Miyakogusa Predicted Gene

Lj6g3v0024590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0024590.1 CUFF.57382.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g041745.1 | plastid developmental protein DAG | HC | chr1:...   131   1e-31
Medtr1g075460.1 | plastid developmental protein DAG | HC | chr1:...   130   3e-31
Medtr1g075460.2 | plastid developmental protein DAG | HC | chr1:...   130   3e-31
Medtr1g041745.2 | plastid developmental protein DAG | HC | chr1:...   100   4e-22
Medtr4g120340.1 | plastid developmental protein DAG | HC | chr4:...    86   9e-18
Medtr2g006210.1 | plastid developmental protein DAG, putative | ...    86   1e-17
Medtr2g011000.1 | plastid developmental protein DAG | HC | chr2:...    81   2e-16
Medtr2g078090.1 | plastid developmental protein DAG | HC | chr2:...    71   2e-13
Medtr6g043040.1 | plastid developmental protein DAG | LC | chr6:...    71   3e-13
Medtr1g009840.1 | plastid developmental protein DAG | HC | chr1:...    65   1e-11
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    47   5e-06

>Medtr1g041745.1 | plastid developmental protein DAG | HC |
           chr1:15695728-15692169 | 20130731
          Length = 217

 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 76/97 (78%), Gaps = 1/97 (1%)

Query: 12  CCLSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDP 71
           C +  +  ++ SEEEAKK+IY++SCE+Y GFGCEIDEETS+KL+G  G++FVLPDSYVDP
Sbjct: 105 CYVQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDP 164

Query: 72  EYKDYGGELFVNGAIVQRPPERQKRFGQKQTTRKTSR 108
           E KDYG ELFVNG IVQR PERQKR  + Q  R   R
Sbjct: 165 ENKDYGAELFVNGEIVQRSPERQKRV-EPQPQRHQDR 200


>Medtr1g075460.1 | plastid developmental protein DAG | HC |
           chr1:33421296-33424686 | 20130731
          Length = 235

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 1/97 (1%)

Query: 12  CCLSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDP 71
           C +  +  ++ SEEEAKK+IY++SCE+Y GFGCE+DEETS+KL+G  G++FVLPDSYVDP
Sbjct: 123 CYVKTLAQVLGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGIPGVLFVLPDSYVDP 182

Query: 72  EYKDYGGELFVNGAIVQRPPERQKRFGQKQTTRKTSR 108
           E++DYG ELFVNG IVQR PERQ+R  + Q  R  SR
Sbjct: 183 EHQDYGAELFVNGEIVQRSPERQRRV-EPQAQRGDSR 218


>Medtr1g075460.2 | plastid developmental protein DAG | HC |
           chr1:33421296-33424686 | 20130731
          Length = 235

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 1/97 (1%)

Query: 12  CCLSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDP 71
           C +  +  ++ SEEEAKK+IY++SCE+Y GFGCE+DEETS+KL+G  G++FVLPDSYVDP
Sbjct: 123 CYVKTLAQVLGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGIPGVLFVLPDSYVDP 182

Query: 72  EYKDYGGELFVNGAIVQRPPERQKRFGQKQTTRKTSR 108
           E++DYG ELFVNG IVQR PERQ+R  + Q  R  SR
Sbjct: 183 EHQDYGAELFVNGEIVQRSPERQRRV-EPQAQRGDSR 218


>Medtr1g041745.2 | plastid developmental protein DAG | HC |
           chr1:15695728-15692740 | 20130731
          Length = 178

 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 58/71 (81%)

Query: 12  CCLSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDP 71
           C +  +  ++ SEEEAKK+IY++SCE+Y GFGCEIDEETS+KL+G  G++FVLPDSYVDP
Sbjct: 105 CYVQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDP 164

Query: 72  EYKDYGGELFV 82
           E KDYG  L V
Sbjct: 165 ENKDYGESLDV 175


>Medtr4g120340.1 | plastid developmental protein DAG | HC |
           chr4:49892396-49894453 | 20130731
          Length = 263

 Score = 85.5 bits (210), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 3/81 (3%)

Query: 23  SEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGELFV 82
           SEEEAKK+IYS+S   Y+GFG  + EE S K+    G+++VLPDSY+D   KDYGG+LFV
Sbjct: 123 SEEEAKKKIYSVSTSTYIGFGALVSEELSYKIKELPGVLWVLPDSYLDVPNKDYGGDLFV 182

