Miyakogusa Predicted Gene

Lj6g3v0057850.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0057850.1 Non Characterized Hit- tr|C6T3Z3|C6T3Z3_SOYBN
Putative uncharacterized protein (Fragment) OS=Glycine,30.64,2e-18,no
description,NULL; P34-Arc,Arp2/3 complex, 34kDa subunit p34-Arc;
coiled-coil,NULL; ARP2/3 COMPLEX,CUFF.57449.1
         (363 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g045065.1 | actin-related protein 2/3 complex, protein | H...   524   e-149
Medtr1g045065.3 | actin-related protein 2/3 complex, protein | H...   524   e-149
Medtr1g045065.2 | actin-related protein 2/3 complex, protein | H...   404   e-113
Medtr8g070640.1 | Arp2/3 complex 34 kDa subunit | HC | chr8:2989...   222   5e-58

>Medtr1g045065.1 | actin-related protein 2/3 complex, protein | HC |
           chr1:16984748-16979651 | 20130731
          Length = 312

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/311 (81%), Positives = 277/311 (89%), Gaps = 4/311 (1%)

Query: 52  MACIDRASPALNQILLKLYRAEKPMEIDHHLHEFGSVEYHIQSEASNPLVAYLSISIPPL 111
           MACI+R+SPAL QILLKLYRAEK +EIDHHL+EFGSVEYHIQS+A+NPLVAYLSIS PPL
Sbjct: 1   MACIERSSPALKQILLKLYRAEKSIEIDHHLYEFGSVEYHIQSQATNPLVAYLSISTPPL 60

Query: 112 CQGVLTNELSPNTIEMVKELCPRVMEIAEPARERYQLTLKLDLNQIPQSKDYVKVIKEIS 171
             G L N LSP TIEMVK +CP ++EI EPARE YQLTLKL+L+QIP++KDYVKVI++IS
Sbjct: 61  YHGNLPNNLSPYTIEMVKGICPNLVEIEEPAREGYQLTLKLNLDQIPRNKDYVKVIEDIS 120

Query: 172 TVQSAILSSQMKEILRNVNTDDAVQGMYKPLKLVYHPREPFFVIRQPQRIVAVFPIRLRE 231
           TVQS I+SSQ+KEIL NVN+DDA QGMYKP+KLVYHPREPFFVIRQ QRI+A+FPIR +E
Sbjct: 121 TVQSVIISSQLKEILCNVNSDDASQGMYKPIKLVYHPREPFFVIRQQQRIIAIFPIRFKE 180

Query: 232 KSDVVIATAFFQELVDVGNSDKWAKAPPCTWSAIPPPELRGEAFEDLSTNGGFFSFDISS 291
           K DVVIATAFFQELVDVGNSDKW K PPCTWSAIPPPEL GEA EDLSTNGGF SFDISS
Sbjct: 181 KFDVVIATAFFQELVDVGNSDKWVKTPPCTWSAIPPPELTGEALEDLSTNGGFVSFDISS 240

Query: 292 RHVEGNRLDKTVWNLLNFNAYVRYHVKSTKGFIQRRMRKRLENLVEVLHHTISEEKKQT- 350
           RH+EGNRLDKTVWNLLNFNA VRYHVKSTKGFIQRRMRKRLENLVEVLH T SEE +QT 
Sbjct: 241 RHIEGNRLDKTVWNLLNFNANVRYHVKSTKGFIQRRMRKRLENLVEVLHQTNSEEIEQTK 300

Query: 351 ---QQHQGCRY 358
              QQHQG  +
Sbjct: 301 QVKQQHQGFAF 311


>Medtr1g045065.3 | actin-related protein 2/3 complex, protein | HC |
           chr1:16984772-16979719 | 20130731
          Length = 312

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/311 (81%), Positives = 277/311 (89%), Gaps = 4/311 (1%)

Query: 52  MACIDRASPALNQILLKLYRAEKPMEIDHHLHEFGSVEYHIQSEASNPLVAYLSISIPPL 111
           MACI+R+SPAL QILLKLYRAEK +EIDHHL+EFGSVEYHIQS+A+NPLVAYLSIS PPL
Sbjct: 1   MACIERSSPALKQILLKLYRAEKSIEIDHHLYEFGSVEYHIQSQATNPLVAYLSISTPPL 60

Query: 112 CQGVLTNELSPNTIEMVKELCPRVMEIAEPARERYQLTLKLDLNQIPQSKDYVKVIKEIS 171
             G L N LSP TIEMVK +CP ++EI EPARE YQLTLKL+L+QIP++KDYVKVI++IS
Sbjct: 61  YHGNLPNNLSPYTIEMVKGICPNLVEIEEPAREGYQLTLKLNLDQIPRNKDYVKVIEDIS 120

Query: 172 TVQSAILSSQMKEILRNVNTDDAVQGMYKPLKLVYHPREPFFVIRQPQRIVAVFPIRLRE 231
           TVQS I+SSQ+KEIL NVN+DDA QGMYKP+KLVYHPREPFFVIRQ QRI+A+FPIR +E
Sbjct: 121 TVQSVIISSQLKEILCNVNSDDASQGMYKPIKLVYHPREPFFVIRQQQRIIAIFPIRFKE 180

