIG T+SH KLW PRIS
Sbjct: 15 INT-VKCLRSKNSSLDTSSNRMFVSLISQSSVEPLSIGTTVSH-KLWFPRISVAVAQEEA 72
Query: 72 XXXXXXXXXXXXXXXXXXXXX-----------XXXXXXXXTKLYFGNLPYSVDSAQLAGL 120
TKLYFGNLPYSVDSA LAGL
Sbjct: 73 VVAVEDEEKVVVEEEEKEEEEVVEEKENIGGETVAEVDTRTKLYFGNLPYSVDSALLAGL 132
Query: 121 IEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKP 180
IEEYGSAELIEVLYDRD+GKSRGFAFVTMSCVEDCN VI+NLDGKEF+GRTLRVN SDKP
Sbjct: 133 IEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKP 192
Query: 181 KPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCY 240
KPKEPLYPETE+KLFVGNL+WTVTSESL Q FQE+GTVVGARVL+DGETG+SRGYGFV Y
Sbjct: 193 KPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSY 252
Query: 241 SKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
+ +SE++TAL ++NVELEGR +RVSLA+GKRS
Sbjct: 253 ATKSEMDTALAIMDNVELEGRTLRVSLAQGKRS 285
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 112/177 (63%), Gaps = 8/177 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ GN P+ VDS +LA L + G+ E+ EV+Y+R + SRGF FVTMS VE+ + +E
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLF-------VGNLSWTVTSESLIQVFQE 214
+G ++ GR+L VN + PK P E + F V NL+W V + L QVF E
Sbjct: 170 FNGYDYNGRSLVVNKA-SPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSE 228
Query: 215 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+G +V ARV+YD ETGRSRG+GFV S +E+ A+ +L+ LEGR IRVS+AE +
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDR 285
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P + KLFVGN + V SE L +F + GTV A V+Y+ +T SRG+GFV S E E
Sbjct: 105 PPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAE 164
Query: 248 TALISLNNVELEGRAIRVSLAEGKRS 273
+A+ N + GR++ V+ A K S
Sbjct: 165 SAVEKFNGYDYNGRSLVVNKASPKGS 190
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ GNLP+ VDS +LA L E+ G+ E+ EV+Y+RD+ +SRGF FVTMS E+ +
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 162 LDGKEFLGRTLRVNLSDK---PKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
G E GR L VN + P+ ++P + + +VGNL W V + SL Q+F E+G V
Sbjct: 183 FSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKV 242
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
A+V+YD ETGRSRG+GFV S +E+ A+ +L+ GRAIRV++AE +
Sbjct: 243 ESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEER 295
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P + K+FVGNL + V SE L Q+F++ GTV A V+Y+ +T RSRG+GFV S E+E
Sbjct: 118 PSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVE 177
Query: 248 TALISLNNVELEGRAIRVSLA 268
A+ + EL+GR + V+ A
Sbjct: 178 RAVNKFSGFELDGRLLTVNKA 198
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 112/184 (60%), Gaps = 12/184 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+LY GNLP+S+ S+QLA + E G+ +E++YDR + +SRGFAFVTM E+ I
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPL------------YPETEHKLFVGNLSWTVTSESLI 209
DG + GR+ +VN + PK E L + ++ HK++ GNL W + S+ L
Sbjct: 170 FDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLR 229
Query: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
F E ++GA+++Y+ + GRSRG+GFV + LE AL ++N VE++GR +R++LA
Sbjct: 230 DAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAA 289
Query: 270 GKRS 273
+ S
Sbjct: 290 ARTS 293
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 21/191 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+L+ GNLP+SVDSAQLA + E G E++EV+YD+ +G+SRGF FVTMS + +
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 162 LDGKEFLGRTLRVNLSDKPKPK---------------EPLYP------ETEHKLFVGNLS 200
L+G GR LRVN P P+ P P + ++++ VGNL+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 201 WTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 260
W V + +L +F E G V+ A+V+YD E+GRSRG+GFV +S E+++A+ +L+ +L G
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 261 RAIRVSLAEGK 271
RAIRVS A+ +
Sbjct: 265 RAIRVSPADSR 275
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 117/191 (61%), Gaps = 21/191 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+L+ GNLP+SVDSAQLA + E G E++EV+YD+ +G+SRGF FVTMS + +
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 162 LDGKEFLGRTLRVNLSDKPKPK---------------EPLYP------ETEHKLFVGNLS 200
L+G GR LRVN P P+ P P + ++++ VGNL+
Sbjct: 145 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLA 204
Query: 201 WTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEG 260
W V + +L +F E G V+ A+V+YD E+GRSRG+GFV +S E+++A+ +L+ +L G
Sbjct: 205 WGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 264
Query: 261 RAIRVSLAEGK 271
RAIRVS A+ +
Sbjct: 265 RAIRVSPADSR 275
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 8/175 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KLY GN+P +V + +L +++E+G+ E EV+YD+ S +SR FAFVTM VED N E
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 162 LDGKEFLGRTLRVNLSDKP--------KPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ 213
L+G E GR ++VN+++KP + E + ++ +K++VGNL+ VTS+SL + F
Sbjct: 121 LNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKFFS 180
Query: 214 EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
E G + A+V T +S G+GFV +S ++E A+ S NN LEG+ IRV+ A
Sbjct: 181 EKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KL+VGN+ TV+++ L ++ QE+G V A V+YD + RSR + FV + A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 253 LNNVELEGRAIRVSLAE 269
LN E+ GR I+V++ E
Sbjct: 121 LNGTEIGGREIKVNITE 137
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 109/179 (60%), Gaps = 8/179 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+L+ GNLP+S+ S+QLA L E G+ +E+LYD + +SRGFAFVTM VED I
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPL--------YPETEHKLFVGNLSWTVTSESLIQVFQ 213
DG GR ++VN + P + + Y ++ HK++ GNL W +TS+ L + F
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFA 228
Query: 214 EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
+ ++ A+V+Y+ G+SRGYGFV + ++E AL ++N VE++GR +R+ LA R
Sbjct: 229 KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDNR 287
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 109/179 (60%), Gaps = 8/179 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+L+ GNLP+S+ S+QLA L E G+ +E+LYD + +SRGFAFVTM VED I
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPL--------YPETEHKLFVGNLSWTVTSESLIQVFQ 213
DG GR ++VN + P + + Y ++ HK++ GNL W +TS+ L + F
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFA 228
Query: 214 EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
+ ++ A+V+Y+ G+SRGYGFV + ++E AL ++N VE++GR +R+ LA R
Sbjct: 229 KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDNR 287
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 8/160 (5%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ GN P+ VDS +LA L + G+ E+ EV+Y+R + SRGF FVTMS VE+ + +E
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLF-------VGNLSWTVTSESLIQVFQE 214
+G ++ GR+L VN + PK P E + F V NL+W V + L QVF E
Sbjct: 170 FNGYDYNGRSLVVNKA-SPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSE 228
Query: 215 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN 254
+G +V ARV+YD ETGRSRG+GFV S +E+ A+ +L+
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALD 268
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P + KLFVGN + V SE L +F + GTV A V+Y+ +T SRG+GFV S E E
Sbjct: 105 PPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAE 164
Query: 248 TALISLNNVELEGRAIRVSLAEGKRS 273
+A+ N + GR++ V+ A K S
Sbjct: 165 SAVEKFNGYDYNGRSLVVNKASPKGS 190
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++Y NL + VD+++L + E+G V+YDR++G+SRGF FVTMS + N I
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 162 LDGK 165
LDG+
Sbjct: 267 LDGQ 270
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 3/174 (1%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y VD L G I+++ ++ +G+ G+ F+ V++
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 163 DGKEFLG--RTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-EYGTVV 219
+G + G +T R+N + + +H +FVG+L+ VT L + F+ YG+V
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVR 136
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
GA+V+ D TGRS+GYGFV +S SE A+ +N V R +R+S A K++
Sbjct: 137 GAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 190
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Query: 107 NLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKE 166
NLP+S+ + L + G+ +E++ +D GK +G+ FVTM E ++ + E
Sbjct: 102 NLPWSLSKPDIKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKFNATE 160
Query: 167 FLGRTLRVNLSD-----KPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQE-YGTVVG 220
GR LRV + +P P P E + ++ NL+W S L +F E + T V
Sbjct: 161 ISGRILRVEFAKGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVS 220
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
ARV++ G+S GYGFV Y E E A+ +L EL GR + V ++E K
Sbjct: 221 ARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERK 271
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
+ E++ FVG L+W +E+L + F +YG +V ++++ D ETGRSRG+GFV ++ +
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 248 TALISLNNVELEGRAIRVSLAE 269
A+ ++N +L+GR I V+ A+
Sbjct: 62 DAIEAMNGQDLDGRNITVNQAQ 83
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ D+ L +YG +++ DR++G+SRGF FVT + + N IE
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 162 LDGKEFLGRTLRVN 175
++G++ GR + VN
Sbjct: 67 MNGQDLDGRNITVN 80
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 55/82 (67%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
+ E++ FVG L+W +E+L + F +YG +V ++++ D ETGRSRG+GFV ++ +
Sbjct: 2 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 248 TALISLNNVELEGRAIRVSLAE 269
A+ ++N +L+GR I V+ A+
Sbjct: 62 DAIEAMNGQDLDGRNITVNQAQ 83
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ D+ L +YG +++ DR++G+SRGF FVT + + N IE
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 162 LDGKEFLGRTLRVN 175
++G++ GR + VN
Sbjct: 67 MNGQDLDGRNITVN 80
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEV-LYDRDSGKSRGFAFVTMSCVEDCNTVI 159
T+L N+P+S + + L E+YG +E+ +Y+++ ++RG AFV M E+ + +
Sbjct: 89 TRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKN--RNRGLAFVEMGSPEEASEAL 146
Query: 160 ENLDGKEFLGRTLRVNLSDKPKPKEPLYPETE---HKLFVGNLSWTVTSESLIQVFQE-Y 215
+L EF GR + + + K K P E + + LFV N + S+ + + F
Sbjct: 147 NSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFDSGT 206
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
G VV A V++ R GYGFV Y + E + AL GR +RV A KR
Sbjct: 207 GKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRV--APSKR 261
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEV-LYDRDSGKSRGFAFVTMSCVEDCNTVI 159
T+L N+P+S + + L E+YG +E+ +Y+++ ++RG AFV M E+ + +
Sbjct: 89 TRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKN--RNRGLAFVEMGSPEEASEAL 146
Query: 160 ENLDGKEFLGRTLRVNLSDKPKPKEPLYPETE---HKLFVGNLSWTVTSESLIQVFQE-Y 215
+L EF GR + + + K K P E + + LFV N + S+ + + F
Sbjct: 147 NSLQSYEFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFDSGT 206
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
G VV A V++ R GYGFV Y + E + AL GR +RV A KR
Sbjct: 207 GKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRV--APSKR 261
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 54/82 (65%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
+ E++ FVG L+W SE+L + F +YG ++ ++++ D ETGRSRG+GFV ++ +
Sbjct: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
Query: 248 TALISLNNVELEGRAIRVSLAE 269
A+ +N +++GR I V+ A+
Sbjct: 64 DAIEGMNGQDMDGRNITVNEAQ 85
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ DS L +YG +++ DR++G+SRGF FVT + + IE
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 162 LDGKEFLGRTLRVN 175
++G++ GR + VN
Sbjct: 69 MNGQDMDGRNITVN 82
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G LS+ V +SL F YG VV ARV+ D ETGRSRG+GFV ++ E T+ +S
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSE-ESATSALS 95
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
++ +L GR IRVS A +++
Sbjct: 96 MDGQDLNGRNIRVSYANDRQA 116
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+KL+ G L Y+VD L YG V+ DR++G+SRGF FV + E + +
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL- 94
Query: 161 NLDGKEFLGRTLRVNLSDKPKP 182
++DG++ GR +RV+ ++ +
Sbjct: 95 SMDGQDLNGRNIRVSYANDRQA 116
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G +S++ L + F YG V+ A+++ D +TGRSRG+GF+ ++ E +AL +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 253 LNNVELEGRAIRVSLA 268
++N EL+GR +RV+ A
Sbjct: 101 MDNKELDGRTVRVNYA 116
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + YS D L YG +++ DRD+G+SRGF F+T + E+ ++ ++
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 162 LDGKEFLGRTLRVN-LSDKPKP 182
+D KE GRT+RVN +++ +P
Sbjct: 101 MDNKELDGRTVRVNYATERARP 122
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G +S++ L + F YG V+ A+++ D +TGRSRG+GF+ ++ E +AL +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 253 LNNVELEGRAIRVSLA 268
++N EL+GR +RV+ A
Sbjct: 101 MDNKELDGRTVRVNYA 116
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + YS D L YG +++ DRD+G+SRGF F+T + E+ ++ ++
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 162 LDGKEFLGRTLRVN-LSDKPKP 182
+D KE GRT+RVN +++ +P
Sbjct: 101 MDNKELDGRTVRVNYATERARP 122
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDS-GKSRGFAFVTMSCVEDCNTVI 159
