Miyakogusa Predicted Gene

Lj5g3v2289000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2289000.1 Non Characterized Hit- tr|F6HVQ1|F6HVQ1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,73.63,0,no
description,NIF system FeS cluster assembly, NifU-like scaffold,
N-terminal; Q5WMY1_ORYSA_Q5WMY1;,CUFF.57207.1
         (272 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g073070.1 | iron-sulfer cluster scaffold protein NFU4 | HC...   375   e-104
Medtr1g069215.1 | iron-sulfer cluster scaffold protein NFU4 | HC...   369   e-102
Medtr1g069215.2 | iron-sulfer cluster scaffold protein NFU4 | HC...   369   e-102
Medtr3g073070.2 | iron-sulfer cluster scaffold protein NFU4 | HC...   360   e-100
Medtr2g036690.2 | nitrogen fixation protein NifU | HC | chr2:158...    63   3e-10
Medtr2g005900.1 | nitrogen fixation protein NifU | HC | chr2:389...    63   3e-10
Medtr2g036690.1 | nitrogen fixation protein NifU | HC | chr2:158...    63   3e-10
Medtr7g109850.1 | nitrogen fixation protein NifU | HC | chr7:450...    51   1e-06
Medtr8g038785.1 | peptidyl-prolyl cis-trans isomerase, FKBP-type...    49   4e-06

>Medtr3g073070.1 | iron-sulfer cluster scaffold protein NFU4 | HC |
           chr3:32903882-32906295 | 20130731
          Length = 275

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/208 (90%), Positives = 197/208 (94%)

Query: 65  TGQRRTMFIQTQSTPNPLSLMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRI 124
           TGQRRTMFIQTQSTPNP SLMFHPGKPVM+VGSADFPNPRSAMNSPLAKS+F IDGITR+
Sbjct: 68  TGQRRTMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFTIDGITRV 127

Query: 125 FFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIKDDDSEIV 184
           FFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSG+PLFLDSQ +++ DTAI DDDSE V
Sbjct: 128 FFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGEPLFLDSQAASSKDTAIHDDDSETV 187

Query: 185 AMIKELLETRIRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGIENML 244
           AMIKELLETRIRP VQDDGGDIVY GFDPDTGIVKL+MQGACSGCPSSSVTLKSGIENML
Sbjct: 188 AMIKELLETRIRPTVQDDGGDIVYCGFDPDTGIVKLKMQGACSGCPSSSVTLKSGIENML 247

Query: 245 MHYVPEVKGVEQELDPEGEEAALSGQME 272
           MHYVPEVKGVEQELD E EEAALSGQ E
Sbjct: 248 MHYVPEVKGVEQELDGEEEEAALSGQTE 275


>Medtr1g069215.1 | iron-sulfer cluster scaffold protein NFU4 | HC |
           chr1:29807282-29811076 | 20130731
          Length = 277

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/208 (90%), Positives = 198/208 (95%)

Query: 65  TGQRRTMFIQTQSTPNPLSLMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRI 124
           TGQRR+MFIQTQSTPNP SLMFHPGKPVM+VGSADFPNPRSAMNSPLAKS+FAIDGITR+
Sbjct: 70  TGQRRSMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFAIDGITRV 129

Query: 125 FFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIKDDDSEIV 184
           FFGSDFVTVTKSED+SWEFLKPEIFAAIMDFYSSG+PLFLDSQ +A+ DTAI DDDSE V
Sbjct: 130 FFGSDFVTVTKSEDSSWEFLKPEIFAAIMDFYSSGEPLFLDSQAAASKDTAIHDDDSETV 189

Query: 185 AMIKELLETRIRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGIENML 244
           AMIKELLETRIRP VQDDGGDIVY GFDPDTGIVKL+MQGACSGCPSSSVTLKSGIENML
Sbjct: 190 AMIKELLETRIRPTVQDDGGDIVYCGFDPDTGIVKLKMQGACSGCPSSSVTLKSGIENML 249

Query: 245 MHYVPEVKGVEQELDPEGEEAALSGQME 272
           MHYVPEVKGVEQELD E EEAALSGQ E
Sbjct: 250 MHYVPEVKGVEQELDAEEEEAALSGQTE 277


>Medtr1g069215.2 | iron-sulfer cluster scaffold protein NFU4 | HC |
           chr1:29807282-29811076 | 20130731
          Length = 277

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/208 (90%), Positives = 198/208 (95%)

Query: 65  TGQRRTMFIQTQSTPNPLSLMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRI 124
           TGQRR+MFIQTQSTPNP SLMFHPGKPVM+VGSADFPNPRSAMNSPLAKS+FAIDGITR+
Sbjct: 70  TGQRRSMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFAIDGITRV 129

Query: 125 FFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIKDDDSEIV 184
           FFGSDFVTVTKSED+SWEFLKPEIFAAIMDFYSSG+PLFLDSQ +A+ DTAI DDDSE V
Sbjct: 130 FFGSDFVTVTKSEDSSWEFLKPEIFAAIMDFYSSGEPLFLDSQAAASKDTAIHDDDSETV 189

