Miyakogusa Predicted Gene

Lj6g3v0057770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0057770.1 tr|B9HKT6|B9HKT6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_564980 PE=4
SV=1,66.18,6e-19,seg,NULL,CUFF.57442.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g045370.1 | hypothetical protein | HC | chr1:17007105-1701...   110   4e-25
Medtr1g073660.2 | hypothetical protein | HC | chr1:32681667-3268...    89   8e-19
Medtr1g073660.1 | hypothetical protein | HC | chr1:32681670-3268...    85   2e-17

>Medtr1g045370.1 | hypothetical protein | HC |
           chr1:17007105-17010859 | 20130731
          Length = 101

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 68/100 (68%), Gaps = 5/100 (5%)

Query: 9   SKDANNYMDNKPVMGSSLGGEKVDDHDHDHVNGEDDSDSNSLLPPRRGGMSRNSDKTRLK 68
           SKD  NY+ + PV+   +  EKV+DH    VNGEDDSDSNSLLPPRRG MSRNS KTR K
Sbjct: 6   SKDGKNYIMDTPVVVCVMEDEKVEDH----VNGEDDSDSNSLLPPRRGCMSRNSGKTRRK 61

Query: 69  VQWNDRNGNKLVEVLEYEP-XXXXXXXXXXXXXXCICTIM 107
           VQWND+NGN+L EVLEYEP               CICTIM
Sbjct: 62  VQWNDKNGNQLAEVLEYEPSDVSDSEDEDEDSDSCICTIM 101


>Medtr1g073660.2 | hypothetical protein | HC |
           chr1:32681667-32683626 | 20130731
          Length = 103

 Score = 89.0 bits (219), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 66/105 (62%), Gaps = 8/105 (7%)

Query: 6   DTDSK-DANNYMDNKPVMGSSLGGEKVDDHDHDHVNGEDDSDSNSLLP--PRRGGMSRNS 62
           DT +K D  N   NKPV  +SL  +KV+DH H  VNG+ DSDSNSLL   P+RGGM+R  
Sbjct: 4   DTVTKMDTANGSVNKPVDVASLDCKKVEDHGH--VNGKSDSDSNSLLTTLPKRGGMARKL 61

Query: 63  DKTRLKVQWNDRNGNKLVEVLEYEPXXXXXXXXXXXXXXCICTIM 107
           DKT  +VQW D  GNKLVEVLEYEP              CIC+IM
Sbjct: 62  DKTCRRVQWTDTIGNKLVEVLEYEP---SDVSDSDDEDSCICSIM 103


>Medtr1g073660.1 | hypothetical protein | HC |
          chr1:32681670-32681930 | 20130731
          Length = 86

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 56/79 (70%), Gaps = 4/79 (5%)

Query: 11 DANNYMDNKPVMGSSLGGEKVDDHDHDHVNGEDDSDSNSLLP--PRRGGMSRNSDKTRLK 68
          D  N   NKPV  +SL  +KV+DH H  VNG+ DSDSNSLL   P+RGGM+R  DKT  +
Sbjct: 9  DTANGSVNKPVDVASLDCKKVEDHGH--VNGKSDSDSNSLLTTLPKRGGMARKLDKTCRR 66

Query: 69 VQWNDRNGNKLVEVLEYEP 87
          VQW D  GNKLVEVLEYEP
Sbjct: 67 VQWTDTIGNKLVEVLEYEP 85