T LY NL + L +G ++I + +DS G S+GF FV ED +
Sbjct: 189 TNLYMKNLDLDISETLLREKFSSFG--KIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAM 246
Query: 160 ENLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHK------------LFVGNLSWTVTSE 206
E ++G + + L V + K +E L+ + E K ++V N+ V+ E
Sbjct: 247 ETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDE 306
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
L F GT+ A+++ D + G S+G+GFVC+S E A+ S + G+ + VS
Sbjct: 307 GLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVS 365
Query: 267 LAEGK 271
LA+ K
Sbjct: 366 LAQRK 370
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY G+L + +QL ++ + + + D SGKS + +V D IE
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 163 DGKEFLGRTLRVNLSDK-PKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
+ G+ +RV S + P ++ +FV NL+ ++ + L +F+++G ++ +
Sbjct: 72 NHSTLNGKAIRVMWSRRDPDARKSCI----GNVFVKNLAESIDNSGLEDMFKKFGNILSS 127
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLN 254
+V+ E G+S+GYGFV + A+ LN
Sbjct: 128 KVVM-SEDGKSKGYGFVQFETEESANAAIERLN 159
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 3/174 (1%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L +D + L G ++V+ ++ SG S G+ F V++N
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 163 DG--KEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQE-YGTVV 219
G + R+N + + T+ +FVG+L+ VT L + F Y +V
Sbjct: 159 AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVK 218
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
A+V+YD TGRS+GYGFV + SE A+ +N V R +R+ A ++S
Sbjct: 219 AAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKS 272
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 85/172 (49%), Gaps = 3/172 (1%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y +D L G ++V+ ++ + +S G+ F+ V++
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 163 DGKEFL--GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQ-EYGTVV 219
+G G+ R+N + ++ ++ +FVG+L+ V+ L +VF+ Y +V
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVK 195
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
GA+V+ D TGR++GYGFV ++ SE A+ + V R +R+ A K
Sbjct: 196 GAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNK 247
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 22/182 (12%)
Query: 103 LYFGNLPYSVDSAQLAGLIE-EYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++ G+L V L + Y S + +V+ DR +G+++G+ FV + + +
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 162 LDGKEFLGRTLRV------NLSDKPKPKEPLYPE---------TEHKLFVGNLSWTVTSE 206
+ G R +R+ NL + P+ +FVGNL VT E
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDE 288
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
L QVF +YG +V ++ +G+ GFV ++ RS E AL LN L G+ +R+S
Sbjct: 289 HLKQVFTQYGELVHVKI----PSGKR--CGFVQFADRSSAEEALRVLNGTLLGGQNVRLS 342
Query: 267 LA 268
Sbjct: 343 WG 344
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 5/169 (2%)
Query: 104 YFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLD 163
Y GNL + L L + G + V DR + + +G+ FV ED + I+ L+
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 164 GKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV-GAR 222
+ G+ +RVN + + K + LF+GNL V + L F +G +V +
Sbjct: 88 MIKLYGKPIRVNKASQDKKSL----DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
++ D +TG SRG+GF+ Y ++A+ ++N L R I VS A K
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 3/174 (1%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L +D + L G ++V+ ++ SG S G+ F V++N
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 163 DG--KEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQE-YGTVV 219
G + R+N + + T+ +FVG+L+ VT L + F Y +V
Sbjct: 159 AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVK 218
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
A+V+YD TGRS+GYGFV + SE A+ +N V R +R+ A ++S
Sbjct: 219 AAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKS 272
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 103 LYFGNLPYSV-DSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++ G+L V DS Y S + +V+YD ++G+S+G+ FV + + +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYP--------------ETEHKLFVGNLSWTVTSES 207
++G R +R+ + P+ P T +FVG L VT E
Sbjct: 252 MNGVYCSSRPMRIGAA-TPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDED 310
Query: 208 LIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
L Q F +YG + ++ +G GFV ++ R+ E AL LN + + +R+S
Sbjct: 311 LKQTFSQYGEIASVKIPV------GKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLS 363
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 54/82 (65%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
+ E++ FVG L+W S++L Q F ++G + ++V+ D ETGRSRG+GFV +++ +
Sbjct: 4 SDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMR 63
Query: 248 TALISLNNVELEGRAIRVSLAE 269
A+ +N +++GR I V+ A+
Sbjct: 64 DAIEEMNGQDIDGRNITVNEAQ 85
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+ + G L ++ DS L ++G +V+ DR++G+SRGF FVT + + IE
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 162 LDGKEFLGRTLRVN 175
++G++ GR + VN
Sbjct: 69 MNGQDIDGRNITVN 82
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%)
Query: 180 PKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVC 239
P + + + KL+VG +S++ L + F YG V+ ARV+ D E GRS+G+GFV
Sbjct: 28 PLAFQAIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVT 87
Query: 240 YSKRSELETALISLNNVELEGRAIRVSLAE 269
++ E AL +++N EL GR +RV+ A+
Sbjct: 88 FATSEEASAALQAMDNQELHGRTVRVNYAQ 117
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
KLY G + YS D A L YG V+ DR+ G+S+GF FVT + E+ + ++
Sbjct: 40 AKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQ 99
Query: 161 NLDGKEFLGRTLRVNLS-DKPK 181
+D +E GRT+RVN + ++P+
Sbjct: 100 AMDNQELHGRTVRVNYAQERPR 121
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ G+L + +D L G +V+ ++ +G+S G+ FV V++N
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 163 DGKEF--LGRTLRVN---LSDKPKPKEPLYPETEHKL--FVGNLSWTVTSESLIQVF-QE 214
+G + R+N S E E L FVG+L+ VT L + F +
Sbjct: 178 NGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASK 237
Query: 215 YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
+ ++ GA+V+ D TGRS+GYGFV + SE A+ +N V R +RV +A K++
Sbjct: 238 FSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKT 296
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+G +S++ SL + F YG V+ AR++ D ETGRSRG+GF+ ++ E +A+ +
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 253 LNNVELEGRAIRVSLA 268
L+ +L GR +RV+ A
Sbjct: 103 LDGQDLHGRRVRVNYA 118
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TKL+ G + YS D L YG ++ DR++G+SRGF F+T + VE+ ++ I+
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 161 NLDGKEFLGRTLRVNLSDKPKPK 183
LDG++ GR +RVN +++ +P+
Sbjct: 102 ALDGQDLHGRRVRVNYANE-RPR 123
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y GN+ V L L G+ E +++ S + FV I L
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
+G+ G++++VN + +E +FVG+LS VT +L F Y + AR
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDT--SGHFHIFVGDLSPEVTDATLYACFSAYSSCSDAR 161
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V++D +TGRSRG+GFV + + E ++A+ L L R IR + A
Sbjct: 162 VMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWA 207
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 42/199 (21%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++ G+L V A L Y S V++D+ +G+SRGF FV+ ++ + I +
Sbjct: 132 HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAIND 191
Query: 162 LDGKEFLGRTLRVNL----------------------------------SDKPKPKEPLY 187
L GK R +R N SD K P Y
Sbjct: 192 LTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQY 251
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
++VGNL+ VTS L F +G + D R +G+GFV YS E
Sbjct: 252 ----TTVYVGNLAPEVTSVDLHHHFH----ALGVGTIEDVRVQRDKGFGFVRYSTHGEAA 303
Query: 248 TALISLNNVELEGRAIRVS 266
A+ N L G+ I+ S
Sbjct: 304 LAIQMGNTRFLFGKPIKCS 322
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G LP + L E G I+++ DR++G+S+G+AFV E I+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
++ KEF G+TLR LS ET+H+LF+GN+ T T + + + G V
Sbjct: 164 DIHNKEFKGKTLRCLLS-----------ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVE 212
Query: 221 A-RVLYDGET-GRSRGYGFVCYSKRSELETALISLNNV--ELEGRAIRVSLAEGKRS 273
+ ++ D + R+RG+ FV Y + + + +++V +L+G V+ A+ K S
Sbjct: 213 SIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTS 269
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYD-RDSGKSRGFAFV---TMSCVEDCN 156
+L+ GN+P + + +E G E I+++ D ++ ++RGFAFV +C +
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 157 TVIENLDGKEFLGRTLRVNLSD-KPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEY 215
+ ++ G + G T V +D K P + L+V N+ VT+E L ++F+ +
Sbjct: 245 QKMSSV-GFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRH 303
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
G V V+ G+ R +GF+ Y++RS A+ E++G+A+ V +A
Sbjct: 304 GEVTKV-VMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G LP + L E G I+++ DR++G+S+G+AFV E I+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
++ KEF G+TLR LS ET+H+LF+GN+ T T + + + G V
Sbjct: 164 DIHNKEFKGKTLRCLLS-----------ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVE 212
Query: 221 A-RVLYDGET-GRSRGYGFVCYSKRSELETALISLNNV--ELEGRAIRVSLAEGKRS 273
+ ++ D + R+RG+ FV Y + + + +++V +L+G V+ A+ K S
Sbjct: 213 SIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTS 269
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYD-RDSGKSRGFAFV---TMSCVEDCN 156
+L+ GN+P + + +E G E I+++ D ++ ++RGFAFV +C +
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 157 TVIENLDGKEFLGRTLRVNLSD-KPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEY 215
+ ++ G + G T V +D K P + L+V N+ VT+E L ++F+ +
Sbjct: 245 QKMSSV-GFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRH 303
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
G V V+ G+ R +GF+ Y++RS A+ E++G+A+ V +A
Sbjct: 304 GEVTKV-VMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
++++ G LP + L E G I+++ DR++G+S+G+AFV E I+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
++ KEF G+TLR LS ET+H+LF+GN+ T T + + + G V
Sbjct: 164 DIHNKEFKGKTLRCLLS-----------ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVE 212
Query: 221 A-RVLYDGET-GRSRGYGFVCYSKRSELETALISLNNV--ELEGRAIRVSLAEGKRS 273
+ ++ D + R+RG+ FV Y + + + +++V +L+G V+ A+ K S
Sbjct: 213 SIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTS 269
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 87/173 (50%), Gaps = 8/173 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYD-RDSGKSRGFAFV---TMSCVEDCN 156
+L+ GN+P + + +E G E I+++ D ++ ++RGFAFV +C +
Sbjct: 185 RLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSR 244
Query: 157 TVIENLDGKEFLGRTLRVNLSD-KPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEY 215
+ ++ G + G T V +D K P + L+V N+ VT+E L ++F+ +
Sbjct: 245 QKMSSV-GFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRH 303
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
G V V+ G+ R +GF+ Y++RS A+ E++G+A+ V +A
Sbjct: 304 GEVTKV-VMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 192 HKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALI 251
+KLFVG LSW+V +SL F +G V R++YD ++GR+RG+GFV +S ++A
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 252 SLNNVELEGRAIRVSLA 268
+++ L GR +R++ A
Sbjct: 96 AMDGKALLGRPLRINFA 112
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
KL+ G L +SVD L +G + ++YD+DSG++RGF FV S + + +
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 161 NLDGKEFLGRTLRVNLS-DKPK 181
+DGK LGR LR+N + +KP+
Sbjct: 96 AMDGKALLGRPLRINFALEKPR 117
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE- 160
KL+ G + + + +L YG + ++ DR +G++RGF FV + V++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 161 --NLDGKEFLGRTL----------RVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESL 208
N+DG+ + R + S P P K+FVG L+ TVT
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPG----PGRTRKIFVGGLASTVTESDF 122
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
+ F ++GT+ V+YD T R RG+GF+ Y ++ L+ + EL G+ + V A
Sbjct: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFH-ELNGKMVEVKRA 181
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY NL V L +G + + D ++G+S+GF FV +D +E
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPDDARRAME 252
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP----LYPETEHK-----LFVGNLSWTVTSESLIQV 211
+DG +F + L V + K +E L+ E K ++V N+ +V E L
Sbjct: 253 AMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDH 312
Query: 212 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
F G V+ A+V+ D + G S+G+GFVC+S E ++ N G+ + V A+ K
Sbjct: 313 FSACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKK 371
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 6/164 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY G+L V AQL E+ + V D +GKS + +V +S ++ IE
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 163 DGKEFLGRTLRVN-LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
+ G+ +RV LS ++ + +FV NL+ ++ + L +FQ+YG ++ +
Sbjct: 77 NHSSLNGKVIRVMWLSRDADARK----SGKGNVFVKNLAASIDNVGLHDLFQKYGNILSS 132
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
++ E G+S+G+G++ + A+ +N + + I V
