Miyakogusa Predicted Gene

Lj6g3v0000210.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj6g3v0000210.1 Non Characterized Hit- tr|F6HDW7|F6HDW7_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,59.76,6e-17,
,gene.g63662.t1.1
         (85 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g076400.1 | E3 ubiquitin ligase PUB14, putative | HC | chr...   140   2e-34
Medtr1g076400.2 | E3 ubiquitin ligase PUB14, putative | HC | chr...   140   2e-34

>Medtr1g076400.1 | E3 ubiquitin ligase PUB14, putative | HC |
            chr1:34032730-34037383 | 20130731
          Length = 1013

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/85 (87%), Positives = 81/85 (95%)

Query: 1    MRPLLDILNWGSDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLVGLTGMNIYGDGHLRR 60
            MRPLL+IL WGS+SLKAEALGLLEKVFVSKEMVEYYGTTARSRL+ LTG NIYGDGHLRR
Sbjct: 929  MRPLLEILTWGSESLKAEALGLLEKVFVSKEMVEYYGTTARSRLICLTGSNIYGDGHLRR 988

Query: 61   KAAKVLSLLERYSRTSSSAVSGVME 85
            K AKVLSLLERYS++SSSA+SGV+E
Sbjct: 989  KVAKVLSLLERYSKSSSSAISGVLE 1013


>Medtr1g076400.2 | E3 ubiquitin ligase PUB14, putative | HC |
            chr1:34032751-34037233 | 20130731
          Length = 1013

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/85 (87%), Positives = 81/85 (95%)

Query: 1    MRPLLDILNWGSDSLKAEALGLLEKVFVSKEMVEYYGTTARSRLVGLTGMNIYGDGHLRR 60
            MRPLL+IL WGS+SLKAEALGLLEKVFVSKEMVEYYGTTARSRL+ LTG NIYGDGHLRR
Sbjct: 929  MRPLLEILTWGSESLKAEALGLLEKVFVSKEMVEYYGTTARSRLICLTGSNIYGDGHLRR 988

Query: 61   KAAKVLSLLERYSRTSSSAVSGVME 85
            K AKVLSLLERYS++SSSA+SGV+E
Sbjct: 989  KVAKVLSLLERYSKSSSSAISGVLE 1013