Miyakogusa Predicted Gene
- Lj5g3v2265250.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2265250.1 tr|A0DLH3|A0DLH3_PARTE Chromosome undetermined
scaffold_55, whole genome shotgun sequence
OS=Paramec,31.58,5e-18,RNA-binding domain, RBD,NULL; Retrovirus zinc
finger-like domains,Zinc finger, CCHC-type; no descrip,CUFF.57150.1
(573 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 303 4e-82
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 60 7e-09
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 59 1e-08
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 55 1e-07
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 1e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 54 3e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 54 3e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 54 3e-07
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-07
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 54 6e-07
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 50 7e-06
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 303 bits (775), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 156/294 (53%), Positives = 186/294 (63%), Gaps = 55/294 (18%)
Query: 144 ENGSNNEPEMSEATELTKTNPSISEDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITE 203
EN SN++ EM ++ EL T + S++NG V TKVYVGGIPYYS+EDDI SYFE CGTITE
Sbjct: 189 ENDSNHQEEMPQSVELANTTTTTSQENGDVATKVYVGGIPYYSSEDDIHSYFEGCGTITE 248
Query: 204 VDCLSFPDTGKFRGIALISFKTEXXXXXXXXXXXXXMGGLFLKIQPYKIQSQKSTRFAPE 263
++C++FPDTGKFRGIA+ISFKTE MGGLFLKIQP K + ++TRF PE
Sbjct: 249 INCMTFPDTGKFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPCK--ATQATRFTPE 306
Query: 264 TVEGYNRIYVGNLSGDIKEGELRKFFSNCNITSLRFGMDKETGEFKGYTHVDFGDSQSLK 323
EGYNRIYVG+LS +I E ELRKFFSNCN+ ++R GMDKETGEF+GY HVDFGDSQSLK
Sbjct: 307 MKEGYNRIYVGSLSWEITEEELRKFFSNCNVKAIRLGMDKETGEFRGYAHVDFGDSQSLK 366
Query: 324 TALTLDQCVLLGRPVRVSHAVPL--------------------KNL-------------- 349
TAL LDQ VL GRPVR+S AVPL K++
Sbjct: 367 TALALDQSVLFGRPVRISCAVPLNKKPVAGEKSVAVEKPGAGEKSIAVEKSVIAEKSVAG 426
Query: 350 -------KKKTDEEPGSTG------------NTKMKNRRCYNCHEKGHFDSQCP 384
K E+PG+ G + K KNR CY C +KGH S+CP
Sbjct: 427 EKSGAGEKSFAVEQPGAGGKPSSVEQPSSVASGKRKNRMCYGCRQKGHNLSECP 480
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 252 IQSQKSTRFAPET----VE--GYNRIYVGNLSGDIKEGELRKFFSNCN-ITSLRFGMDKE 304
+ + KS + AP T +E G ++VGNLS ++ ++ KFF +C + +RF D+E
Sbjct: 341 VDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE 400
Query: 305 TGEFKGYTHVDFGDSQSLKTALTLDQCVLLGRPVRVSHA 343
G FKG+ HV+F +++ ++AL ++ LL R VR+ A
Sbjct: 401 -GRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLA 438
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 164 PSISEDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISF 223
P+ +N G T ++VG + + DI +F+ CG + +V S + G+F+G + F
Sbjct: 354 PATPIENSGSKT-LFVGNLSFSVQRSDIEKFFQDCGEVVDVR-FSSDEEGRFKGFGHVEF 411
Query: 224 KTEXXXXXXXXXXXXXMGGLFLKIQPYKIQ-SQKSTRFAPETVEGYNR----------IY 272
+ M G L + ++ +++ F P Y+ ++
Sbjct: 412 AS-----AEAAQSALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVF 466
Query: 273 VGNLSGDIKEGELRK-----FFSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL 326
V ++ E E+R F C T + D E+G KG+ ++DF DS S AL
Sbjct: 467 VRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 526
Query: 327 TLDQCVLLGRPVRVSHAVP 345
L + L G + V A P
Sbjct: 527 ELHESELDGYQLSVDEAKP 545
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 252 IQSQKSTRFAPET----VE--GYNRIYVGNLSGDIKEGELRKFFSNCN-ITSLRFGMDKE 304
