Miyakogusa Predicted Gene

Lj5g3v2300340.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2300340.2 Non Characterized Hit- tr|C0P2S7|C0P2S7_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,48.72,7e-17,seg,NULL;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,Nse4; Nse4,Nse4,CUFF.57318.2
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116900.2 | Nse4, component of Smc5/6 DNA repair complex p...   282   2e-76
Medtr1g116900.1 | Nse4, component of Smc5/6 DNA repair complex p...   282   2e-76
Medtr0042s0070.1 | Nse4, component of Smc5/6 DNA repair complex ...   188   3e-48
Medtr7g093090.1 | Nse4, component of Smc5/6 DNA repair complex p...   171   4e-43

>Medtr1g116900.2 | Nse4, component of Smc5/6 DNA repair complex
           protein | HC | chr1:52801866-52798334 | 20130731
          Length = 384

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 168/202 (83%), Gaps = 7/202 (3%)

Query: 30  TSCRRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEAL 89
           +S RR+IRS+F KLK+LINE++DDL+N DS+KF++IL +F KLHEQVKKPREQVADAEAL
Sbjct: 41  SSIRRIIRSEFFKLKSLINEEKDDLMNGDSEKFDSILHEFDKLHEQVKKPREQVADAEAL 100

Query: 90  LDFTRTLVGSVKSLVNEGITPSHFVSSLLKYYHQP-----SFNWQKLGLAVSPFFPTVVN 144
           LD TRTLVGSVKSLVNEG+TPS FVSSLLK+Y  P     S +W KLG++VSP F T V+
Sbjct: 101 LDLTRTLVGSVKSLVNEGVTPSQFVSSLLKHYAHPPNNAASIDWHKLGISVSPIFLT-VH 159

Query: 145 GSSTMLGPMENQLKQRKVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMATMFNVL 204
           GSSTMLGPMENQLKQRK     KRN   TTTARPQQL + T G+EKTDTDKNM+TMFN+L
Sbjct: 160 GSSTMLGPMENQLKQRKTIVSRKRNPRSTTTARPQQLQD-TEGEEKTDTDKNMSTMFNIL 218

Query: 205 RKMKLVPLENLILNRTSFAQTV 226
           R+ K V LE+LILNR SFAQTV
Sbjct: 219 RENKKVQLEHLILNRFSFAQTV 240


>Medtr1g116900.1 | Nse4, component of Smc5/6 DNA repair complex
           protein | HC | chr1:52801926-52798628 | 20130731
          Length = 384

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 145/202 (71%), Positives = 168/202 (83%), Gaps = 7/202 (3%)

Query: 30  TSCRRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEAL 89
           +S RR+IRS+F KLK+LINE++DDL+N DS+KF++IL +F KLHEQVKKPREQVADAEAL
Sbjct: 41  SSIRRIIRSEFFKLKSLINEEKDDLMNGDSEKFDSILHEFDKLHEQVKKPREQVADAEAL 100

Query: 90  LDFTRTLVGSVKSLVNEGITPSHFVSSLLKYYHQP-----SFNWQKLGLAVSPFFPTVVN 144
           LD TRTLVGSVKSLVNEG+TPS FVSSLLK+Y  P     S +W KLG++VSP F T V+
Sbjct: 101 LDLTRTLVGSVKSLVNEGVTPSQFVSSLLKHYAHPPNNAASIDWHKLGISVSPIFLT-VH 159

Query: 145 GSSTMLGPMENQLKQRKVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMATMFNVL 204
           GSSTMLGPMENQLKQRK     KRN   TTTARPQQL + T G+EKTDTDKNM+TMFN+L
Sbjct: 160 GSSTMLGPMENQLKQRKTIVSRKRNPRSTTTARPQQLQD-TEGEEKTDTDKNMSTMFNIL 218

Query: 205 RKMKLVPLENLILNRTSFAQTV 226
           R+ K V LE+LILNR SFAQTV
Sbjct: 219 RENKKVQLEHLILNRFSFAQTV 240


>Medtr0042s0070.1 | Nse4, component of Smc5/6 DNA repair complex
           protein | HC | scaffold0042:32235-31629 | 20130731
          Length = 174

 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 113/135 (83%), Gaps = 4/135 (2%)

Query: 30  TSCRRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEAL 89
           ++ RR+IRS+F KLK+LINEK+DDL+NT SDKF++IL  F KL EQVKKP+EQ+ DAEAL
Sbjct: 37  SNIRRIIRSEFFKLKSLINEKKDDLMNTASDKFDSILHDFDKLDEQVKKPQEQIVDAEAL 96

Query: 90  LDFTRTLVGSVKSLVNEGITPSHFVSSLLKYYHQP---SFNWQKLGLAVSPFFPTVVNGS 146
           LD TRTLVGSV S+VNEG+TPS FVSSLLK+Y  P   S +WQKLG+ VSP F T V+GS
Sbjct: 97  LDLTRTLVGSVNSMVNEGVTPSQFVSSLLKHYAHPPNTSIDWQKLGIFVSPIFLT-VHGS 155

Query: 147 STMLGPMENQLKQRK 161
           STML PME+QLK+RK
Sbjct: 156 STMLDPMESQLKRRK 170


>Medtr7g093090.1 | Nse4, component of Smc5/6 DNA repair complex
           protein | HC | chr7:36968665-36972152 | 20130731
          Length = 328

 Score =  171 bits (434), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 95/208 (45%), Positives = 138/208 (66%), Gaps = 18/208 (8%)

Query: 33  RRVIRSQFLKLKTLI-NEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEALLD 91
           RRV+RS++L ++ LI  ++++++  TDS  F +I  +  KLH+ V  PREQVADA+ALLD
Sbjct: 46  RRVLRSRYLAVQNLIRGDEKENIAKTDSKTFGSIFSKIEKLHKSVTTPREQVADAQALLD 105

Query: 92  FTRTLVGSVKSLVNEGITPSHFVSSLLKYYHQP-------------SFNWQKLGLAVSPF 138
            T++L  SVK+  + G+TPS FV+ +L+ + Q              S  WQ +G+AVS  
Sbjct: 106 ITKSLALSVKAHSSGGLTPSTFVTHILEKFGQGGGTSTSREDCSRNSIAWQDIGIAVSSI 165

Query: 139 FPTVVNGSSTMLGPMENQLKQRKVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMA 198
           F     G STM+GPME+++K ++V  R  R+  PT  ARP ++ E++  + + DTDKNM 
Sbjct: 166 FGAGY-GCSTMIGPMESKIKPKRVYRR--RSVKPTQLARPAEVVESS-KNGRNDTDKNML 221

Query: 199 TMFNVLRKMKLVPLENLILNRTSFAQTV 226
           TMFN+L+K + V LENL+LNRTSFAQTV
Sbjct: 222 TMFNILKKNRSVNLENLVLNRTSFAQTV 249