Miyakogusa Predicted Gene

Lj5g3v2290070.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2290070.3 Non Characterized Hit- tr|I1LFF7|I1LFF7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.11683
PE,86.96,0,Clp1,Pre-mRNA cleavage complex II Clp1;
CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P,NULL,CUFF.60765.3
         (439 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g116060.1 | Pre-mRNA cleavage complex II protein Clp1 | HC...   753   0.0  
Medtr8g080150.1 | polynucleotide 5-hydroxyl-kinase NOL9-like pro...    57   3e-08

>Medtr1g116060.1 | Pre-mRNA cleavage complex II protein Clp1 | HC |
           chr1:52452926-52448755 | 20130731
          Length = 438

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/418 (87%), Positives = 394/418 (94%), Gaps = 2/418 (0%)

Query: 22  TIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYG 81
           TIKQVKLE+E ELRIEV +D+PLRLRLLNG AEIFGTELPPEIWLNFPPRLKFAVFTWYG
Sbjct: 18  TIKQVKLEKECELRIEV-SDSPLRLRLLNGNAEIFGTELPPEIWLNFPPRLKFAVFTWYG 76

Query: 82  ATIEMDGSTETDYTADETPMVSYVNVHAVLEGRRSRAKASPSDDPESSQGPRVIVVGPTD 141
           ATIEMDG+ ET YTADETPMVSYVNVHA+LEGRR RAK SPSDD   SQGPRVIVVGP+D
Sbjct: 77  ATIEMDGTPETGYTADETPMVSYVNVHAILEGRRDRAKKSPSDDSVLSQGPRVIVVGPSD 136

Query: 142 SGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEIPL 201
           SGK+TLSRMLLSWAAKQGWKPTF+DLDIGQGSIT+PGCIAATPIEMPIDPVEGIPLE+PL
Sbjct: 137 SGKTTLSRMLLSWAAKQGWKPTFVDLDIGQGSITVPGCIAATPIEMPIDPVEGIPLEMPL 196

Query: 202 VYFHGHSAPSNNTAEIYRVIVKELAGILERQFAGNAESRAAGMVINTMGWIEGLGYELLL 261
           VYF+GH++PSNN  E+Y+V+VKELAGILERQFAGNAESRAAGMV+NTMGWIEGLGY++LL
Sbjct: 197 VYFYGHTSPSNNV-ELYKVLVKELAGILERQFAGNAESRAAGMVLNTMGWIEGLGYDMLL 255

Query: 262 HSIRTFKANVVLVLGQEKLCSMLKNELKGEPKVDVVKLQRSGGVVSRNSKVRQNARSYKI 321
           H+IRTFKANVVLVLGQEKLCS+L++ LKGEPKVDVVKLQRSGGVVSR  K RQ +RS +I
Sbjct: 256 HAIRTFKANVVLVLGQEKLCSLLRDVLKGEPKVDVVKLQRSGGVVSRPVKFRQRSRSNRI 315

Query: 322 REYFYGLGNDLSPHSNIANFSDLFVYRIGGGPQAPRSALPIGAEPAADPTRLVPVNINHD 381
           REYFYGL NDLSPHSNI+NF DLFVYR+GGGPQAPRSALPIGAEPAADPTR+V VNIN D
Sbjct: 316 REYFYGLTNDLSPHSNISNFGDLFVYRVGGGPQAPRSALPIGAEPAADPTRVVAVNINRD 375

Query: 382 LLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLIIGNI 439
           LLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYL PSAGELPSKYLI+G +
Sbjct: 376 LLHAVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLTPSAGELPSKYLILGTL 433


>Medtr8g080150.1 | polynucleotide 5-hydroxyl-kinase NOL9-like
           protein | HC | chr8:34427716-34424835 | 20130731
          Length = 380

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 132 PRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFIDLDIGQGSITIPGCIAATPIEMPIDP 191
           P  +V G ++ GKST SR LL+    +  K  +++ D+GQ   T PG ++ T I   + P
Sbjct: 32  PITLVCGASNCGKSTFSRNLLNVLLTRCNKVAYLETDVGQPEFTPPGFVSLT-IVNKVTP 90

Query: 192 VEGIP-LEIP--LVYFHGHSAPSNNT------AEIYRVIVKELAGILERQFAGNAESRAA 242
              IP L+ P   ++F   S+  + +        IY    KE     +RQ   N+     
Sbjct: 91  DLTIPCLKTPERSLFFGDVSSQKDPSTYLKYICSIYDYYRKEYCTFDKRQ---NSSKIHL 147

Query: 243 GMVINTMGWIEGLGYELLLHSIRTFKANVVLVLG 276
            +V+NT GW++G GY++L++ ++      ++ +G
Sbjct: 148 PLVVNTSGWVKGDGYKVLVNMLKYIGPTHIVKIG 181