Sbjct: 133 KIAR-SEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYV 175
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 176 LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGY 235
++D K P P L+VG+L VT L + F E+ T++ ARV D TG+S Y
Sbjct: 1 MTDSEKDAVPASPAAT--LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCY 58
Query: 236 GFVCYSKRSELETALISLNNVELEGRAIRV 265
G+V S E A+ N+ L G+ IRV
Sbjct: 59 GYVNLSSHQEAIRAIELKNHSSLNGKVIRV 88
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE- 160
KL+ G + + + +L YG + ++ DR +G++RGF FV + V++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 161 --NLDGKEFLGRTL----------RVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESL 208
N+DG+ + R + S P P K+FVG L+ TVT
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPG----PGRTRKIFVGGLASTVTESDF 122
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
+ F ++GT+ V+YD T R RG+GF+ Y ++ L+ + EL G+ + V A
Sbjct: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFH-ELNGKMVEVKRA 181
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y GN+ +V LA + + G +++ S + FV I L
Sbjct: 46 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 101
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
G++ G+ L+VN + +E +FVG+LS VT +L F Y T AR
Sbjct: 102 HGRQLYGQALKVNWAYANSSREDT--SGHFNVFVGDLSPEVTDATLFACFSVYTTCSDAR 159
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V++D +TGRS+GYGFV + + ++A+ + L R IR + A
Sbjct: 160 VMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 205
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y GN+ +V LA + + G +++ S + FV I L
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
G++ G+ L+VN + +E +FVG+LS VT +L F Y T AR
Sbjct: 118 HGRQLYGQALKVNWAYANSSREDT--SGHFNVFVGDLSPEVTDATLFACFSVYTTCSDAR 175
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V++D +TGRS+GYGFV + + ++A+ + L R IR + A
Sbjct: 176 VMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 221
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y GN+ +V LA + + G +++ S + FV I L
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
G++ G+ L+VN + +E +FVG+LS VT +L F Y T AR
Sbjct: 118 HGRQLYGQALKVNWAYANSSREDT--SGHFNVFVGDLSPEVTDATLFACFSVYTTCSDAR 175
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V++D +TGRS+GYGFV + + ++A+ + L R IR + A
Sbjct: 176 VMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 221
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + + + +L + +G ++ DR +G++RGF FV + V+
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 162 LDGKEFLGRTL---------------RVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSE 206
++ GRT+ R N S P P K+FVG L+ TVT
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPT--PIRTKKIFVGGLASTVTES 120
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
F ++GT+ V+YD T R RG+GF+ Y +E L + EL G+ + V
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH-ELNGKMVEVK 179
Query: 267 LA 268
A
Sbjct: 180 RA 181
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + + + +L + +G ++ DR +G++RGF FV + V+
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 162 LDGKEFLGRTL---------------RVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSE 206
++ GRT+ R N S P P K+FVG L+ TVT
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPT--PIRTKKIFVGGLASTVTES 120
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
F ++GT+ V+YD T R RG+GF+ Y +E L + EL G+ + V
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH-ELNGKMVEVK 179
Query: 267 LA 268
A
Sbjct: 180 RA 181
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 20/182 (10%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + + + +L + +G ++ DR +G++RGF FV + V+
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
Query: 162 LDGKEFLGRTL---------------RVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSE 206
++ GRT+ R N S P P K+FVG L+ TVT
Sbjct: 63 MEKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPT--PIRTKKIFVGGLASTVTES 120
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
F ++GT+ V+YD T R RG+GF+ Y +E L + EL G+ + V
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH-ELNGKMVEVK 179
Query: 267 LA 268
A
Sbjct: 180 RA 181
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIE--VLYDRDSGKSRGFAFVTMSCVEDCNTVI 159
KL+ G + + D +L YG E+IE ++ DR +G++RGF FV S VI
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYG--EVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI 64
Query: 160 ENLDGKEFLGRTLRVNLSDKPKPKEPLY--------------PETEHKLFVGNLSWTVTS 205
+D GRT+ + K P++ P K+FVG L T+T
Sbjct: 65 --IDKHIIDGRTVE---AKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITE 119
Query: 206 ESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
F ++GT+ V+YD T R RG+GF+ Y ++ L + EL G+ + V
Sbjct: 120 SDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFH-ELNGKMVEV 178
Query: 266 SLA 268
A
Sbjct: 179 KRA 181
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 24/183 (13%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIE--VLYDRDSGKSRGFAFVTMSCVEDCNTVI 159
KL+ G + + D +L YG E+IE ++ DR +G++RGF FV S VI
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYG--EVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI 64
Query: 160 ENLDGKEFLGRTLRVNLSDKPKPKEPLY--------------PETEHKLFVGNLSWTVTS 205
+D GRT+ + K P++ P K+FVG L T+T
Sbjct: 65 --IDKHIIDGRTVE---AKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITE 119
Query: 206 ESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
F ++GT+ V+YD T R RG+GF+ Y ++ L + EL G+ + V
Sbjct: 120 SDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFH-ELNGKMVEV 178
Query: 266 SLA 268
A
Sbjct: 179 KRA 181
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ G L + E YG ++ DR +G+ RGF F+T + + VI+
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 162 ---LDGKEF-LGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT 217
++ K+ + RT+ PK K+FVG + TV+ + L F ++G
Sbjct: 79 NHIINDKQVEIKRTI-------PKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGN 131
Query: 218 VVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
VV ++ D T RSRG+GFV + ++ L N ++++ + + AE K+
Sbjct: 132 VVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 21/185 (11%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y NL SV L EYG+ V+ D D GKS+ F FV + +E L
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAAAEAVEAL 263
Query: 163 DGKEF------LGRTLR-----VNLSDKPKPKEPLYPETEHK-----LFVGNLSWTVTSE 206
+GK+F +G+ L+ + L ++ E ET K L++ NL +VT E
Sbjct: 264 NGKKFDDKEWYVGKALKKYERELELKER---HEQSMKETVDKFYGANLYLKNLDDSVTDE 320
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
L ++F E+GTV ++L D + G SRG GFV +S E AL +N + G+ + V+
Sbjct: 321 KLSELFSEFGTVTSCKILRDPQ-GISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 267 LAEGK 271
A+ K
Sbjct: 380 PAQKK 384
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 80/173 (46%), Gaps = 6/173 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G+L + V +QL L + G + + D S +S G+ +V S D ++
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
L+ + +R+ S ++P + +F+ NL + ++L F +G ++
Sbjct: 84 VLNFTPLNNKPIRIMYSH----RDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNIL 139
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKR 272
++ D +G S+GYGFV + ++A+ LN + L + + V + K+
Sbjct: 140 SCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQ 191
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ NL ++D L +G+ ++ D SG S+G+ FV E + I+ L
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKL 172
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETE-HKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
+G + + V + + ++ + + ++V NLS +VT + L F EYGT+ A
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSA 232
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGR 261
V+ D + G+S+ +GFV + A+ +LN + + +
Sbjct: 233 VVMRDVD-GKSKCFGFVNFENADAAAEAVEALNGKKFDDK 271
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L + +D L G I+V+ ++ + ++ G+ FV + V++
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 163 DGKEFLG--RTLRVNLSDKPKPKEPLYPETEHK---------LFVGNLSWTVTSESLIQV 211
G + R+N + + +HK +FVG+L+ VT L++
Sbjct: 155 AGMLMPNTEQPFRLNWA--------TFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLET 206
Query: 212 FQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEG 270
F + Y +V A+V++D TGRS+GYGFV + E AL +N V RA+R+ A
Sbjct: 207 FSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATP 266
Query: 271 KRS 273
++S
Sbjct: 267 RKS 269
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TK+Y G +PY + E G+ I + D+GK RG A ++ +
Sbjct: 220 TKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALA 279
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKE--PLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
LDG + G L++ + P E ++++VG+LSW +T E L + F V
Sbjct: 280 -LDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNC-NV 337
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
R+ D ETG RGY V + L+TAL +L+ L GR +R+S A
Sbjct: 338 KAIRLGMDKETGEFRGYAHVDFGDSQSLKTAL-ALDQSVLFGRPVRISCA 386
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ NL S +L E+G+ V+ D D GKS+ F FV +D +E L
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEAL 273
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKL--------------------FVGNLSWT 202
+GK+ + V + K E EH+L +V NL +
Sbjct: 274 NGKKIDDKEWYVGKAQKKS-------EREHELKIKFEQSMKEAADKYQGANLYVKNLDDS 326
Query: 203 VTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRA 262
+ E L ++F YGT+ +V+ D G SRG GFV +S E AL+ +N + +
Sbjct: 327 IADEKLKELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKP 385
Query: 263 IRVSLAEGK 271
+ V+LA+ K
Sbjct: 386 LYVTLAQRK 394
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 6/166 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G+L +V +QL L + G + V D + +S G+ +V S +D ++
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEP-LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
L+ R +R+ S ++P + + +F+ NL + ++L F +G ++
Sbjct: 94 VLNFTPLNNRPIRIMYSH----RDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNIL 149
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
+V DG +G+S+GYGFV + + A+ LN + L + + V
Sbjct: 150 SCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 21/179 (11%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ NL ++D L +G+ +V D SG+S+G+ FV E IE L
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 163 DGK----------EFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 212
+G FL + R + D+ K + +FV NLS + T + L + F
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGDRAK---------FNNVFVKNLSESTTDDELKKTF 233
Query: 213 QEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
E+GT+ A V+ DG+ G+S+ +GFV + + A+ +LN +++ + V A+ K
Sbjct: 234 GEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKK 291
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL +P+ VD+ L + +YG E V+ +R +G+SRGF +VT + V+D V
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 162 LDGKEFLG-RTLRVNLSDKPKPKEPLYPETEH--KLFVGNLSWTVTSESLIQVFQEYGTV 218
L G+ LG R L V ++ PKE + + ++FV + +VT E+ F++YG +
Sbjct: 62 LSGEHVLGDRMLEVKVA---TPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDI 118
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+ D + RG GF+ + +E + + EL G A+ V A K
Sbjct: 119 TDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPK 169
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L + +D L G I+V+ ++ + ++ G+ FV + V++
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 163 DGKEFLG--RTLRVNLSDKPKPKEPLYPETEHK---------LFVGNLSWTVTSESLIQV 211
G + R+N + + +HK +FVG+L+ VT L++
Sbjct: 155 AGMLMPNTEQPFRLNWA--------TFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLET 206
Query: 212 FQE-YGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEG 270
F + Y +V A+V++D TGRS+GYGFV + E AL +N V RA+R+ A
Sbjct: 207 FSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATP 266
Query: 271 KRS 273
++S
Sbjct: 267 RKS 269
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 20/178 (11%)
Query: 103 LYFGNLPYSV-DSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
++ G+L V D+ L ++Y S + +V++D ++G+S+G+ FV + + +
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 162 LDGKEFLGRTLRVNLSDKPK-------------PKEPLYPETEHKLFVGNLSWTVTSESL 208
++G R +R+ + K P + T +FVG L + T+E L
Sbjct: 249 MNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDL 308
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
Q F +YG +V ++ +G GFV ++ R+ E AL LN + + +R+S
Sbjct: 309 RQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLS 360
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL +P+ VD+ L + +YG E V+ +R +G+SRGF +VT + V+D V
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 162 LDGKEFLG-RTLRVNLSDKPKPKEPLYPETEH--KLFVGNLSWTVTSESLIQVFQEYGTV 218
L G+ LG R L V ++ PKE + + ++FV + +VT E+ F++YG +
Sbjct: 62 LSGEHVLGDRMLEVKVA---TPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDI 118
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+ D + RG GF+ + +E + + EL G A+ V A K
Sbjct: 119 TDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPK 169
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL +P+ VD+ L + +YG E V+ +R +G+SRGF +VT + V+D V
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 162 LDGKEFLG-RTLRVNLSDKPKPKEPLYPETEH--KLFVGNLSWTVTSESLIQVFQEYGTV 218