Query: 232 KSDVVIATAFFQELVDVGNSDKWAKAPPCTWSAIPPPELRGEAFEDLSTNGGFFSFDISS 291
           K DVVIATAFFQELVDVGNSDKW K PPCTWSAIPPPEL GEA EDLSTNGGF SFDISS
Sbjct: 181 KFDVVIATAFFQELVDVGNSDKWVKTPPCTWSAIPPPELTGEALEDLSTNGGFVSFDISS 240

Query: 292 RHVEGNRLDKTVWNLLNFNAYVRYHVKSTKGFIQRRMRKRLENLVEVLHHTISEEKKQT- 350
           RH+EGNRLDKTVWNLLNFNA VRYHVKSTKGFIQRRMRKRLENLVEVLH T SEE +QT 
Sbjct: 241 RHIEGNRLDKTVWNLLNFNANVRYHVKSTKGFIQRRMRKRLENLVEVLHQTNSEEIEQTK 300

Query: 351 ---QQHQGCRY 358
              QQHQG  +
Sbjct: 301 QVKQQHQGFAF 311


>Medtr1g045065.2 | actin-related protein 2/3 complex, protein | HC |
           chr1:16984772-16980971 | 20130731
          Length = 258

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 191/238 (80%), Positives = 213/238 (89%)

Query: 52  MACIDRASPALNQILLKLYRAEKPMEIDHHLHEFGSVEYHIQSEASNPLVAYLSISIPPL 111
           MACI+R+SPAL QILLKLYRAEK +EIDHHL+EFGSVEYHIQS+A+NPLVAYLSIS PPL
Sbjct: 1   MACIERSSPALKQILLKLYRAEKSIEIDHHLYEFGSVEYHIQSQATNPLVAYLSISTPPL 60

Query: 112 CQGVLTNELSPNTIEMVKELCPRVMEIAEPARERYQLTLKLDLNQIPQSKDYVKVIKEIS 171
             G L N LSP TIEMVK +CP ++EI EPARE YQLTLKL+L+QIP++KDYVKVI++IS
Sbjct: 61  YHGNLPNNLSPYTIEMVKGICPNLVEIEEPAREGYQLTLKLNLDQIPRNKDYVKVIEDIS 120

Query: 172 TVQSAILSSQMKEILRNVNTDDAVQGMYKPLKLVYHPREPFFVIRQPQRIVAVFPIRLRE 231
           TVQS I+SSQ+KEIL NVN+DDA QGMYKP+KLVYHPREPFFVIRQ QRI+A+FPIR +E
Sbjct: 121 TVQSVIISSQLKEILCNVNSDDASQGMYKPIKLVYHPREPFFVIRQQQRIIAIFPIRFKE 180

Query: 232 KSDVVIATAFFQELVDVGNSDKWAKAPPCTWSAIPPPELRGEAFEDLSTNGGFFSFDI 289
           K DVVIATAFFQELVDVGNSDKW K PPCTWSAIPPPEL GEA EDLSTNGGF SF I
Sbjct: 181 KFDVVIATAFFQELVDVGNSDKWVKTPPCTWSAIPPPELTGEALEDLSTNGGFVSFGI 238


>Medtr8g070640.1 | Arp2/3 complex 34 kDa subunit | HC |
           chr8:29891539-29883331 | 20130731
          Length = 324

 Score =  222 bits (565), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/280 (37%), Positives = 177/280 (63%), Gaps = 2/280 (0%)

Query: 62  LNQILLKLYRAEKPMEIDHHLHEFGSVEYHIQSEASNPLVAYLSISIP-PLCQGVLTNEL 120
           L  +L +L   EK +E+DHH  EF  V YHIQ    NP +  LS+S+P P  + +    L
Sbjct: 12  LQTLLNRLQNIEKGVELDHHWVEFDDVRYHIQVSMKNPNIFLLSVSLPTPSSETIFVCGL 71

Query: 121 SPNTIEMVKELCPRVMEIAEPARERYQLTLKLDLNQIPQSKDYVK-VIKEISTVQSAILS 179
               IE +K     +++I +P R+ + LTLK++L+++P +++  + ++ ++++V+  +L 
Sbjct: 72  PFGAIEAIKAAYGSLVQILDPPRDGFNLTLKINLSKVPANQEQRQALLVKVASVREVVLG 131

Query: 180 SQMKEILRNVNTDDAVQGMYKPLKLVYHPREPFFVIRQPQRIVAVFPIRLREKSDVVIAT 239
           + ++ IL+++ + +    M   + LV+ P+E FFV  Q  ++  ++P+R  +  D+V+AT
Sbjct: 132 APLRVILKHLASRNVAPDMDPLVALVHRPKESFFVFPQADKVTVMYPMRFNDSIDIVLAT 191

Query: 240 AFFQELVDVGNSDKWAKAPPCTWSAIPPPELRGEAFEDLSTNGGFFSFDISSRHVEGNRL 299
           +F QE V+   +      PPC+WS  PPPEL+G + + LS N GF SF I  RHVEG +L
Sbjct: 192 SFLQEFVEARRTAGLNNTPPCSWSHTPPPELKGVSTDALSANAGFVSFVIFPRHVEGPKL 251

Query: 300 DKTVWNLLNFNAYVRYHVKSTKGFIQRRMRKRLENLVEVL 339
           D+TVW+L  F+AYV YHVK ++GF+  RMR+R+E+L++ L
Sbjct: 252 DRTVWSLSTFHAYVSYHVKCSEGFMHTRMRRRVESLIQAL 291