Miyakogusa Predicted Gene

Lj5g3v2300300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2300300.1 Non Characterized Hit- tr|H9MCK1|H9MCK1_PINLA
Uncharacterized protein (Fragment) OS=Pinus
lambertian,71.21,2e-17,zinc finger,Zinc finger, CCCH-type; K homology
RNA-binding domain,K Homology domain; Eukaryotic type,CUFF.57316.1
         (299 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116940.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...   366   e-101
Medtr7g093130.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...   312   2e-85
Medtr1g053960.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...   298   3e-81
Medtr1g053960.2 | zinc finger C-x8-C-x5-C-x3-H type family prote...   217   1e-56
Medtr7g093130.2 | zinc finger C-x8-C-x5-C-x3-H type family prote...   204   6e-53
Medtr4g113940.1 | zinc finger CCCH domain protein | LC | chr4:46...    55   8e-08
Medtr4g113970.1 | zinc finger CCCH domain protein | HC | chr4:46...    51   1e-06

>Medtr1g116940.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr1:52813237-52812415 | 20130731
          Length = 258

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/257 (68%), Positives = 197/257 (76%), Gaps = 1/257 (0%)

Query: 43  FSTSGCPFGDGCHFLHYVPGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXXXXXXXXK 102
           + TSGCPFG+GCHFLHYVPGGFKA+ QMINVGSSP IP +GRN                K
Sbjct: 3   YITSGCPFGEGCHFLHYVPGGFKAVYQMINVGSSPAIPPIGRNPNVPQSFPDGSSPPVAK 62

Query: 103 TRMCNKYNSSEGCKFGDRCHFAHGEWELGRPTLPPYEDPRGFGQMQSNXXXXXXXXXXXX 162
           TR+CNK+N++EGCKFGD+CHFAHGEWELGRPT+P YED R  GQMQS+            
Sbjct: 63  TRLCNKFNTAEGCKFGDKCHFAHGEWELGRPTVPAYEDTRAMGQMQSSSVGGRIEPPPPA 122

Query: 163 XXXXXXXXXXXXXXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIE 222
                          +SINA+LAGAIIGKN VNSKQIC +TGAKLSIREHDSDPNL+NIE
Sbjct: 123 HGAAAGFGVSATAT-VSINATLAGAIIGKNDVNSKQICHITGAKLSIREHDSDPNLRNIE 181

Query: 223 LEGSFDQINQASAMVHELILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENFAKGSCTFG 282
           LEGSFDQI QASAMVH+LIL+VSSVSGPP KN +SQ SAP +N KTKLCENF KGSCTFG
Sbjct: 182 LEGSFDQIKQASAMVHDLILNVSSVSGPPGKNITSQTSAPANNFKTKLCENFTKGSCTFG 241

Query: 283 ERCHFAHGTDELRRPGM 299
           ERCHFAHGTDELR+PGM
Sbjct: 242 ERCHFAHGTDELRKPGM 258


>Medtr7g093130.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr7:36981685-36985930 | 20130731
          Length = 301

 Score =  312 bits (800), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/305 (55%), Positives = 203/305 (66%), Gaps = 13/305 (4%)

Query: 1   MD-RKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHY 59
           MD RKRGRPE  FN NGG KKS+ EMES +TG+GSKSKPCTKFFSTSGCPFG+ CHFLH+
Sbjct: 1   MDMRKRGRPEHGFNNNGGFKKSRHEMESLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHH 60

Query: 60  VPGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXX--XXXXXXKTRMCNKYNSSEGCKF 117
           VPGG+ A+SQM+N+  +P  P   RN                  K+R+C+K+N++EGCKF
Sbjct: 61  VPGGYNAVSQMMNL--TPAAPPAPRNVPAPRNAHAPNGSAPSAVKSRICSKFNTAEGCKF 118

Query: 118 GDRCHFAHGEWELGRPTLPPYEDPRGFGQMQSNXXXXXX-XXXXXXXXXXXXXXXXXXXX 176
           GD+CHFAHGEWELG+P  P ++D R                                   
Sbjct: 119 GDKCHFAHGEWELGKPVAPSFDDHRHNDHRHMGPPNAGRFGGHRMEPPPVPASFGANATA 178