+ + KS + AP T +E G ++VGNLS ++ ++ KFF +C + +RF D+E
Sbjct: 353 VDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE 412
Query: 305 TGEFKGYTHVDFGDSQSLKTALTLDQCVLLGRPVRVSHA 343
G FKG+ HV+F +++ ++AL ++ LL R VR+ A
Sbjct: 413 -GRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLA 450
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 164 PSISEDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISF 223
P+ +N G T ++VG + + DI +F+ CG + +V S + G+F+G + F
Sbjct: 366 PATPIENSGSKT-LFVGNLSFSVQRSDIEKFFQDCGEVVDVR-FSSDEEGRFKGFGHVEF 423
Query: 224 KTEXXXXXXXXXXXXXMGGLFLKIQPYKIQ-SQKSTRFAPETVEGYNR----------IY 272
+ M G L + ++ +++ F P Y+ ++
Sbjct: 424 AS-----AEAAQSALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVF 478
Query: 273 VGNLSGDIKEGELRK-----FFSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL 326
V ++ E E+R F C T + D E+G KG+ ++DF DS S AL
Sbjct: 479 VRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 538
Query: 327 TLDQCVLLGRPVRVSHAVP 345
L + L G + V A P
Sbjct: 539 ELHESELDGYQLSVDEAKP 557
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 252 IQSQKSTRFAPET----VE--GYNRIYVGNLSGDIKEGELRKFFSNCN-ITSLRFGMDKE 304
+ + KS + AP T +E G ++VGNLS ++ ++ KFF +C + +RF D+E
Sbjct: 306 VDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE 365
Query: 305 TGEFKGYTHVDFGDSQSLKTALTLDQCVLLGRPVRVSHA 343
G FKG+ HV+F +++ ++AL ++ LL R VR+ A
Sbjct: 366 -GRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLA 403
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 164 PSISEDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISF 223
P+ +N G T ++VG + + DI +F+ CG + +V S + G+F+G + F
Sbjct: 319 PATPIENSGSKT-LFVGNLSFSVQRSDIEKFFQDCGEVVDVR-FSSDEEGRFKGFGHVEF 376
Query: 224 KTEXXXXXXXXXXXXXMGGLFLKIQPYKIQ-SQKSTRFAPETVEGYNR----------IY 272
+ M G L + ++ +++ F P Y+ ++
Sbjct: 377 AS-----AEAAQSALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVF 431
Query: 273 VGNLSGDIKEGELRK-----FFSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL 326
V ++ E E+R F C T + D E+G KG+ ++DF DS S AL
Sbjct: 432 VRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 491
Query: 327 TLDQCVLLGRPVRVSHAVP 345
L + L G + V A P
Sbjct: 492 ELHESELDGYQLSVDEAKP 510
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 8/99 (8%)
Query: 252 IQSQKSTRFAPET----VE--GYNRIYVGNLSGDIKEGELRKFFSNCN-ITSLRFGMDKE 304
+ + KS + AP T +E G ++VGNLS ++ ++ KFF +C + +RF D+E
Sbjct: 318 VDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE 377
Query: 305 TGEFKGYTHVDFGDSQSLKTALTLDQCVLLGRPVRVSHA 343
G FKG+ HV+F +++ ++AL ++ LL R VR+ A
Sbjct: 378 -GRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLA 415
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 24/199 (12%)
Query: 164 PSISEDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISF 223
P+ +N G T ++VG + + DI +F+ CG + +V S + G+F+G + F
Sbjct: 331 PATPIENSGSKT-LFVGNLSFSVQRSDIEKFFQDCGEVVDVR-FSSDEEGRFKGFGHVEF 388
Query: 224 KTEXXXXXXXXXXXXXMGGLFLKIQPYKIQ-SQKSTRFAPETVEGYNR----------IY 272
+ M G L + ++ +++ F P Y+ ++
Sbjct: 389 AS-----AEAAQSALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVF 443
Query: 273 VGNLSGDIKEGELRK-----FFSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL 326
V ++ E E+R F C T + D E+G KG+ ++DF DS S AL
Sbjct: 444 VRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKAL 503
Query: 327 TLDQCVLLGRPVRVSHAVP 345
L + L G + V A P
Sbjct: 504 ELHESELDGYQLSVDEAKP 522
