Miyakogusa Predicted Gene

Lj5g3v2292560.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2292560.2 tr|G7IF34|G7IF34_MEDTR High mobility group
protein B3 OS=Medicago truncatula GN=MTR_1g116180 PE=4
SV,57.89,0.0000000003, ,CUFF.57224.2
         (57 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116180.2 | transcription factor | HC | chr1:52519467-5251...    70   6e-13
Medtr1g116180.1 | transcription factor | HC | chr1:52519486-5251...    69   8e-13
Medtr7g005970.1 | high mobility group B-like protein | LC | chr7...    57   4e-09

>Medtr1g116180.2 | transcription factor | HC |
          chr1:52519467-52514170 | 20130731
          Length = 333

 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query: 1  MASTSCISTSPLPMNEGAPSYIAYPPPLTEYKNVVDDATLFLSTLEKLHADLGTRLM 57
          MASTSC S SPLPM E A S+  YPPP+  Y+ VVD+  LF+  LEKLH  +GT+ M
Sbjct: 1  MASTSCFSKSPLPMKETALSHGEYPPPMATYEEVVDNPKLFILCLEKLHTLMGTKFM 57


>Medtr1g116180.1 | transcription factor | HC |
          chr1:52519486-52514092 | 20130731
          Length = 415

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 40/57 (70%)

Query: 1  MASTSCISTSPLPMNEGAPSYIAYPPPLTEYKNVVDDATLFLSTLEKLHADLGTRLM 57
          MASTSC S SPLPM E A S+  YPPP+  Y+ VVD+  LF+  LEKLH  +GT+ M
Sbjct: 1  MASTSCFSKSPLPMKETALSHGEYPPPMATYEEVVDNPKLFILCLEKLHTLMGTKFM 57


>Medtr7g005970.1 | high mobility group B-like protein | LC |
          chr7:435478-439265 | 20130731
          Length = 437

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 1  MASTSCI-STSPLPMNEGAPSYIAYPPPLTEYKNVVDDATLFLSTLEKLHADLGTRLM 57
          MASTSC  + +  PM   AP   +YP PL +Y +VV +  LF+ TLEKLHA +GT+ M
Sbjct: 1  MASTSCFFNNNEFPMKVVAPMSHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFM 58