L G+ LG R L V ++ PKE + + ++FV + +VT E+ F++YG +
Sbjct: 62 LSGEHVLGDRMLEVKVA---TPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDI 118
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+ D + RG GF+ + +E + + EL G A+ V A K
Sbjct: 119 TDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPK 169
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 11/173 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL +P+ VD+ L + +YG E V+ +R +G+SRGF +VT + V+D V
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV--- 61
Query: 162 LDGKEFLG-RTLRVNLSDKPKPKEPLYPETEH--KLFVGNLSWTVTSESLIQVFQEYGTV 218
L G+ LG R L V ++ PKE + + ++FV + +VT E+ F++YG +
Sbjct: 62 LSGEHVLGDRMLEVKVA---TPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDI 118
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
+ D + RG GF+ + +E + + EL G A+ V A K
Sbjct: 119 TDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRATPK 169
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 11/176 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ G L AQ +YG ++ DR +G+ RGF F+T + + VIE+
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 162 ---LDGKEF-LGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT 217
++ K+ + RT+ P+ K+FVG + VT + F YG
Sbjct: 106 SHIINSKQVEIKRTI-------PRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGE 158
Query: 218 VVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGKRS 273
V +++ D T RSRG+GFV + ++ L N +E G + + AE K++
Sbjct: 159 VKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKA 214
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P T KLFVG +S+ +SL F +YG V+ AR++ D E+GRS+G+GFV Y+ E
Sbjct: 42 PNT--KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEAS 99
Query: 248 TALISLNNVELEGRAIRVSLAE 269
+A+ +L+ +L GR + V+ A
Sbjct: 100 SAIQALDGQDLYGRRVGVNFAN 121
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TKL+ G + Y+ D L+ +YG ++ DR+SG+S+GF FVT + VE+ ++ I+
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKE 184
LDG++ GR + VN +++ +P++
Sbjct: 104 ALDGQDLYGRRVGVNFANE-RPRD 126
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P T KLFVG +S+ +SL F +YG V+ AR++ D E+GRS+G+GFV Y+ E
Sbjct: 42 PNT--KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEAS 99
Query: 248 TALISLNNVELEGRAIRVSLAE 269
+A+ +L+ +L GR + V+ A
Sbjct: 100 SAIQALDGQDLYGRRVGVNFAN 121
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
TKL+ G + Y+ D L+ +YG ++ DR+SG+S+GF FVT + VE+ ++ I+
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKE 184
LDG++ GR + VN +++ +P++
Sbjct: 104 ALDGQDLYGRRVGVNFANE-RPRD 126
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y GN+ V L + G E ++ S + F+ I L
Sbjct: 64 VYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 119
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
+G+ G+ ++VN + +E + +FVG+LS VT +L F Y + AR
Sbjct: 120 NGRHLFGQPIKVNWAYASGQREDT--SGHYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 177
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
V++D +TGRSRG+GFV + + + ++A+ L L R IR + A
Sbjct: 178 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWA 223
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 50/75 (66%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L++G L T+ + LIQ+FQ++G +V A+V+ D TG S+GYGFV Y+ + A++++
Sbjct: 453 LYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIVAM 512
Query: 254 NNVELEGRAIRVSLA 268
N LEGR I V +A
Sbjct: 513 NGYRLEGRTIAVRVA 527
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G LP +++ L L +++G + +V+ DR +G S+G+ FV + + N I
Sbjct: 451 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIV 510
Query: 161 NLDGKEFLGRTLRVNLSDK 179
++G GRT+ V ++ K
Sbjct: 511 AMNGYRLEGRTIAVRVAGK 529
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y +D L G ++V+ ++ + +S G+ F+ + V++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 163 DGKEFL--GRTLRVNLSDKPKPKEPLYPE--TEHKLFVGNLSWTVTSESLIQVFQ-EYGT 217
+G G+ R+N + + + +H +FVG+L+ VT L + F+ Y +
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNS 181
Query: 218 VVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
V GA+V+ D TGRS+GYGFV ++ E A+ + V R +R+ A K
Sbjct: 182 VKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+ LY G+L +V+ AQL L + + V D+ + S G+ +V S D +E
Sbjct: 25 SSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAME 84
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEH-KLFVGNLSWTVTSESLIQVFQEYGTVV 219
NL+ G+ +R+ S ++PL +T LF+ NL ++ +++L + F +G V+
Sbjct: 85 NLNYVPLNGKPIRIMFSH----RDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVL 140
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
+V D G S+G+GFV + + A+ L+ + + + + V
Sbjct: 141 SCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYV 185
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 16/185 (8%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NL S L L +G + ++ D+G S+ F FV + T +E
Sbjct: 200 TNVYVKNLSESYTYEDLKQLFNSFGVITSVLIM-KYDNGNSKCFGFVNFQSSDSAATAVE 258
Query: 161 NLDGKEF-LGRTLRVNLSDKPKPKEP---LYPETEH----------KLFVGNLSWTVTSE 206
L+G G+ L V + K +E + E E L++ N+ ++ E
Sbjct: 259 KLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEE 318
Query: 207 SLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
L ++F E+GT+ +V+ D GRS+G GFV ++ E A+ +N + + + VS
Sbjct: 319 KLKELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVS 377
Query: 267 LAEGK 271
+A+ K
Sbjct: 378 VAQRK 382
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y +D L G ++V+ ++ + +S G+ F+ + V++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 163 DGKEFL--GRTLRVNLSDKPKPKEPLYPE--TEHKLFVGNLSWTVTSESLIQVFQ-EYGT 217
+G G+ R+N + + + +H +FVG+L+ VT L + F+ Y +
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNS 181
Query: 218 VVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
V GA+V+ D TGRS+GYGFV ++ E A+ + V R +R+ A K
Sbjct: 182 VKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 5/174 (2%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y +D L G ++V+ ++ + +S G+ F+ + V++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 163 DGKEFL--GRTLRVNLSDKPKPKEPLYPE--TEHKLFVGNLSWTVTSESLIQVFQ-EYGT 217
+G G+ R+N + + + +H +FVG+L+ VT L + F+ Y +
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNS 181
Query: 218 VVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
V GA+V+ D TGRS+GYGFV ++ E A+ + V R +R+ A K
Sbjct: 182 VKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 25/184 (13%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ G+L Y +D L G ++V+ ++ + +S G+ F+ + V++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 163 DGKEFL--GRTLRVNLS------------DKPKPKEPLYPETEHKLFVGNLSWTVTSESL 208
+G G+ R+N + D P +H +FVG+L+ VT L
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGP----------DHTIFVGDLAADVTDYLL 171
Query: 209 IQVFQ-EYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
+ F+ Y +V GA+V+ D TGRS+GYGFV ++ E A+ + V R +R+
Sbjct: 172 QETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGP 231
Query: 268 AEGK 271
A K
Sbjct: 232 ATNK 235
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 20/157 (12%)
Query: 124 YGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPK 183
Y S + +V+ DR +G+S+G+ FV + + + + G R +R+ + P
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPA 238
Query: 184 EPLYPETEHK--------------LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGET 229
P+ + +FVGNL VT + L QVF +YG +V ++ +
Sbjct: 239 ATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKI----PS 294
Query: 230 GRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVS 266
G+ GFV +S RS E A+ LN L G+ +R+S
Sbjct: 295 GKR--CGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLS 329
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 82/166 (49%), Gaps = 6/166 (3%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T LY G+L +V+ +QL L + G + V D + +S G+ +V + +D ++
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 161 NLDGKEFLGRTLRVNLSDK-PKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
L+ +++RV S + P ++ +F+ NL T+ ++L F +G ++
Sbjct: 92 VLNFTPMNNKSIRVMYSHRDPSSRK----SGTANIFIKNLDKTIDHKALHDTFSSFGQIM 147
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
++ DG +G+S+GYGFV + + A+ LN + + + + V
Sbjct: 148 SCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFV 192
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
+Y NL S L YG+ ++ D D G+S+ F FV ED +E L
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEAL 271
Query: 163 DGKEFLGRTLRVNLSDKPKPKEP----LYPETEHK----------LFVGNLSWTVTSESL 208
+GK+ + V + K +E + +T + L++ NL ++T E L
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKL 331
Query: 209 IQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
++F E+GT+ +++ D G SRG GFV +S E AL +N + + + V++A
Sbjct: 332 KEMFSEFGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVA 390
Query: 269 EGK 271
+ K
Sbjct: 391 QRK 393
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ NL ++D L +G ++ D SG+S+G+ FV + I+ L
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 163 DG------KEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYG 216
+G + F+G LR D K + ++V NLS + T + L F YG
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLSKTKF-----NNVYVKNLSESFTEDDLKNEFGAYG 235
Query: 217 TVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
T+ A ++ D + GRS+ +GFV + + A+ +LN +++ + V A+ K
Sbjct: 236 TITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKK 289
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 180 PKPKEPLYPETEHK-----LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRG 234
P P + P ++ L+VG+L V L +F + G VV RV D T RS G
Sbjct: 15 PAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLG 74
Query: 235 YGFVCYSKRSELETALISLNNVELEGRAIRV 265
YG+V ++ + AL LN + ++IRV
Sbjct: 75 YGYVNFTNPQDAARALDVLNFTPMNNKSIRV 105
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFVG LS+ T ++L F YG VV A+V+ D + +S+GYGFV ++ + E E A+
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 253 LNNVELEGRAIRVSLA--EGKRS 273
+N L GR + V A + KRS
Sbjct: 93 MNEKALNGRVVFVDYAKPDTKRS 115
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 188 PETEHK-LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 246
P+++H+ +FVGN+ + T E L ++ +E G V+ R++ D ETG+ +GYGF Y+
Sbjct: 24 PQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETA 83
Query: 247 ETALISLNNVELEGRAIRVSLAEGKR 272
+A +L E+ GR +RV AE +
Sbjct: 84 LSARRNLQGYEINGRQLRVDFAENDK 109
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ GN+PY QL + E G ++ DR++GK +G+ F + E + NL
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 163 DGKEFLGRTLRVNLSDKPK 181
G E GR LRV+ ++ K
Sbjct: 91 QGYEINGRQLRVDFAENDK 109
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Query: 193 KLFVGNL--------SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRS 244
KLF+G + S++ SL + F YG V+ AR++ D ETGRSRG+GF+ ++
Sbjct: 43 KLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVE 102
Query: 245 ELETALISLNNVELEGRAIRVSLA 268
E +A+ +L+ +L GR +RV+ A
Sbjct: 103 EASSAIQALDGQDLHGRRVRVNYA 126
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 101 TKLYFGNL--------PYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCV 152
TKL+ G + YS D L YG ++ DR++G+SRGF F+T + V
Sbjct: 42 TKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSV 101
Query: 153 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPK 183
E+ ++ I+ LDG++ GR +RVN +++ +P+
Sbjct: 102 EEASSAIQALDGQDLHGRRVRVNYANE-RPR 131
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G++P + + L EE+G+ + ++ DR +G+ +G F+ + E+ + I
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 162 LDGKEFLG---RTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
L + L ++V +D + + E+KLFVG+L+ + + + +VF +YG +
Sbjct: 149 LHNRHTLPGGVGPIQVRYADGERER---LGAVEYKLFVGSLNKQASVKEVEEVFSKYGRI 205
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV-ELEG--RAIRVSLAEGKR 272
++ D + +SRG GFV YS R A+ +LN + + G + + V A+ KR
Sbjct: 206 EDVYLMRDDQK-QSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKR 261
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 13/142 (9%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P S L E G + ++ +D+ +++GFAFVT VE + IE
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-VV 219
L+ EF GR ++ + S + +++LF+GN+ + + L +V + G V
Sbjct: 170 ELNNTEFKGRKIKCSTS-----------QAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVT 218
Query: 220 GARVLYDGET-GRSRGYGFVCY 240
++ D + +RG+ F+ Y
Sbjct: 219 AVELVKDMKNISNNRGFAFIDY 240
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 175 NLSDKPKPKEP---LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGR 231
NL D K K P + +++VG + SE L + + G VV R++ +
Sbjct: 90 NLDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASE 149
Query: 232 SRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAEGK 271
++G+ FV Y A+ LNN E +GR I+ S ++ K
Sbjct: 150 NKGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAK 189
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 36/192 (18%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + + + +L YG V+ ++++GK RGF FV S + V+E
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE- 65
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEH-------------------------KLFV 196
D GRT+ K E + K+FV
