Miyakogusa Predicted Gene

Lj5g3v2292540.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2292540.1 tr|D7KE87|D7KE87_ARALL High mobility group family
protein OS=Arabidopsis lyrata subsp. lyrata
GN=ARA,62.32,6e-17,HIGHMOBLTY12,NULL; HMG-box,High mobility group,
superfamily; HMG_box,High mobility group, superfamil,CUFF.57220.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116180.1 | transcription factor | HC | chr1:52519486-5251...   114   2e-26
Medtr7g005970.1 | high mobility group B-like protein | LC | chr7...   102   1e-22

>Medtr1g116180.1 | transcription factor | HC |
           chr1:52519486-52514092 | 20130731
          Length = 415

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 73/108 (67%), Gaps = 8/108 (7%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDYHEKLKMDLVISDAVPLRQRFPE 60
           +SRTIG+LWNKL ESEK VYQ+KA+KDKERY  EME Y EKLK D VISDAVPLRQR PE
Sbjct: 293 ISRTIGELWNKLPESEKAVYQDKAVKDKERYITEMEYYREKLKNDEVISDAVPLRQRLPE 352

Query: 61  PXXXXXXXXXXXXXXXXXXXQTVEESSF-GESDYEVDKAGERDFNVDS 107
           P                   QT E+SS  G  DYE DKA E+DF+VDS
Sbjct: 353 P-------DTDMLNAEADSLQTPEQSSLDGSDDYEDDKAKEKDFSVDS 393


>Medtr7g005970.1 | high mobility group B-like protein | LC |
           chr7:435478-439265 | 20130731
          Length = 437

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 68/107 (63%), Gaps = 9/107 (8%)

Query: 1   MSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDYHEKLKMDLVISDAVPLRQRFPE 60
           +SR IG+LWN L+ESEKTVYQEKA+KDKERY AEMEDY +K+K  +V  +A PL+QRFPE
Sbjct: 285 ISRMIGELWNNLKESEKTVYQEKAIKDKERYQAEMEDYRDKMKTSIVTDNAGPLQQRFPE 344

Query: 61  PXXXXXXXXXXXXXXXXXXXQTVEESSFGESDYEVDKAGERDFNVDS 107
                               QT EESS GESDY  D     D N+D+
Sbjct: 345 ----GDSALVDVDIKMHDSCQTPEESSSGESDYVAD-----DINMDA 382