Query: 185 AMIKELLETRIRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGIENML 244
           AMIKELLETRIRP VQDDGGDIVY GFDPDTGIVKL+MQGACSGCPSSSVTLKSGIENML
Sbjct: 190 AMIKELLETRIRPTVQDDGGDIVYCGFDPDTGIVKLKMQGACSGCPSSSVTLKSGIENML 249

Query: 245 MHYVPEVKGVEQELDPEGEEAALSGQME 272
           MHYVPEVKGVEQELD E EEAALSGQ E
Sbjct: 250 MHYVPEVKGVEQELDAEEEEAALSGQTE 277


>Medtr3g073070.2 | iron-sulfer cluster scaffold protein NFU4 | HC |
           chr3:32903882-32905861 | 20130731
          Length = 291

 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/194 (88%), Positives = 180/194 (92%)

Query: 65  TGQRRTMFIQTQSTPNPLSLMFHPGKPVMEVGSADFPNPRSAMNSPLAKSLFAIDGITRI 124
           TGQRRTMFIQTQSTPNP SLMFHPGKPVM+VGSADFPNPRSAMNSPLAKS+F IDGITR+
Sbjct: 68  TGQRRTMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFTIDGITRV 127

Query: 125 FFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGQPLFLDSQTSAAMDTAIKDDDSEIV 184
           FFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSG+PLFLDSQ +++ DTAI DDDSE V
Sbjct: 128 FFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGEPLFLDSQAASSKDTAIHDDDSETV 187

Query: 185 AMIKELLETRIRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGIENML 244
           AMIKELLETRIRP VQDDGGDIVY GFDPDTGIVKL+MQGACSGCPSSSVTLKSGIENML
Sbjct: 188 AMIKELLETRIRPTVQDDGGDIVYCGFDPDTGIVKLKMQGACSGCPSSSVTLKSGIENML 247

Query: 245 MHYVPEVKGVEQEL 258
           MHYVPEV  +    
Sbjct: 248 MHYVPEVTSLHYHF 261


>Medtr2g036690.2 | nitrogen fixation protein NifU | HC |
           chr2:15890404-15888859 | 20130731
          Length = 202

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 195 IRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGV 254
           +RP +  DGG++     + D  +V L++QGAC  CPSS++TLK GIE  L   +PE+  V
Sbjct: 103 VRPGLMADGGNVALH--EIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEV 160

Query: 255 EQELDPE 261
           EQ LD E
Sbjct: 161 EQILDTE 167


>Medtr2g005900.1 | nitrogen fixation protein NifU | HC |
           chr2:389162-393329 | 20130731
          Length = 223

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 2/67 (2%)

Query: 195 IRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGV 254
           IRP +  DGG++     D +  +V+L++QGAC  CPSS +T+K GIE  LM  +PE+  V
Sbjct: 85  IRPYLISDGGNVALHEIDGN--VVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAV 142

Query: 255 EQELDPE 261
           E   D E
Sbjct: 143 EPVTDEE 149


>Medtr2g036690.1 | nitrogen fixation protein NifU | HC |
           chr2:15890490-15888331 | 20130731
          Length = 242

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 195 IRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGV 254
           +RP +  DGG++     + D  +V L++QGAC  CPSS++TLK GIE  L   +PE+  V
Sbjct: 103 VRPGLMADGGNVALH--EIDGLVVILKLQGACGSCPSSTMTLKMGIETRLRDKIPEILEV 160

Query: 255 EQELDPE 261
           EQ LD E
Sbjct: 161 EQILDTE 167


>Medtr7g109850.1 | nitrogen fixation protein NifU | HC |
           chr7:45003868-45005708 | 20130731
          Length = 216

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 182 EIVAMIKELLETRIRPAVQDDGGDIVYRGFDPDTGIVKLQMQGACSGCPSSSVTLKSGIE 241
           E+ A   +L+   +RP +  DGG++     +   G+V L++QGAC  CPSS+ T+K GIE
Sbjct: 68  ELTASNVDLVLEDVRPYLISDGGNVDVVSVE--NGVVSLKLQGACESCPSSTTTMKMGIE 125

Query: 242 NML 244
            +L
Sbjct: 126 RVL 128


>Medtr8g038785.1 | peptidyl-prolyl cis-trans isomerase, FKBP-type
           protein | LC | chr8:14392416-14387801 | 20130731
          Length = 594

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 5/92 (5%)

Query: 166 SQTSAAMDTAIKDDDSEIVAMIKELLETRIRPAVQDDGGDIVYRGFDPDTGIVKLQMQGA 225
           +Q+S  + +A K D   + A   +L+   +RP +  DGG++       + G+V L++QG 
Sbjct: 55  NQSSMGLYSAKKFD---LTAPNVDLVLEDVRPYLISDGGNVDV--VSVENGVVSLKLQGV 109

Query: 226 CSGCPSSSVTLKSGIENMLMHYVPEVKGVEQE 257
           C  CPSS+ T+K G++ +L     EVK ++++
Sbjct: 110 CESCPSSTTTMKMGMKRVLKEKFEEVKVLKKK 141