Sbjct: 66 -DKHVIDGRTVDA--------KRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFV 116
Query: 197 GNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV 256
G L T+ E Q F+ YG V V+YD TGR RG+GF+ + ++ L +
Sbjct: 117 GGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFH- 175
Query: 257 ELEGRAIRVSLA 268
+L G+ + V A
Sbjct: 176 DLNGKQVEVKRA 187
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 77/192 (40%), Gaps = 36/192 (18%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G + + + +L YG V+ ++++GK RGF FV S + V+E
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE- 65
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEH-------------------------KLFV 196
D GRT+ K E + K+FV
Sbjct: 66 -DKHVIDGRTVDA--------KRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFV 116
Query: 197 GNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV 256
G L T+ E Q F+ YG V V+YD TGR RG+GF+ + ++ L +
Sbjct: 117 GGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFH- 175
Query: 257 ELEGRAIRVSLA 268
+L G+ + V A
Sbjct: 176 DLNGKQVEVKRA 187
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY G+L SV+ QL L + I V D+ S G+A+V + +D E L
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 163 DGKEFLGRTLRVNLSDKPKPKEP-LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
+ + +R+ S ++P + +F+ NL ++ ++L F +G V+
Sbjct: 92 NFTPLNEKPIRIMFSQ----RDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSC 147
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
+V DG G+S+GYGFV + ++A+ L+ + + + + V
Sbjct: 148 KVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGF 192
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 26/190 (13%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y N+ + L L +G V+ D + GKSR F FV + +E
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDAN-GKSRCFGFVNFQSPDSAAAAVE 267
Query: 161 NLDGKE-------FLGRTLRVNLSDKPKPKEPLYPETEHK------------LFVGNLSW 201
L+G F+GR R K + + L + E + L++ NL
Sbjct: 268 KLNGTAINDDKVLFVGRAQR-----KAERENELKAKFEQERISRYEKLQGANLYLKNLDD 322
Query: 202 TVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGR 261
E L +F E+GTV RV+ D G S+G GFV +S E AL +N + +
Sbjct: 323 DFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRK 381
Query: 262 AIRVSLAEGK 271
+ V++A+ K
Sbjct: 382 PLFVAVAQRK 391
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY G+L SV+ QL L + I V D+ S G+A+V + +D E L
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 163 DGKEFLGRTLRVNLSDKPKPKEP-LYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
+ + +R+ S ++P + +F+ NL ++ ++L F +G V+
Sbjct: 92 NFTPLNEKPIRIMFSQ----RDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSC 147
Query: 222 RVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
+V DG G+S+GYGFV + ++A+ L+ + + + + V
Sbjct: 148 KVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGF 192
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 26/190 (13%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y N+ + L L +G V+ D + GKSR F FV + +E
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDAN-GKSRCFGFVNFQSPDSAAAAVE 267
Query: 161 NLDGKE-------FLGRTLRVNLSDKPKPKEPLYPETEHK------------LFVGNLSW 201
L+G F+GR R K + + L + E + L++ NL
Sbjct: 268 KLNGTAINDDKVLFVGRAQR-----KAERENELKAKFEQERISRYEKLQGANLYLKNLDD 322
Query: 202 TVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGR 261
E L +F E+GTV RV+ D G S+G GFV +S E AL +N + +
Sbjct: 323 DFNEEKLKDLFSEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRK 381
Query: 262 AIRVSLAEGK 271
+ V++A+ K
Sbjct: 382 PLFVAVAQRK 391
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P S L E G + ++ +D+ +++GFAFVT VE + IE
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L+ EF GR ++ + S + +++LF+GN+ + + L +V + G V
Sbjct: 170 ELNNTEFKGRKIKCSTS-----------QAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVT 218
Query: 221 ARVLYDG--ETGRSRGYGFVCY 240
A L +RG+ F+ Y
Sbjct: 219 AVELVKDMKNISNNRGFAFIDY 240
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYD-RDSGKSRGFAFVTMSCVEDCNTV 158
+L+ GN+P S L ++ + G +E++ D ++ +RGFAF+ +
Sbjct: 190 NRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYG 249
Query: 159 IENLDGKEF-LG-RTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYG 216
+ + F LG + V+ +D PK + ++V NL VT E L ++F+ +G
Sbjct: 250 RQKMMSPSFKLGDNSPTVSWAD-PKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHG 308
Query: 217 TVVGARVLYDGETGRSRG-YGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ VL ++G+ + GFV +++RS AL + EL+G+ + SLA+
Sbjct: 309 KITKV-VLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAK 361
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P + +++VG + SE L + + G VV R++ + ++G+ FV Y
Sbjct: 106 PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELAS 165
Query: 248 TALISLNNVELEGRAIRVSLAEGK 271
A+ LNN E +GR I+ S ++ K
Sbjct: 166 KAIEELNNTEFKGRKIKCSTSQAK 189
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P S L E G + ++ +D+ +++GFAFVT VE + IE
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L+ EF GR ++ + S + +++LF+GN+ + + L +V + G V
Sbjct: 170 ELNNTEFKGRKIKCSTS-----------QAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVT 218
Query: 221 ARVLYDG--ETGRSRGYGFVCY 240
A L +RG+ F+ Y
Sbjct: 219 AVELVKDMKNISNNRGFAFIDY 240
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYD-RDSGKSRGFAFVTMSCVEDCNTV 158
+L+ GN+P S L ++ + G +E++ D ++ +RGFAF+ +
Sbjct: 190 NRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYG 249
Query: 159 IENLDGKEF-LG-RTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYG 216
+ + F LG + V+ +D PK + ++V NL VT E L ++F+ +G
Sbjct: 250 RQKMMSPSFKLGDNSPTVSWAD-PKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHG 308
Query: 217 TVVGARVLYDGETGRSRG-YGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ VL ++G+ + GFV +++RS AL + EL+G+ + SLA+
Sbjct: 309 KITKV-VLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAK 361
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P + +++VG + SE L + + G VV R++ + ++G+ FV Y
Sbjct: 106 PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELAS 165
Query: 248 TALISLNNVELEGRAIRVSLAEGK 271
A+ LNN E +GR I+ S ++ K
Sbjct: 166 KAIEELNNTEFKGRKIKCSTSQAK 189
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P S L E G + ++ +D+ +++GFAFVT VE + IE
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
L+ EF GR ++ + S + +++LF+GN+ + + L +V + G V
Sbjct: 170 ELNNTEFKGRKIKCSTS-----------QAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVT 218
Query: 221 ARVLYDG--ETGRSRGYGFVCY 240
A L +RG+ F+ Y
Sbjct: 219 AVELVKDMKNISNNRGFAFIDY 240
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYD-RDSGKSRGFAFVTMSCVEDCNTV 158
+L+ GN+P S L ++ + G +E++ D ++ +RGFAF+ +
Sbjct: 190 NRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYG 249
Query: 159 IENLDGKEF-LG-RTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYG 216
+ + F LG + V+ +D PK + ++V NL VT E L ++F+ +G
Sbjct: 250 RQKMMSPSFKLGDNSPTVSWAD-PKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHG 308
Query: 217 TVVGARVLYDGETGRSRG-YGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ VL ++G+ + GFV +++RS AL + EL+G+ + SLA+
Sbjct: 309 KITKV-VLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELDGQNLECSLAK 361
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 188 PETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELE 247
P + +++VG + SE L + + G VV R++ + ++G+ FV Y
Sbjct: 106 PPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELAS 165
Query: 248 TALISLNNVELEGRAIRVSLAEGK 271
A+ LNN E +GR I+ S ++ K
Sbjct: 166 KAIEELNNTEFKGRKIKCSTSQAK 189
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
KLF+G LS+ V +SL F YG VV ARV+ D ETGRSRG+GFV ++ +AL
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
>Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49069532-49073325 | 20130731
Length = 345
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 34/170 (20%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T++Y NLP S D+ L L +G+ EV + ++G+S+G A+VTM +
Sbjct: 43 TQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNALA 102
Query: 161 NLDGKEFLGRTLRVN-----LSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEY 215
LDG + GR + V L+ P + +Y E HK++VGNL +
Sbjct: 103 ALDGSDVGGREMLVKFSVETLNSPPMRRRTIYYEGPHKVYVGNL---------------W 147
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
G +SR Y FV Y + E + A +SLN E GR + V
Sbjct: 148 GK-------------KSRVYAFVSYLSQRERD-ASMSLNGTEFCGRTLVV 183
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 107 NLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKE 166
+P + + G + ++ DR+S +S+G ++ I L G+
Sbjct: 221 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-ALSGQL 279
Query: 167 FLGRTLRVNLSDKPK----------------PKEPLYPETEHKLFVGNLSWTVTSESLIQ 210
LG+ + V S+ K P Y + KL+VGNL + +T L +
Sbjct: 280 LLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP----YGAVDRKLYVGNLHFNMTESQLRE 335
Query: 211 VFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN-NVELEGRAIRVS 266
+F+ +GTV ++ D ETG +G+GF+ ++ E A SLN +E+ GR I+VS
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGRTIKVS 391
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KLY GNL +++ +QL + E +G+ E++++ D ++G +GF F+ + +E ++
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QS 376
Query: 162 LDGK-EFLGRTLRVN 175
L+GK E GRT++V+
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 107 NLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKE 166
+P + + G + ++ DR+S +S+G ++ I L G+
Sbjct: 221 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-ALSGQL 279
Query: 167 FLGRTLRVNLSDKPK----------------PKEPLYPETEHKLFVGNLSWTVTSESLIQ 210
LG+ + V S+ K P Y + KL+VGNL + +T L +
Sbjct: 280 LLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP----YGAVDRKLYVGNLHFNMTESQLRE 335
Query: 211 VFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN-NVELEGRAIRVS 266
+F+ +GTV ++ D ETG +G+GF+ ++ E A SLN +E+ GR I+VS
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGRTIKVS 391
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KLY GNL +++ +QL + E +G+ E++++ D ++G +GF F+ + +E ++
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QS 376
Query: 162 LDGK-EFLGRTLRVN 175
L+GK E GRT++V+
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 23/177 (12%)
Query: 107 NLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKE 166
+P + + G + ++ DR+S +S+G ++ I L G+
Sbjct: 221 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-ALSGQL 279
Query: 167 FLGRTLRVNLSDKPK----------------PKEPLYPETEHKLFVGNLSWTVTSESLIQ 210
LG+ + V S+ K P Y + KL+VGNL + +T L +
Sbjct: 280 LLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP----YGAVDRKLYVGNLHFNMTESQLRE 335
Query: 211 VFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN-NVELEGRAIRVS 266
+F+ +GTV ++ D ETG +G+GF+ ++ E A SLN +E+ GR I+VS
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNGKLEIAGRTIKVS 391
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KLY GNL +++ +QL + E +G+ E++++ D ++G +GF F+ + +E ++
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QS 376
Query: 162 LDGK-EFLGRTLRVN 175
L+GK E GRT++V+
Sbjct: 377 LNGKLEIAGRTIKVS 391
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P+ L + G + V+ +++ +G+AFVT E + ++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALK 157
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-VV 219
L+ EF GR ++ + S + +H+LF+G++ T E + +V + G V+
Sbjct: 158 ELNNSEFKGRKIKCSPS-----------QVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVI 206
Query: 220 GARVLYDGE-TGRSRGYGFVCYSKR--SELETALISLNNVELEGRAIRVSLAEGK 271
+L D + + R+RG+ F+ Y +E +S +N +L+ VS A+ +
Sbjct: 207 SVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPR 261
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAEL-IEVLYD-RDSGKSRGFAFV---TMSCVEDCN 156
+L+ G++P + ++ + G + +E+L D + S ++RGFAF+ +C E
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 157 TVIEN----LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 212
+ N LD + + V+ +D P+ E ++V NL +T L ++F
Sbjct: 239 QKMSNSNFKLDNNDAI-----VSWAD-PRNSESSSSSQVKAVYVKNLPENITQNRLKELF 292
Query: 213 QEYGTVVGARVLYDGETGRSRG-YGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ +G + L + G+ + YGFV ++ RS AL + E+ G+ + SLA+
Sbjct: 293 EHHGKITKV-ALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P+ L + G + V+ +++ +G+AFVT E + ++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALK 157
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-VV 219
L+ EF GR ++ + S + +H+LF+G++ T E + +V + G V+
Sbjct: 158 ELNNSEFKGRKIKCSPS-----------QVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVI 206
Query: 220 GARVLYDGE-TGRSRGYGFVCYSKR--SELETALISLNNVELEGRAIRVSLAEGK 271
+L D + + R+RG+ F+ Y +E +S +N +L+ VS A+ +
Sbjct: 207 SVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPR 261
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAEL-IEVLYD-RDSGKSRGFAFV---TMSCVEDCN 156
+L+ G++P + ++ + G + +E+L D + S ++RGFAF+ +C E
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 157 TVIEN----LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 212
+ N LD + + V+ +D P+ E ++V NL +T L ++F
Sbjct: 239 QKMSNSNFKLDNNDAI-----VSWAD-PRNSESSSSSQVKAVYVKNLPENITQNRLKELF 292
Query: 213 QEYGTVVGARVLYDGETGRSRG-YGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ +G + L + G+ + YGFV ++ RS AL + E+ G+ + SLA+
