Miyakogusa Predicted Gene

Lj6g3v0003450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0003450.1 Non Characterized Hit- tr|I3T5Q5|I3T5Q5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.74,0,Ribosomal_L14e,Ribosomal protein L14; no
description,Translation protein SH3-like, subgroup;
SUBFAMI,CUFF.57373.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g120770.1 | 60S ribosomal L14-like protein | HC | chr4:500...   234   2e-62
Medtr1g075720.1 | 60S ribosomal L14-like protein | HC | chr1:335...   229   5e-61

>Medtr4g120770.1 | 60S ribosomal L14-like protein | HC |
           chr4:50003492-50006693 | 20130731
          Length = 133

 Score =  234 bits (596), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/133 (87%), Positives = 124/133 (93%)

Query: 1   MPFKRFVEIGRVALVNYGKEYGRLVVIVDIIDQNRALVDAPDMVRSQMNLKRLSLTDIKV 60
           MPFKRFVEIGRVAL+NYG EYGR+VVIVD+IDQ RALVDAPDM RS +N KRLSLTDIK+
Sbjct: 1   MPFKRFVEIGRVALINYGPEYGRIVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDIKI 60

Query: 61  DIKRVPKKKDLIQAMEAADVKNKWENSSWGRKLIVKKRRAALNDFDRFKIMLTKIKRATA 120
           DIKRVPKKKDLI+AMEAADVKNKWE SSWGRKLIVKKRRAALNDFDRFKIML KIKRA  
Sbjct: 61  DIKRVPKKKDLIKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRFKIMLAKIKRAGV 120

Query: 121 VRQELAKLKKSAA 133
           VRQELAKL+K+AA
Sbjct: 121 VRQELAKLRKTAA 133


>Medtr1g075720.1 | 60S ribosomal L14-like protein | HC |
           chr1:33547954-33549648 | 20130731
          Length = 133

 Score =  229 bits (584), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 114/133 (85%), Positives = 123/133 (92%)

Query: 1   MPFKRFVEIGRVALVNYGKEYGRLVVIVDIIDQNRALVDAPDMVRSQMNLKRLSLTDIKV 60
           MPFKRFVEIGRVALVNYG +YG+LVVIVD+IDQ RALVDAPDM R  +N KRLSLTDIK+
Sbjct: 1   MPFKRFVEIGRVALVNYGPDYGKLVVIVDVIDQTRALVDAPDMERVPINFKRLSLTDIKI 60

Query: 61  DIKRVPKKKDLIQAMEAADVKNKWENSSWGRKLIVKKRRAALNDFDRFKIMLTKIKRATA 120
           DIKRVPKKKDL++AMEAADVKNKWE SSWGRKLIVKKRRAALNDFDRFKIML KIKRA  
Sbjct: 61  DIKRVPKKKDLVKAMEAADVKNKWEKSSWGRKLIVKKRRAALNDFDRFKIMLAKIKRAGV 120

Query: 121 VRQELAKLKKSAA 133
           VRQELAKL+K+AA
Sbjct: 121 VRQELAKLRKTAA 133