Miyakogusa Predicted Gene

Lj6g3v0003490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0003490.1 CUFF.57397.1
         (746 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g041685.1 | transducin/WD40 domain-like protein, putative ...   837   0.0  

>Medtr1g041685.1 | transducin/WD40 domain-like protein, putative |
           HC | chr1:15632434-15637206 | 20130731
          Length = 813

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/801 (58%), Positives = 549/801 (68%), Gaps = 74/801 (9%)

Query: 1   MSTRRGG-----GGDAALRSTTRSVTPLSTSTEKDXXXXXXXXXXXXXXXXH-------- 47
           MSTRR G     G      +TTRS+TPL+TS +                           
Sbjct: 1   MSTRRSGAAVIDGATTKPTTTTRSITPLTTSRKLPSLNTSSSSSLKENNNPRRSTSRGPI 60

Query: 48  NPTHKPVTKPVXXXXXXXXXXXXXXXXXXXXXXXXXXQTRRVSVDRAAKDPTHLKRRGDP 107
           +PT KP+T+ +                          QTRRVSVDR  KD   +    +P
Sbjct: 61  HPTQKPLTRSIPRTDRRSSSSFSSLPRGRSPSPSDLNQTRRVSVDR--KDSKSII---NP 115

Query: 108 IGKSAEKPSRNEKLKTCSKESEEK--------------------DKYPSRLHEKLAFLEG 147
           I KS E+P   EK++T S  +  +                    +KY S+LHEKLAFLEG
Sbjct: 116 IRKSTERPKSAEKVRTLSNSARVRVRVEENSNSNSNGNSDGSSSNKYQSKLHEKLAFLEG 175

Query: 148 KVKRIASDIKKTKEMLDMNNPDASKVILSDIQDKISGIEKAMVRVVSTENENDNGDNGST 207
           KVKRIASDIKKTKEMLD+NNPD SK ILSDIQDKISGIEKAMVRVV +E+  DN   G  
Sbjct: 176 KVKRIASDIKKTKEMLDLNNPDESKFILSDIQDKISGIEKAMVRVVVSED--DNHKVGVV 233

Query: 208 SKQLXXXXXXXXXXXXXEIETEKGKSLVKGLNNEELEARLFPHQKLLRDRTVNKDC---- 263
           S                +I+      LVKGLN++ELE RLFPH KL+RDR + KD     
Sbjct: 234 S--------VNGVEDSKQIKPMNASGLVKGLNSDELEDRLFPHHKLIRDRIMIKDSTVKE 285

Query: 264 -VKVEDEVLSLVDDNPIAVEFLASLEKGNGKVDACGGGPSDG---NKASALNNQKYDIXX 319
            V++E+ VL  VD+N IA+EFLA+L +G+GKV +  G P DG    K+ + +NQK DI  
Sbjct: 286 KVEIEENVLKSVDENSIALEFLATLGEGSGKV-SNHGDPCDGIERGKSGSCSNQKCDIDM 344

Query: 320 XXXXXXXXXXXXXQENKQGM-------FVEEEIDENFNFKLNEIGNKTAAAGWFVSEGEA 372
                        Q  +          F+ +E DE FNFKLN IGNK AAAGWFVSEGEA
Sbjct: 345 VLEADEKLEEFDDQGKENNNNTQEEEGFIADETDEAFNFKLNGIGNKIAAAGWFVSEGEA 404

Query: 373 VLLAHDDASCSYYDIANCEEKAVYMPPPGVSSNVWRDCWVIRAPGSDGCSGRFVVAASAG 432
           VLLAHDDA+CSYYDIAN EEK+VY+PPPG S ++WRDCW+IRA GSDGCSGR+VVAASAG
Sbjct: 405 VLLAHDDATCSYYDIANSEEKSVYIPPPGASPSIWRDCWLIRAQGSDGCSGRYVVAASAG 464

Query: 433 NTMDSGFCSWDFYTKEIRAFQAESGTTSSRTALRPLPNNLVQRRNSAASCIMPAE-RQWW 491
           NT++SGFCSWDFYTKE++AFQ ++GT SSRTALRPLPNN+  RRNS +S ++ A+ RQWW
Sbjct: 465 NTIESGFCSWDFYTKEVKAFQFDNGTASSRTALRPLPNNI--RRNSTSSTLLSADARQWW 522

Query: 492 YKPCGPLIISTSSSQRSIKVFDVRDGEQIMKWDVQKPVLAMEYSSPLQWRNRGKVVVAEA 551
           YKPCGPLIIST SSQR +KVFDVRDGEQ+M W+VQKPV+AMEYSSPLQWRNRGKVVVAEA
Sbjct: 523 YKPCGPLIISTCSSQRGMKVFDVRDGEQVMSWEVQKPVVAMEYSSPLQWRNRGKVVVAEA 582

Query: 552 ESISLWDVNSLSPQALLSVPSGGRKISALHVSNTDAELGGGVRKRVSSSAAEGNDGVFCT 611
           ESI+LWDVNSLSPQAL+SVP GG+KISALHVSNTDAELGGGVRKRVSSS AEGNDGVFCT
Sbjct: 583 ESITLWDVNSLSPQALVSVPFGGKKISALHVSNTDAELGGGVRKRVSSSEAEGNDGVFCT 642

Query: 612 SDSINVLDFRQPSGVGLRISKL-GVNVQSVFSSGDSVFLGCTXXXXXXXXXXXXPQVQQF 670
           +DSIN+LDFRQPSGVGL+I K  GVNVQS+FS GDSVF GCT              +QQF
Sbjct: 643 TDSINILDFRQPSGVGLKIPKHGGVNVQSIFSRGDSVFFGCTASTTMGKRQSSS-LIQQF 701

Query: 671 SLRRQALFSTYALPESSVHSHYAAISQVWGNSDFVMAVNGLGLHVFDAQKDDPL-RVL-- 727
           SLR+Q LF+TY  PES+ HSHYAA+SQVWGNSDFVM V GLGL+VFDA KDD   RVL  
Sbjct: 702 SLRKQELFNTYTFPESNAHSHYAAVSQVWGNSDFVMGVCGLGLYVFDAMKDDDASRVLNM 761

Query: 728 --NLNMDSSSNAQSLREVVGP 746
             + N ++++N Q+LREVVGP
Sbjct: 762 NYDNNNNNNNNGQNLREVVGP 782