Sbjct: 293 EHHGKITKV-ALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P+ L + G + V+ +++ +G+AFVT E + ++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALK 157
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-VV 219
L+ EF GR ++ + S + +H+LF+G++ T E + +V + G V+
Sbjct: 158 ELNNSEFKGRKIKCSPS-----------QVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVI 206
Query: 220 GARVLYDGE-TGRSRGYGFVCYSKR--SELETALISLNNVELEGRAIRVSLAEGK 271
+L D + + R+RG+ F+ Y +E +S +N +L+ VS A+ +
Sbjct: 207 SVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPR 261
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAEL-IEVLYD-RDSGKSRGFAFV---TMSCVEDCN 156
+L+ G++P + ++ + G + +E+L D + S ++RGFAF+ +C E
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 157 TVIEN----LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 212
+ N LD + + V+ +D P+ E ++V NL +T L ++F
Sbjct: 239 QKMSNSNFKLDNNDAI-----VSWAD-PRNSESSSSSQVKAVYVKNLPENITQNRLKELF 292
Query: 213 QEYGTVVGARVLYDGETGRSRG-YGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ +G + L + G+ + YGFV ++ RS AL + E+ G+ + SLA+
Sbjct: 293 EHHGKITKV-ALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAK 349
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P+ L + G + V+ +++ +G+AFVT E + ++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---KGYAFVTFKTKELASKALK 157
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-VV 219
L+ EF GR ++ + S + +H+LF+G++ T E + +V + G V+
Sbjct: 158 ELNNSEFKGRKIKCSPS-----------QVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVI 206
Query: 220 GARVLYDGE-TGRSRGYGFVCYSKR--SELETALISLNNVELEGRAIRVSLAEGK 271
+L D + + R+RG+ F+ Y +E +S +N +L+ VS A+ +
Sbjct: 207 SVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPR 261
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 17/178 (9%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAEL-IEVLYD-RDSGKSRGFAFV---TMSCVEDCN 156
+L+ G++P + ++ + G + +E+L D + S ++RGFAF+ +C E
Sbjct: 179 RLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSR 238
Query: 157 TVIEN----LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVF 212
+ N LD + + V+ +D P+ E ++V NL +T L ++F
Sbjct: 239 QKMSNSNFKLDNNDAI-----VSWAD-PRNSESSSSSQVKAVYVKNLPENITQNRLKELF 292
Query: 213 QEYGTVVGARVLYDGETGRSRG-YGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ +G + L + G+ + YGFV ++ RS AL + E+ G+ + SLA+
Sbjct: 293 EHHGKITKV-ALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAK 349
>Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883965-21877390 | 20130731
Length = 865
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ +V+ +L L E+YG I LY + K RGF ++ + T + L
Sbjct: 198 LFVRNINSNVEDTELRTLFEQYGD---IRTLYT--ACKHRGFVMISYYDIRAARTAMRAL 252
Query: 163 DGKEFLGRTLRVNLS---DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K R L ++ S D P K+ + L V NL +V++E L Q+F YG V
Sbjct: 253 QNKPLRRRKLDIHFSIPKDNPSDKDI----NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 308
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
R ET R + F+ Y E AL SLN ++ G+ I++
Sbjct: 309 EIR-----ETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKL 349
>Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883858-21877390 | 20130731
Length = 865
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 17/166 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ +V+ +L L E+YG I LY + K RGF ++ + T + L
Sbjct: 198 LFVRNINSNVEDTELRTLFEQYGD---IRTLYT--ACKHRGFVMISYYDIRAARTAMRAL 252
Query: 163 DGKEFLGRTLRVNLS---DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K R L ++ S D P K+ + L V NL +V++E L Q+F YG V
Sbjct: 253 QNKPLRRRKLDIHFSIPKDNPSDKDI----NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 308
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
R ET R + F+ Y E AL SLN ++ G+ I++
Sbjct: 309 EIR-----ETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKL 349
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 15/176 (8%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ NL S+D+ L +G+ +V D + GKS G+ FV E IE L
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSN-GKSLGYGFVQYDNHESAKCAIEKL 75
Query: 163 DG------KEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYG 216
DG K F+G +R ++ + P + ++V NL T T E L ++F YG
Sbjct: 76 DGMLIKDKKAFVGYFIR--RQERSENGSPKFT----NVYVKNLLETDTDEDLKKLFSTYG 129
Query: 217 TVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVEL-EGRAIRVSLAEGK 271
+ A ++ D E G S+ +GFV + A+ LN +G+ + V A+ K
Sbjct: 130 VITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRK 184
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 22/188 (11%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
T +Y NL + L L YG ++ D ++G S+ F FV + +E
Sbjct: 105 TNVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVE 163
Query: 161 NLDGKE-------FLGRT---------LRVNL-SDKPKPKEPLYPETEHKLFVGNLSWTV 203
L+G ++GR LR +K K E L L++ NL ++
Sbjct: 164 KLNGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGAN---LYLKNLDESI 220
Query: 204 TSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAI 263
E L ++F E+GT+ +V++D G S+G+GFV +S E A+ ++ + + +
Sbjct: 221 NDEKLKEMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPL 279
Query: 264 RVSLAEGK 271
V +A+ K
Sbjct: 280 YVVVAQRK 287
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 22/176 (12%)
Query: 107 NLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENLDGKE 166
+P + + G + ++ DR+S +S+G ++ I L G+
Sbjct: 208 QMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-ALSGQL 266
Query: 167 FLGRTLRVNLSDKPK---------------PKEPLYPETEHKLFVGNLSWTVTSESLIQV 211
LG+ + V S+ K P Y + KL+VGNL + +T +L ++
Sbjct: 267 LLGQPVMVKPSEAEKNLVQSNASSGAAVVGP----YGAVDRKLYVGNLHFNMTEANLREI 322
Query: 212 FQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN-NVELEGRAIRVS 266
F+ +G + ++ D ETG +G+GFV ++ E A SLN +E+ GR I+VS
Sbjct: 323 FEPFGQIEVVQLPLDMETGHCKGFGFVQFA-HLEHAKAAQSLNGKLEIAGRTIKVS 377
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KLY GNL +++ A L + E +G E++++ D ++G +GF FV + +E ++
Sbjct: 304 KLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA-QS 362
Query: 162 LDGK-EFLGRTLRVN 175
L+GK E GRT++V+
Sbjct: 363 LNGKLEIAGRTIKVS 377
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 187 YPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 246
+PE +++LF G+L V + L + F + + ARV+ D TG+++GYGF+ ++ ++L
Sbjct: 127 WPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADL 186
Query: 247 ETALISLNNVELEGRAIRV 265
AL +N + R I++
Sbjct: 187 AAALKEMNGKYVGNRPIKL 205
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 27/189 (14%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
KL+ G + L +YG + +DR + RGF FVT S + + ++
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ 69
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPE-----------------TEH----KLFVGNL 199
D LGR + V K P+ + EH K+FVG L
Sbjct: 70 --DTHAILGRKVEVR---KAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGL 124
Query: 200 SWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELE 259
++ E + F+ +G + V+ D T R RG+GF+ + +++ ++ + +L
Sbjct: 125 PANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFH-DLN 183
Query: 260 GRAIRVSLA 268
GR + V A
Sbjct: 184 GRQVEVKRA 192
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FV L+++ T E L + F +YG VV A ++ + R +G+G+V +++ E A I
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 253 LNNVELEGRAIRVSL 267
+N L GR + V +
Sbjct: 93 MNGKILHGRVLYVDM 107
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T KLFV LS T+E+L VF YG + A V++D TGRS+GYGFV Y ++ A
Sbjct: 74 TRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY---RHVDGA 130
Query: 250 LISLNNV--ELEGRAIRVSLA 268
+++L +++GR LA
Sbjct: 131 VLALKEPSKKIDGRMTVTQLA 151
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ L + L + YG + V++D+ +G+S+G+ FV V+ ++
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGA 221
K+ GR L+ + + K+FVGN+ + V++ESL+ F +YG +
Sbjct: 137 PS-KKIDGRMTVTQLAAAGSTGGDV---SSRKVFVGNVPFEVSAESLLSEFSKYGEIEEG 192
Query: 222 RVLYDGETGRSRGYGFVCY 240
+ +D +G++RG+ F Y
Sbjct: 193 PLGFDKASGKTRGFAFFVY 211
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 250 L 250
L
Sbjct: 185 L 185
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 250 L 250
L
Sbjct: 185 L 185
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 250 L 250
L
Sbjct: 185 L 185
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 250 L 250
L
Sbjct: 185 L 185
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W SE++ + F+++G ++ A V+ D TGRS+GYGFV + A
Sbjct: 27 TYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 86
Query: 250 LISLNNVELEGRAIRVSLAEGKRS 273
+ V ++GR +LA R
Sbjct: 87 CADPSPV-IDGRRANCNLASHGRP 109
>Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16170586-16165028 | 20130731
Length = 751
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ +V+ ++L L E+YG I LY + K RGF ++ + T + L
Sbjct: 95 LFVRNINSNVEDSELRTLFEQYGD---IRTLYT--ACKHRGFVMISYYDIRAARTAMRAL 149
Query: 163 DGKEFLGRTLRVNLS---DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K R L ++ S D P K+ + L V NL +V+++ L Q+F YG V
Sbjct: 150 QNKPLRRRKLDIHFSIPKDNPSEKD----INQGTLVVFNLDPSVSNDDLRQIFGAYGEVK 205
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
R ET R + F+ + + AL +LN ++ G+ I++
Sbjct: 206 EIR-----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL 246
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G +P + +L L +E+ + + ++ D+ + SRG FV ++ + +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 162 LDGKEFL---GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
K+ L L+V +D EHKLF+G L ++ + +F +YGT+
Sbjct: 77 CHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNISEVEVSALFSKYGTI 130
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLN-NVELEGRAI 263
++L G S+G F+ Y + + AL ++N ++EG ++
Sbjct: 131 KDLQIL-RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 175
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W SE++ + F+++G ++ A V+ D TGRS+GYGFV + A
Sbjct: 27 TYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 86
Query: 250 LISLNNVELEGRAIRVSLAEGKR 272
+ V ++GR +LA R
Sbjct: 87 CADPSPV-IDGRRANCNLASHGR 108
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
+ K+FV L W TS +LI F +YG + + + D +G+S+GYGF+ + +RS A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 250 L 250
L
Sbjct: 185 L 185
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G +P + +L L +E+ + + ++ D+ + SRG FV ++ + +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 162 LDGKEFL---GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
K+ L L+V +D EHKLF+G L ++ + +F +YGT+
Sbjct: 77 CHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNISEVEVSALFSKYGTI 130
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV-ELEGRAI 263
++L G S+G F+ Y + + AL ++N ++EG ++
Sbjct: 131 KDLQIL-RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 175
>Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165361 | 20130731
Length = 876
Score = 55.5 bits (132), Expect = 5e-08, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ +V+ ++L L E+YG I LY + K RGF ++ + T + L
Sbjct: 200 LFVRNINSNVEDSELRTLFEQYGD---IRTLYT--ACKHRGFVMISYYDIRAARTAMRAL 254
Query: 163 DGKEFLGRTLRVNLS---DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K R L ++ S D P K+ + L V NL +V+++ L Q+F YG V
Sbjct: 255 QNKPLRRRKLDIHFSIPKDNPSEKDI----NQGTLVVFNLDPSVSNDDLRQIFGAYGEVK 310
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
R ET R + F+ + + AL +LN ++ G+ I++
Sbjct: 311 EIR-----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL 351
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T KLF+ LS T E L + F +G ++ A+V+ D +GRS+G+ FV YS E E A
Sbjct: 33 TSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKA 92
Query: 250 LISLNNVELEGRAIRVSLAEGK 271
+N L+G I V A+ +
Sbjct: 93 REGMNAKFLDGWVIFVDPAKPR 114
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
+FVG + + T +I VF +YG VV ++ D TG+S+G+ F+ Y + A+ +L
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 254 NNVELEGRAIRVS 266
N ++ GR IRV
Sbjct: 98 NGAQVSGRIIRVD 110
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ G +P+ + + +YG I ++ D+ +GKS+GFAF+ N ++NL
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 163 DGKEFLGRTLRVNLSD 178
+G + GR +RV+ D
Sbjct: 98 NGAQVSGRIIRVDHVD 113
>Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 856
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ +V+ ++L L E+YG I LY + K RGF ++ + T + L
Sbjct: 200 LFVRNINSNVEDSELRTLFEQYGD---IRTLYT--ACKHRGFVMISYYDIRAARTAMRAL 254
Query: 163 DGKEFLGRTLRVNLS---DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K R L ++ S D P K+ + L V NL +V+++ L Q+F YG V
Sbjct: 255 QNKPLRRRKLDIHFSIPKDNPSEKDI----NQGTLVVFNLDPSVSNDDLRQIFGAYGEVK 310
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
R ET R + F+ + + AL +LN ++ G+ I++
Sbjct: 311 EIR-----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL 351
>Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 853
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ +V+ ++L L E+YG I LY + K RGF ++ + T + L
Sbjct: 197 LFVRNINSNVEDSELRTLFEQYGD---IRTLYT--ACKHRGFVMISYYDIRAARTAMRAL 251
Query: 163 DGKEFLGRTLRVNLS---DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K R L ++ S D P K+ + L V NL +V+++ L Q+F YG V
Sbjct: 252 QNKPLRRRKLDIHFSIPKDNPSEKDI----NQGTLVVFNLDPSVSNDDLRQIFGAYGEVK 307
