Miyakogusa Predicted Gene

Lj6g3v0060010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0060010.1 Non Characterized Hit- tr|D7KDF5|D7KDF5_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,38.5,1e-17,seg,NULL,CUFF.57459.1
         (259 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g073350.1 | CCT motif protein | HC | chr1:32553600-3255596...   190   1e-48

>Medtr1g073350.1 | CCT motif protein | HC | chr1:32553600-32555963 |
           20130731
          Length = 414

 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 129/202 (63%), Gaps = 9/202 (4%)

Query: 7   LQDEISSPLSARIFELCNSELFPEALQNSEVTXXXXXXXXXXXXXATNTSLAIDVETKFX 66
           LQDEISSPLSARIFELCN+ELFPEALQNSEVT             ATN    +DVE KF 
Sbjct: 11  LQDEISSPLSARIFELCNTELFPEALQNSEVTSSSNCCYEENSSYATNI---LDVENKFN 67

Query: 67  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVIFDSQEDIDNDISASIDFTLSPAFNVG 126
                                         LSVIFDSQE+IDNDISASIDF+LSP+FNV 
Sbjct: 68  NSNSNNTVVTTPTSTNNNINNNNSNNSNN-LSVIFDSQEEIDNDISASIDFSLSPSFNVP 126

Query: 127 PFAP---SQQEQHFDFSSVQQNQVQLTASSVVEGFSHSQYPPDPVAPLMGA--SLPPVFE 181
            F P   SQQ + FDFSSVQ + VQLTA S V+GFS    P D VAPLMGA  SLP VFE
Sbjct: 127 SFLPVTSSQQVEQFDFSSVQPHHVQLTACSSVDGFSQYHNPNDSVAPLMGAPLSLPSVFE 186

Query: 182 EDCITAVPSYMPLIPSSPTLLY 203
           EDCIT+VPSY+PL PSSP+  Y
Sbjct: 187 EDCITSVPSYVPLNPSSPSCNY 208