Miyakogusa Predicted Gene

Lj5g3v2298200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2298200.1 Non Characterized Hit- tr|A5AQQ0|A5AQQ0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,37.13,2e-18,SUBFAMILY NOT NAMED,NULL; GEMIN2,Survival motor neuron
interacting protein 1; SIP1,NULL; coiled-coil,CUFF.57312.1
         (510 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116530.1 | survival motor neuron interacting protein | HC...   461   e-130
Medtr6g086905.1 | spliceosome-like protein, putative | HC | chr6...    70   5e-12

>Medtr1g116530.1 | survival motor neuron interacting protein | HC |
           chr1:52721123-52724180 | 20130731
          Length = 521

 Score =  461 bits (1186), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 276/468 (58%), Positives = 305/468 (65%), Gaps = 61/468 (13%)

Query: 76  SLGL-GIEVIDETALLETIPRKITTAASKNARRRAXXXXXXXXXXXXQIRHHKKTVTAEE 134
           SLG   IEVIDETALL+ IP         N + R                  KK      
Sbjct: 80  SLGFSNIEVIDETALLDCIP-------INNGKPRRNPS--------------KKINKNNT 118

Query: 135 IPVLRNSEAKGGKYSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEYDTLAV------ 188
           +   R +     KYSR+ M ++RFVNV+ Q +FWKTIY  L+S  A EYDTL V      
Sbjct: 119 VAPPRTTGTDKKKYSREMMESMRFVNVSQQLKFWKTIYTALQSAFADEYDTLVVAATAHN 178

Query: 189 NVHHLPCLPNKKPIL-GAESCEN-------------VSPVDPSCSH--MDEDGHSV--LX 230
           N H LP  PNKKPIL GA  C N             VS VDPS +H  M + G SV    
Sbjct: 179 NRHSLPFHPNKKPILTGAVYCGNMDNERQFRESGGSVSHVDPSYTHSIMSKHGCSVSEEC 238

Query: 231 XXXXXXXXXXXYTSIQRPAFYVDGEPNFESGPPEDGWEYLRRVRWEAGQIPKVKVAKLDR 290
                      Y SIQRPAF VDGEPNF+SGPPEDGWEYLRRVRWEA QIPKVKV+KLDR
Sbjct: 239 FEDDDDDSEDDYASIQRPAFQVDGEPNFDSGPPEDGWEYLRRVRWEAHQIPKVKVSKLDR 298

Query: 291 CKLNKEQSAYMPKIPDVAKCPEHLLPSKQWEDVFLAEFSSLRANLSCLEGSSVMDSSSLQ 350
            KLNKEQS YMP+IPD+AKCPEHLLP KQWED+FLAEFS LR NL  LEG S   S +LQ
Sbjct: 299 SKLNKEQSPYMPQIPDIAKCPEHLLPLKQWEDIFLAEFSVLRENLYSLEGLSATQSGNLQ 358

Query: 351 PVHSSQLVGNNCGESASVMNRDVL----HSIDKAMDQLTINLTGEVKDTTQPLKTGS-KT 405
            + SS+L GNN G    VMNRDVL     SI KA DQ + NLT + +D+T P +    K 
Sbjct: 359 SLISSKLPGNNFG----VMNRDVLLHNNASIGKA-DQPS-NLTAKDEDSTMPPENPVLKR 412

Query: 406 SIDQTTP----PLLSVVLGMDSVARVSMLLKRISLLESANTITRNDCMWLFALCATVDAP 461
           SIDQT+     PL+S +LGMDSVARVSMLLKRI LLE  NTITR DCMWLFALCA VDAP
Sbjct: 413 SIDQTSSSCSTPLVSAILGMDSVARVSMLLKRIRLLEPENTITRIDCMWLFALCAAVDAP 472

Query: 462 LHADTSAALRSLLRKCASIRAGKAGLDEEAVMLNILATISGRYFGQSE 509
           L ADT AALRSLLRKCASIRAGKA LD+E VMLNILATISGRYFGQSE
Sbjct: 473 LDADTCAALRSLLRKCASIRAGKAELDDEVVMLNILATISGRYFGQSE 520


>Medtr6g086905.1 | spliceosome-like protein, putative | HC |
           chr6:32822628-32823143 | 20130731
          Length = 171

 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 61/122 (50%), Gaps = 27/122 (22%)

Query: 77  LGLGI---EVIDETALLETIPRKITTAASKNARRRAXXXXXXXXXXXXQIRHHKKTV--- 130
           LG GI   E+IDET LL++ P        K + RRA              + HK T+   
Sbjct: 59  LGFGIPKIEIIDETILLDSFP-----VNRKQSNRRASK------------KIHKNTLPLT 101

Query: 131 TAEEIPVLRNSE----AKGGKYSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEYDTL 186
             EE+    NS+     K  KYSR+ M A RFVNV  Q +FW  IYA L+S  A +YDTL
Sbjct: 102 VTEELVAAENSDESERGKKKKYSREVMEATRFVNVPEQCKFWNRIYAALQSSFADDYDTL 161

Query: 187 AV 188
            V
Sbjct: 162 VV 163