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
R ET R + F+ + + AL +LN ++ G+ I++
Sbjct: 308 EIR-----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL 348
>Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16172198-16165028 | 20130731
Length = 867
Score = 55.5 bits (132), Expect = 6e-08, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
L+ N+ +V+ ++L L E+YG I LY + K RGF ++ + T + L
Sbjct: 211 LFVRNINSNVEDSELRTLFEQYGD---IRTLYT--ACKHRGFVMISYYDIRAARTAMRAL 265
Query: 163 DGKEFLGRTLRVNLS---DKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K R L ++ S D P K+ + L V NL +V+++ L Q+F YG V
Sbjct: 266 QNKPLRRRKLDIHFSIPKDNPSEKDI----NQGTLVVFNLDPSVSNDDLRQIFGAYGEVK 321
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
R ET R + F+ + + AL +LN ++ G+ I++
Sbjct: 322 EIR-----ETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL 362
>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V+++ + ++F E G + V YD +GRS+G V +S+R +
Sbjct: 91 ETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYD-RSGRSKGTAEVVFSRRQDAVA 149
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ NNV+L+G+ +++ +
Sbjct: 150 AVKRYNNVQLDGKPMKIEI 168
>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V+++ + ++F E G + V YD +GRS+G V +S+R +
Sbjct: 91 ETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYD-RSGRSKGTAEVVFSRRQDAVA 149
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ NNV+L+G+ +++ +
Sbjct: 150 AVKRYNNVQLDGKPMKIEI 168
>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
chr4:23458840-23463583 | 20130731
Length = 263
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
ET KL++ NL + V+++ + ++F E G + V YD +GRS+G V +S+R +
Sbjct: 91 ETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYD-RSGRSKGTAEVVFSRRQDAVA 149
Query: 249 ALISLNNVELEGRAIRVSL 267
A+ NNV+L+G+ +++ +
Sbjct: 150 AVKRYNNVQLDGKPMKIEI 168
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 182 PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 241
P P+ LFVGNLS++V + + FQ+ G VV R D E GR +G+G V ++
Sbjct: 319 PATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFA 377
Query: 242 KRSELETALISLNNVELEGRAIRVSLA 268
++AL +N EL RA+R+ LA
Sbjct: 378 SAEAAQSAL-EMNGQELLQRAVRLDLA 403
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 182 PKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYS 241
P P+ LFVGNLS++V + + FQ+ G VV R D E GR +G+G V ++
Sbjct: 331 PATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFA 389
Query: 242 KRSELETALISLNNVELEGRAIRVSLA 268
++AL +N EL RA+R+ LA
Sbjct: 390 SAEAAQSAL-EMNGQELLQRAVRLDLA 415
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LFVGNLS++V + + FQ+ G VV R D E GR +G+G V ++ ++AL +
Sbjct: 366 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFASAEAAQSAL-EM 423
Query: 254 NNVELEGRAIRVSLA 268
N EL RA+R+ LA
Sbjct: 424 NGQELLQRAVRLDLA 438
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LFVGNLS++V + + FQ+ G VV R D E GR +G+G V ++ ++AL +
Sbjct: 378 LFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSD-EEGRFKGFGHVEFASAEAAQSAL-EM 435
Query: 254 NNVELEGRAIRVSLA 268
N EL RA+R+ LA
Sbjct: 436 NGQELLQRAVRLDLA 450
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEY---------GSAELIEVLYDRDSGKSRGFAFVTMSCV 152
++Y G LP + +A + GS + + +Y K FAFV M V
Sbjct: 59 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKK---FAFVEMRTV 115
Query: 153 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPK-----EPLYP------------------- 188
E+ + + LDG F G +RV P P P
Sbjct: 116 EEASNAMA-LDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGA 174
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
E ++FVG L + T + ++ Q +G + ++ D ETG S+GYGF Y + +
Sbjct: 175 EGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDI 234
Query: 249 ALISLNNVELEGRAIRVSLA 268
A +LN +++ + + V A
Sbjct: 235 ACAALNGLKMGDKTLTVRRA 254
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEY---------GSAELIEVLYDRDSGKSRGFAFVTMSCV 152
++Y G LP + +A + GS + + +Y K FAFV M V
Sbjct: 16 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKK---FAFVEMRTV 72
Query: 153 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPK-----EPLYP------------------- 188
E+ + + LDG F G +RV P P P
Sbjct: 73 EEASNAMA-LDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGA 131
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
E ++FVG L + T + ++ Q +G + ++ D ETG S+GYGF Y + +
Sbjct: 132 EGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDI 191
Query: 249 ALISLNNVELEGRAIRVSLA 268
A +LN +++ + + V A
Sbjct: 192 ACAALNGLKMGDKTLTVRRA 211
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 41/202 (20%)
Query: 102 KLYFGNLPYSVDS-----------AQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMS 150
++Y G LP + + A + G G A ++ V + D + FAFV M
Sbjct: 241 RVYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDA-VVNVYINHD----KKFAFVEMR 295
Query: 151 CVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP----------LYP---- 188
VE+ + + LDG F G ++V +L+ P +P L P
Sbjct: 296 SVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAG 354
Query: 189 --ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSEL 246
E ++FVG L + T + ++ + +G + G ++ D ETG S+GY F Y+ +
Sbjct: 355 GLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVT 414
Query: 247 ETALISLNNVELEGRAIRVSLA 268
+ A +LN +++ + + V A
Sbjct: 415 DIACAALNGIKMGDKTLTVRRA 436
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEY---------GSAELIEVLYDRDSGKSRGFAFVTMSCV 152
++Y G LP + +A + GS + + +Y K FAFV M V
Sbjct: 179 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKK---FAFVEMRTV 235
Query: 153 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPK-----EPLYP------------------- 188
E+ + + LDG F G +RV P P P
Sbjct: 236 EEASNAMA-LDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGA 294
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
E ++FVG L + T + ++ Q +G + ++ D ETG S+GYGF Y + +
Sbjct: 295 EGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDI 354
Query: 249 ALISLNNVELEGRAIRVSLA 268
A +LN +++ + + V A
Sbjct: 355 ACAALNGLKMGDKTLTVRRA 374
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 37/200 (18%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEY---------GSAELIEVLYDRDSGKSRGFAFVTMSCV 152
++Y G LP + +A + GS + + +Y K FAFV M V
Sbjct: 164 RVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVYINHEKK---FAFVEMRTV 220
Query: 153 EDCNTVIENLDGKEFLGRTLRVNLSDKPKPK-----EPLYP------------------- 188
E+ + + LDG F G +RV P P P
Sbjct: 221 EEASNAMA-LDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGA 279
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
E ++FVG L + T + ++ Q +G + ++ D ETG S+GYGF Y + +
Sbjct: 280 EGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDI 339
Query: 249 ALISLNNVELEGRAIRVSLA 268
A +LN +++ + + V A
Sbjct: 340 ACAALNGLKMGDKTLTVRRA 359
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 11/85 (12%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL--- 250
LF+G +S+ +L + F YG V+ A+++ D ETGR RG+GFV ++ E AL
Sbjct: 36 LFLGGISY----NTLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTM 91
Query: 251 ----ISLNNVELEGRAIRVSLAEGK 271
S+ N +L GR +RV+ A K
Sbjct: 92 SLAIKSMKNQDLYGRKVRVNYATEK 116
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 10/166 (6%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ G +P + +L L +E+ + + ++ D+ + SRG FV ++ + +
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 162 LDGKEFL---GRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTV 218
K+ L L+V +D EHKLF+G L ++ + +F +YGT+
Sbjct: 77 CHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNISEVEVSALFSKYGTI 130
Query: 219 VGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNV-ELEGRAI 263
++L + G F+ Y + + AL ++N ++EG ++
Sbjct: 131 KDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSV 176
>Medtr4g104450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr4:43219118-43218715 | 20130731
Length = 104
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 144 FAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSD-----KPKPKEPLYPETEHKLFVGN 198
F VTMS VE+ ++ +G E G L V+ D PK P ++ ++V
Sbjct: 2 FGCVTMSTVEEVEKAMKKFNGYELAGNFLTVSKDDIRNTLPDLPKRPHAFDSPFSVYVTK 61
Query: 199 LSWTV-TSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFV 238
LS ++ +E L Q+F ++G V A ++ D + RSRGYGFV
Sbjct: 62 LSRSIENNEHLEQLFSKHGKVECAELICDKVSSRSRGYGFV 102
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 13/142 (9%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+++Y G +P + L E G + + +D+ ++RGFAFVT +E + I+
Sbjct: 350 SEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIK 409
Query: 161 NLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT-VV 219
L+ EF ++ + S + + +LF+GN+ + + L +V + G V
Sbjct: 410 ELNNTEFKAGKIKCSKS-----------QAKSRLFIGNIPRSWGEKDLKKVVSDIGPGVT 458
Query: 220 GARVLYDGET-GRSRGYGFVCY 240
++ D + +RGY F+ Y
Sbjct: 459 AVELIKDMKNISNNRGYAFIDY 480
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 5/173 (2%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSA-ELIEVLYD-RDSGKSRGFAFVTMSCVEDCNTV 158
++L+ GN+P S L ++ + G +E++ D ++ +RG+AF+ +
Sbjct: 430 SRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYS 489
Query: 159 IENLDGKEF-LGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGT 217
+ + F LG +PK + +++V NL VT E L ++F+ +G
Sbjct: 490 RQKMTSPSFKLGDNFPTVNWAEPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGK 549
Query: 218 VVGARVLYDGETGRSRG-YGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+ VL + G+ + GFV +++RS AL + L+G+ + SLA+
Sbjct: 550 ITKV-VLPPPKPGQEKNRIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAK 601
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W E++ + F+++G ++ A V+ D TGRS+GYGFV + + A
Sbjct: 14 TYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
Query: 250 LISLNNVELEGRAIRVSLA 268
+ + ++GR +LA
Sbjct: 74 CVDAAPI-IDGRRANCNLA 91
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W ++L + F ++G ++ A V+ D TG+S+GYGFV + + +A
Sbjct: 24 TYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSA 80
Query: 250 LISLNNVE--LEGRAIRVSLAEGK 271
+++ N ++GR +LA K
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQK 104
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W ++L + F ++G ++ A V+ D TG+S+GYGFV + + +A
Sbjct: 24 TYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSA 80
Query: 250 LISLNNVE--LEGRAIRVSLAEGK 271
+++ N ++GR +LA K
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQK 104
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 173 RVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRS 232
R N S P P K+FVG L+ TVT F ++GT+ V+YD T R
Sbjct: 19 RSNSSSHGSPAPT--PIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRP 76
Query: 233 RGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
RG+GF+ Y +E L + EL G+ + V A
Sbjct: 77 RGFGFITYDSEEAVEKVLHKTFH-ELNGKMVEVKRA 111
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFV LS+ T + L +F +G + A ++ D T R +G+GFV Y E E A +
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARKA 67
Query: 253 LNNVELEGRAIRVSLAEGKRS 273
LN ++GR I V A+ K S
Sbjct: 68 LNGRIVDGRLIFVEHAKPKDS 88
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 4/169 (2%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
KL+ L + + L L YG E V+ D+ +GKS+G+ FVT V+ +
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPE--TEHKLFVGNLSWTVTSESLIQVFQEYGTVV 219
K GR L+ + K++V N+ + + L+ F YG +
Sbjct: 134 PS-KRIDGRVTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAHFSIYGEIE 192
Query: 220 GARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
+ +D +TGRS+G+ Y K E A +S +EGR + LA
Sbjct: 193 EGPLGFDKQTGRSKGFALFVY-KTPEGANAAVSEPVKNVEGRQLNCKLA 240
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
+ KLF+ L W T+E L +F YG + A V+ D TG+S+GYGFV + ++ A
Sbjct: 71 SRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTF---LHVDGA 127
Query: 250 LISLN--NVELEGRAIRVSLAEGKRS 273
L++L + ++GR LA S
Sbjct: 128 LLALREPSKRIDGRVTVTQLAAAGNS 153
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W E++ + F+++G ++ A V+ D TGRS+GYGFV + + A
Sbjct: 14 TYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRA 73
Query: 250 LISLNNVELEGRAIRVSLA 268
+ + ++GR +LA
Sbjct: 74 CVDAAPI-IDGRRANCNLA 91
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W ++L + F ++G ++ A V+ D TG+S+GYGFV + + +A
Sbjct: 24 TYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSA 80
Query: 250 LISLNNVE--LEGRAIRVSLAEGK 271
+++ N ++GR +LA K
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQK 104
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 190 TEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
T K+FVG L+W ++L + F ++G ++ A V+ D TG+S+GYGFV + + +A
Sbjct: 24 TYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSA 80
Query: 250 LISLNNVE--LEGRAIRVSLAEGK 271
+++ N ++GR +LA K
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQK 104
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 30/179 (16%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
++ GN Y ++L L YG + +++ GFAF+ M D I L
Sbjct: 4 IFCGNFEYDCRESELERLFRRYGKVDRVDMKA--------GFAFIYMEDERDAEAAIRAL 55
Query: 163 DGKEF--LGRTLRV----------NLSDKPKPKEPLYPETEHKLFVGNL-SWTVTSESLI 209
D EF GR LRV +++PK + LFV N ++ + L
Sbjct: 56 DRIEFGRKGRRLRVEWTKQERGVRRPAERPK-RSSANARPSKTLFVINFDTYQTRTRDLE 114