Query: 83  NGAIVQRPPERQKRFGQKQTT 103
           +G ++ RP   Q R+ ++  +
Sbjct: 183 DGKVIPRP---QYRYAERAPS 200


>Medtr2g006210.1 | plastid developmental protein DAG, putative | HC
           | chr2:499629-496731 | 20130731
          Length = 489

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/90 (46%), Positives = 56/90 (62%), Gaps = 2/90 (2%)

Query: 20  LVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGE 79
           L  S EEAKK+IY+ S   Y GF   + EE S K +G  G++FVLPDSY+DP  K YGG+
Sbjct: 156 LNISVEEAKKKIYACSTTTYTGFQAVMTEEESKKFEGIPGVIFVLPDSYIDPVNKQYGGD 215

Query: 80  LFVNGAIVQRPPERQKRFGQKQTTRKTSRK 109
            ++ G I+ RPP  Q  FG+    R+  R+
Sbjct: 216 QYIEGQIIPRPPPVQ--FGRNLGGRRDYRQ 243


>Medtr2g011000.1 | plastid developmental protein DAG | HC |
           chr2:2614958-2612197 | 20130731
          Length = 221

 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 2/98 (2%)

Query: 14  LSHIFFLVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEY 73
           L  +  ++ S EEAKK +Y+ S   Y GF C +DE TS+K  G  G+++VLPDSY+D + 
Sbjct: 100 LQTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKN 159

Query: 74  KDYGGELFVNGAIV--QRPPERQKRFGQKQTTRKTSRK 109
            DYGG+ ++NG I+  + P  + KR G K   ++  R+
Sbjct: 160 MDYGGDKYINGEIIPCKYPTYQPKRSGSKNDGKRYERR 197


>Medtr2g078090.1 | plastid developmental protein DAG | HC |
           chr2:32418788-32422274 | 20130731
          Length = 375

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 47/78 (60%)

Query: 20  LVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGE 79
           ++ SEEEA+K IYS+S   Y  FG    EE S KL     + +VLPDSY++   KDYGGE
Sbjct: 125 VIGSEEEARKSIYSVSTRHYFAFGALCSEELSYKLKELPKVRWVLPDSYLNVREKDYGGE 184

Query: 80  LFVNGAIVQRPPERQKRF 97
            F+NG  V   P+  + +
Sbjct: 185 PFINGQAVPYDPKYHEEW 202


>Medtr6g043040.1 | plastid developmental protein DAG | LC |
           chr6:14846758-14845642 | 20130731
          Length = 173

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 1/72 (1%)

Query: 12  CCLSHIFFLVFSEEEAKKRIYSISC-EKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVD 70
           C +  +  ++ S  EAKK+IYS+ C +K  GFGCEIDE+T + L    G+MF+LPD Y+D
Sbjct: 98  CYIQTLGHVLGSVVEAKKKIYSVYCFKKEFGFGCEIDEQTKNNLGVMPGVMFILPDVYMD 157

Query: 71  PEYKDYGGELFV 82
            + K YGGE FV
Sbjct: 158 IQKKYYGGEDFV 169


>Medtr1g009840.1 | plastid developmental protein DAG | HC |
           chr1:1542198-1544398 | 20130731
          Length = 327

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query: 20  LVFSEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGE 79
           ++ +EE A+K IYS+S   Y  FG    EE S KL+    + +VLPDSY++ + KDYGGE
Sbjct: 117 VIGNEELARKNIYSVSTRHYFAFGAVCSEELSYKLNELPKVRWVLPDSYLNVKEKDYGGE 176

Query: 80  LFVNGAIVQRPPE 92
            F+NG  V   P+
Sbjct: 177 PFINGQAVPYDPK 189


>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
           putative | HC | chr1:41816599-41813158 | 20130731
          Length = 284

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 23  SEEEAKKRIYSISCEKYLGFGCEIDEETSDKLDGKAGIMFVLPDSYVDPEYKDYGGELFV 82
           +E++A+  IY +S +   GF CE+DE+ + +L G  G++ V PD   + E KDY G    
Sbjct: 113 NEKDAQMCIYHVSWKTNFGFCCELDEDCAHELSGVPGVLSVQPDDNFESENKDYEGRNLE 172

Query: 83  NG 84
           N 
Sbjct: 173 NS 174