Query: 177 KISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAM 236
           KIS+ ASLAGAIIGK GVNSKQICR TGAKL+IREH+ DPNLKNIEL G+F+QI  AS M
Sbjct: 179 KISVEASLAGAIIGKGGVNSKQICRQTGAKLAIREHE-DPNLKNIELVGTFEQIKDASNM 237

Query: 237 VHELILSVSSVSGPPAKN-----FSSQHSAPGSNLKTKLCENFAKGSCTFGERCHFAHGT 291
           V +L+L++  +S PP  N             G+NLKTKLCENFAKGSCTFG+RCHFAHG 
Sbjct: 238 VKDLLLTL-QMSAPPKSNQGPPGHHGAPGHHGNNLKTKLCENFAKGSCTFGDRCHFAHGA 296

Query: 292 DELRR 296
            ELR+
Sbjct: 297 VELRK 301


>Medtr1g053960.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr1:22947319-22950793 | 20130731
          Length = 293

 Score =  298 bits (764), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 164/305 (53%), Positives = 200/305 (65%), Gaps = 18/305 (5%)

Query: 1   MD-RKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHY 59
           MD RKRGR + A NG+   KK+K EM+S  TG+GSK+KPCTKFFS +GCPFG+GCHF H+
Sbjct: 1   MDARKRGRVDAALNGS--VKKTKQEMDS--TGVGSKTKPCTKFFSIAGCPFGEGCHFSHH 56

Query: 60  VPGGFKAISQMINVGSSPTIPQMGRNXXXXX-XXXXXXXXXXXKTRMCNKYNSSEGCKFG 118
           VPGG+ A++QM+N+   P  P   RN                 K+R+CNK+NS EGCKFG
Sbjct: 57  VPGGYNAVAQMMNL--KPAAPP--RNVAAPPPVSNNGSAQHAVKSRICNKFNSLEGCKFG 112

Query: 119 DRCHFAHGEWELGRPTLPPYEDPRGFGQMQSNXXXXXXXXXXXXXXXXXXXXXXXXXXKI 178
           D+CHFAHGEWELG+P  P  +D R    M                             KI
Sbjct: 113 DKCHFAHGEWELGKPFAPSVDDHR---LMAPTNVGRMPGRVEAPSGLGGTSFGANSTAKI 169

Query: 179 SINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVH 238
           S+ ASLAGAIIGK GV+SKQICR TG K SIR+H++DPNL+NIELEG+FDQI QAS MV 
Sbjct: 170 SVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHETDPNLRNIELEGTFDQIAQASNMVK 229

Query: 239 ELILSVSSVSGPPAKNFSSQHSAPGS----NLKTKLCENFAKGSCTFGERCHFAHGTDEL 294
           +L+L++ SVS PP     +      +    N+KTKLCENFAKGSCTFGERCHFAHG  EL
Sbjct: 230 DLLLTL-SVSAPPKSTPGAPAGGGPAAPGRNIKTKLCENFAKGSCTFGERCHFAHGAAEL 288

Query: 295 RRPGM 299
           R+ G+
Sbjct: 289 RKLGV 293


>Medtr1g053960.2 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr1:22950110-22950793 | 20130731
          Length = 227

 Score =  217 bits (553), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 135/202 (66%), Gaps = 8/202 (3%)

Query: 102 KTRMCNKYNSSEGCKFGDRCHFAHGEWELGRPTLPPYEDPRGFGQMQSNXXXXXXXXXXX 161
           K+R+CNK+NS EGCKFGD+CHFAHGEWELG+P  P  +D R    M              
Sbjct: 30  KSRICNKFNSLEGCKFGDKCHFAHGEWELGKPFAPSVDDHR---LMAPTNVGRMPGRVEA 86

Query: 162 XXXXXXXXXXXXXXXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNI 221
                          KIS+ ASLAGAIIGK GV+SKQICR TG K SIR+H++DPNL+NI
Sbjct: 87  PSGLGGTSFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHETDPNLRNI 146

Query: 222 ELEGSFDQINQASAMVHELILSVSSVSGPPAKNFSSQHSAPGS----NLKTKLCENFAKG 277
           ELEG+FDQI QAS MV +L+L++ SVS PP     +      +    N+KTKLCENFAKG
Sbjct: 147 ELEGTFDQIAQASNMVKDLLLTL-SVSAPPKSTPGAPAGGGPAAPGRNIKTKLCENFAKG 205

Query: 278 SCTFGERCHFAHGTDELRRPGM 299
           SCTFGERCHFAHG  ELR+ G+
Sbjct: 206 SCTFGERCHFAHGAAELRKLGV 227


>Medtr7g093130.2 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr7:36981723-36985923 | 20130731
          Length = 231

 Score =  204 bits (520), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 110/201 (54%), Positives = 133/201 (66%), Gaps = 8/201 (3%)

Query: 102 KTRMCNKYNSSEGCKFGDRCHFAHGEWELGRPTLPPYEDPRGFGQMQSNXXXXXXXXXXX 161
           K+R+C+K+N++EGCKFGD+CHFAHGEWELG+P  P ++D R                   
Sbjct: 33  KSRICSKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRHNDHRHMGPPNAGRFGGHR 92

Query: 162 XXXXXXXXX-XXXXXXKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKN 220
                           KIS+ ASLAGAIIGK GVNSKQICR TGAKL+IREH+ DPNLKN
Sbjct: 93  MEPPPVPASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLAIREHE-DPNLKN 151

Query: 221 IELEGSFDQINQASAMVHELILSVSSVSGPPAKN-----FSSQHSAPGSNLKTKLCENFA 275
           IEL G+F+QI  AS MV +L+L++  +S PP  N             G+NLKTKLCENFA
Sbjct: 152 IELVGTFEQIKDASNMVKDLLLTLQ-MSAPPKSNQGPPGHHGAPGHHGNNLKTKLCENFA 210

Query: 276 KGSCTFGERCHFAHGTDELRR 296
           KGSCTFG+RCHFAHG  ELR+
Sbjct: 211 KGSCTFGDRCHFAHGAVELRK 231


>Medtr4g113940.1 | zinc finger CCCH domain protein | LC |
           chr4:46890061-46892284 | 20130731
          Length = 270

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 37  KPCTKFFSTSGCPFGDGCHFLHYVPGGFKAISQMINVGSSPTIPQMGRNXXXXXXXXXXX 96
           K C  + +   CP+GD C FLH  P  F+  S  +   S+ TI     N           
Sbjct: 119 KLCKNYCNGEECPYGDNCIFLHEDPAQFRDDSLKLRECSAITIET--NNLEGSRALNKQA 176

Query: 97  XXXXXKTRMCNKYNSSEGCKFGDRCHFAHGEWELGRP 133
                KT++C  +  +  C FG  C FAHGE EL  P
Sbjct: 177 RSTYRKTKLCRNWKHTGYCSFGMNCLFAHGEEELQVP 213


>Medtr4g113970.1 | zinc finger CCCH domain protein | HC |
           chr4:46898290-46899312 | 20130731
          Length = 255

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 35  KSKPCTKFFSTSGCPFGDGCHFLHYVPGGFKAISQMI---------NVGSSPTIPQMGRN 85
           K K C K++    CP+GD C FLH  P  F+  S            N+GS  +      N
Sbjct: 146 KMKLCKKYYIGEECPYGDKCSFLHEDPARFRDASWKTRECSAISVGNIGSPKSFGYGSNN 205

Query: 86  XXXXXXXXXXXXXXXXKTRMCNKYNSSEGCKFGDRCHFAHGE 127
                           KT++C ++  +  C FG+ C FAHGE
Sbjct: 206 LEGIRAVNKPARSAYWKTKLC-QWQHTGSCPFGETCDFAHGE 246