Query: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLA 268
+ F+ YG +V R+ + + FV Y + AL + NN +L R I V A
Sbjct: 115 RHFEPYGKIVSVRIR--------KNFAFVQYESEDDACKALEATNNSKLMDRVISVEFA 165
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLF+ LS+ L F+++G ++ +V+ + TG S+GYGFV ++ + TA
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
Query: 253 LNNVELEGRAIRVSLAE 269
L+ ++GR IRV A
Sbjct: 94 LHGQIVDGRRIRVGYAH 110
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFVG L+W E++ F+++G ++ A V+ D TGRS+GYGFV + + E A+ +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTF---KDPEAAIRA 82
Query: 253 LNNVE--LEGRAIRVSLA 268
N ++GR ++A
Sbjct: 83 CQNPSPVIDGRRANCNIA 100
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KLFVG L+W E++ F+++G ++ A V+ D TGRS+GYGFV + + E A+ +
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTF---KDPEAAIRA 82
Query: 253 LNNVE--LEGRAIRVSLA 268
N ++GR ++A
Sbjct: 83 CQNPSPVIDGRRANCNIA 100
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LFV LS+ T + + F+ YG + R++ D E+ + RGY F+ Y +++ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 254 NNVELEGRAIRVSLAEGK 271
+ ++EGR + V + G+
Sbjct: 197 DGRKIEGRRVLVDVERGR 214
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LFV LS+ T + + F+ YG + R++ D E+ + RGY F+ Y +++ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 254 NNVELEGRAIRVSLAEGK 271
+ ++EGR + V + G+
Sbjct: 197 DGRKIEGRRVLVDVERGR 214
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LFV LS+ T + + F+ YG + R++ D E+ + RGY F+ Y +++ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 254 NNVELEGRAIRVSLAEGK 271
+ ++EGR + V + G+
Sbjct: 197 DGRKIEGRRVLVDVERGR 214
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
LFV LS+ T + + F+ YG + R++ D E+ + RGY F+ Y +++ A
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 254 NNVELEGRAIRVSLAEGK 271
+ ++EGR + V + G+
Sbjct: 197 DGRKIEGRRVLVDVERGR 214
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ L + + L +YG E + + D+ SGKS+G+AF+ C ++
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPE------TEHKLFVGNLSWTVTSESLIQVFQEY 215
K RT L+ P T+ K+FV N+S + + L++ F+++
Sbjct: 226 PQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQF 284
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAI 263
G V + D TG+ +G+ Y + AL N V EG +
Sbjct: 285 GEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV-FEGHTL 331
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ L + + L +YG E + + D+ SGKS+G+AF+ C ++
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPE------TEHKLFVGNLSWTVTSESLIQVFQEY 215
K RT L+ P T+ K+FV N+S + + L++ F+++
Sbjct: 226 PQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQF 284
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAI 263
G V + D TG+ +G+ Y + AL N V EG +
Sbjct: 285 GEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV-FEGHTL 331
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 8/168 (4%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
K++ L + + L +YG E + + D+ SGKS+G+AF+ C ++
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 162 LDGKEFLGRTLRVNLSDKPKPKEPLYPE------TEHKLFVGNLSWTVTSESLIQVFQEY 215
K RT L+ P T+ K+FV N+S + + L++ F+++
Sbjct: 226 PQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQF 284
Query: 216 GTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAI 263
G V + D TG+ +G+ Y + AL N V EG +
Sbjct: 285 GEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPNKV-FEGHTL 331
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
E LFV LS T+E+L + FQ++G VV ARV+ D +G S+G+GFV Y+ +
Sbjct: 48 EPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAK 107
Query: 249 ALISLNNVELEGRAIRVSLAEGK 271
+ ++ LEG I A +
Sbjct: 108 GIEGMDGKFLEGWVIFAEYARPR 130
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FVG L+W ++ + F+++G ++ A ++ D TG+S+GYGFV + A
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 253 LNNVELEGRAIRVSLA 268
N V ++GR ++A
Sbjct: 77 PNPV-IDGRRANCNIA 91
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 194 LFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISL 253
L V N+++ T++ L +F +YG VV + D TG SRG+ FV Y E A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 254 NNVELEGRAIRVSLAE 269
+ ++GR I V A+
Sbjct: 78 DGRMVDGREITVQFAK 93
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
K+FVG L+W ++L + F++YG ++ A ++ D TGRS+GYGFV + + A
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKA 75
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETA 249
K+FVG L+W ++L + F++YG ++ A ++ D TGRS+GYGFV + + A
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKA 75
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
+L+V LS+ T ESL F+ +G +V ++ D R RG+ F+ Y+ E + A+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 253 LNNVELEGRAIRVSLAEGK 271
++ L+GR I V +A+ +
Sbjct: 156 MHGKFLDGRVIFVEVAKPR 174
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 191 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
EH++FVG L T E L ++FQ G V+ R+ + T ++RGY V ++ + + AL
Sbjct: 417 EHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKAL 476
Query: 251 ISLNNVELEGRAIRVSLAE 269
+ N + G+ S +E
Sbjct: 477 SEMKNPVIRGKRCGTSPSE 495
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 191 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
EH++FVG L T E L ++FQ G V+ R+ + T ++RGY V ++ + + AL
Sbjct: 417 EHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKAL 476
Query: 251 ISLNNVELEGRAIRVSLAE 269
+ N + G+ S +E
Sbjct: 477 SEMKNPVIRGKRCGTSPSE 495
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 191 EHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETAL 250
EH++FVG L T E L ++FQ G V+ R+ + T ++RGY V ++ + + AL
Sbjct: 417 EHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKAL 476
Query: 251 ISLNNVELEGRAIRVSLAE 269
+ N + G+ S +E
Sbjct: 477 SEMKNPVIRGKRCGTSPSE 495
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
+L+ NLPYS +L ++GS + ++ D+D+ +S+G AF+ S E +E
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEE 959
Query: 162 LDGKEFLGRTLRV 174
D F GR L V
Sbjct: 960 SDNSIFQGRLLHV 972
>Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:30368066-30365046 | 20130731
Length = 149
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 TKLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIE 160
+K+ NLPY L +G ++++ D + +S+G AF+ +C +D +E
Sbjct: 39 SKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAMLALE 98
Query: 161 NLDGKEFLGRTLRVNL 176
+D + F GRT+ V L
Sbjct: 99 TMDQQSFYGRTISVEL 114
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 141 SRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP------- 185
+ FAFV M VE+ + + LDG F G ++V +L+ P +P
Sbjct: 336 DKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 394
Query: 186 ---LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 236
L P + ++FVG + + T + ++ + +G + G ++ D ETG S+GY
Sbjct: 395 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 454
Query: 237 FVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F Y + + A +LN +++ + + V A
Sbjct: 455 FCVYQDLAVTDIACAALNGIKMGDKTLTVRRA 486
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
K+FV L+++ T E L + F +YG VV A ++ + R +G+G+V +++ E A I
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 253 LN 254
+N
Sbjct: 93 MN 94
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 141 SRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP------- 185
+ FAFV M VE+ + + LDG F G ++V +L+ P +P
Sbjct: 334 DKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 392
Query: 186 ---LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 236
L P + ++FVG + + T + ++ + +G + G ++ D ETG S+GY
Sbjct: 393 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 452
Query: 237 FVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F Y + + A +LN +++ + + V A
Sbjct: 453 FCVYQDLAVTDIACAALNGIKMGDKTLTVRRA 484
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 144 FAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP---------- 185
FAFV M VE+ + + LDG F G ++V +L+ P +P
Sbjct: 339 FAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVG 397
Query: 186 LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVC 239
L P + ++FVG + + T + ++ + +G + G ++ D ETG S+GY F
Sbjct: 398 LSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCV 457
Query: 240 YSKRSELETALISLNNVELEGRAIRVSLA 268
Y + + A +LN +++ + + V A
Sbjct: 458 YQDLAVTDIACAALNGIKMGDKTLTVRRA 486
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 144 FAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP---------- 185
FAFV M VE+ + + LDG F G ++V +L+ P +P
Sbjct: 337 FAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVG 395
Query: 186 LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVC 239
L P + ++FVG + + T + ++ + +G + G ++ D ETG S+GY F
Sbjct: 396 LSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCV 455
Query: 240 YSKRSELETALISLNNVELEGRAIRVSLA 268
Y + + A +LN +++ + + V A
Sbjct: 456 YQDLAVTDIACAALNGIKMGDKTLTVRRA 484
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 141 SRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP------- 185
+ FAFV M VE+ + + LDG F G ++V +L+ P +P
Sbjct: 336 DKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 394
Query: 186 ---LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 236
L P + ++FVG + + T + ++ + +G + G ++ D ETG S+GY
Sbjct: 395 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 454
Query: 237 FVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F Y + + A +LN +++ + + V A
Sbjct: 455 FCVYQDLAVTDIACAALNGIKMGDKTLTVRRA 486
>Medtr3g065490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:29610838-29605718 | 20130731
Length = 291
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 189 ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELET 248
E + KL+V NL VT+E + ++F E G + V YD + G G V Y++RS+
Sbjct: 106 EADTKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYD-KNGHPTGSAEVVYNRRSDAFA 164
Query: 249 ALISLNNVELEGRAIRVSL 267
AL NNV L+G+ +++ +
Sbjct: 165 ALKRYNNVLLDGKPMKIEI 183
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 141 SRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP------- 185
+ FAFV M VE+ + + LDG F G ++V +L+ P +P
Sbjct: 336 DKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 394
Query: 186 ---LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 236
L P + ++FVG + + T + ++ + +G + G ++ D ETG S+GY
Sbjct: 395 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 454
Query: 237 FVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F Y + + A +LN +++ + + V A
Sbjct: 455 FCVYQDLAVTDIACAALNGIKMGDKTLTVRRA 486
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 141 SRGFAFVTMSCVEDCNTVIENLDGKEFLGRTLRV--------NLSDKPKPKEP------- 185
+ FAFV M VE+ + + LDG F G ++V +L+ P +P
Sbjct: 334 DKKFAFVEMRSVEEASNAMA-LDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 392
Query: 186 ---LYP------ETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYG 236
L P + ++FVG + + T + ++ + +G + G ++ D ETG S+GY
Sbjct: 393 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 452
Query: 237 FVCYSKRSELETALISLNNVELEGRAIRVSLA 268
F Y + + A +LN +++ + + V A
Sbjct: 453 FCVYQDLAVTDIACAALNGIKMGDKTLTVRRA 484
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 3/109 (2%)
Query: 163 DGKEFLGRTLR--VNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVG 220
+ K++ GR L +N+ + + + +T+ KLFV LS+ + ++L F+ +G +V
Sbjct: 162 ENKDYEGRNLENSLNMPNSSEASQEASVKTK-KLFVTGLSFYTSEKTLRAAFEGFGELVE 220
Query: 221 ARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSLAE 269
+V+ D + RS+GY F+ Y+ AL +N + G I V +A+
Sbjct: 221 VKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 269
>Medtr7g024090.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:7894145-7897152 | 20130731
Length = 315
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 193 KLFVGNLSWTVTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALIS 252
KL++ NL V++E + +F E G + + YD + GRS+G V ++++SE AL
Sbjct: 76 KLYLSNLDDRVSNEDIHLLFSEEGELESYSIHYD-QFGRSKGTAEVVFTRQSEALAALKR 134
Query: 253 LNNVELEGRAIRVSL 267
NN++L+G+ +++ L
Sbjct: 135 YNNMKLDGKTLQIEL 149
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY NL V + L L +YG+ + + S +R +AFV ++D L
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSVT------SYSARNYAFVFFKRIDDAKAAKNAL 82
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
G F G +LR+ + K T +L+VG +S VT E L F+++G V
Sbjct: 83 QGFNFRGNSLRIEFARPAK--------TCKQLWVGGISPAVTKEDLEADFRKFGKV---- 130
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
D + R R V + + A+ +N + G IRV
Sbjct: 131 --EDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDF 173
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 103 LYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIENL 162
LY NL V + L L +YG+ + + S +R +AFV ++D L
Sbjct: 29 LYVANLSPDVTDSDLMDLFVQYGALDSVT------SYSARNYAFVFFKRIDDAKAAKNAL 82
Query: 163 DGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWTVTSESLIQVFQEYGTVVGAR 222
G F G +LR+ + K T +L+VG +S VT E L F+++G V
Sbjct: 83 QGFNFRGNSLRIEFARPAK--------TCKQLWVGGISPAVTKEDLEADFRKFGKV---- 130
Query: 223 VLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRVSL 267
D + R R V + + A+ +N + G IRV
Sbjct: 131 --EDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDF 173