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 7/174 (4%)
Query: 176 KVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKT-EXXXXXXXX 234
K++VG P+ + + F GT+ + + T RG ++ T E
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 235 XXXXXMGGLFL---KIQPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDIKEGELRKFFS- 290
G L K P + +++ R AP T E RIYV NL+ ++ L + FS
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTER-APRTFEPVLRIYVANLAWEVDNSRLEQVFSE 228
Query: 291 NCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL-TLDQCVLLGRPVRVSHA 343
+ I S R D+ETG +G+ V D + A+ LD L GR +RVS A
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVA 282
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 4/171 (2%)
Query: 176 KVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKT-EXXXXXXXX 234
K++VG +P+ + + FE GT+ + + DT + RG ++ T E
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 235 XXXXXMGGLFLKIQPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDIKEGELRKFFS-NCN 293
+ G L + + R P T R YVGNL D+ L + FS +
Sbjct: 183 FSGFELDGRLLTVNKAAPRGTPRLR-QPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGK 241
Query: 294 ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL-TLDQCVLLGRPVRVSHA 343
+ S + D+ETG +G+ V + + A+ LD GR +RV+ A
Sbjct: 242 VESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 292
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 9/174 (5%)
Query: 177 VYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXXXXXX 236
V+ +P +TE D+ +F G + +V + ++ + +G+ I F
Sbjct: 204 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALS 263
Query: 237 XXXMGGLFLKIQPYK-----IQSQKSTRFAPETVEGY--NRIYVGNLSGDIKEGELRKFF 289
+ G + ++P + +QS S+ A G ++YVGNL ++ E LR+ F
Sbjct: 264 GQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLREIF 323
Query: 290 S-NCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLD-QCVLLGRPVRVS 341
I ++ +D ETG KG+ V F + K A +L+ + + GR ++VS
Sbjct: 324 EPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVS 377
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 271 IYVGNLSGDIKEGELRKFFSNCN-ITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLD 329
I V NLS ++ ++ F +C + +RF D+E G F+G+ +V+FG +++ K AL LD
Sbjct: 164 ICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDRE-GRFRGFGYVEFGTAEAAKKALKLD 222
Query: 330 QCVLLGRPVRVSHAV 344
LL R +RV A+
Sbjct: 223 STELLNRRMRVDIAI 237
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Query: 177 VYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXXXXXX 236
V+ +P +TE D+ +F G + +V + ++ + +G+ I F
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALS 276
Query: 237 XXXMGGLFLKIQPYK-----IQSQKSTRFAPETVEGYN----RIYVGNLSGDIKEGELRK 287
+ G + ++P + +QS +T A V Y ++YVGNL ++ E +LR+
Sbjct: 277 GQLLLGQPVMVKPSEAEKNLVQSNTTTG-AAGVVGPYGAVDRKLYVGNLHFNMTESQLRE 335
Query: 288 FFS-NCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLD-QCVLLGRPVRVS 341
F + ++ +D ETG KG+ + F + K A +L+ + + GR ++VS
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Query: 177 VYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXXXXXX 236
V+ +P +TE D+ +F G + +V + ++ + +G+ I F
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALS 276
Query: 237 XXXMGGLFLKIQPYK-----IQSQKSTRFAPETVEGYN----RIYVGNLSGDIKEGELRK 287
+ G + ++P + +QS +T A V Y ++YVGNL ++ E +LR+
Sbjct: 277 GQLLLGQPVMVKPSEAEKNLVQSNTTTG-AAGVVGPYGAVDRKLYVGNLHFNMTESQLRE 335
Query: 288 FFS-NCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLD-QCVLLGRPVRVS 341
F + ++ +D ETG KG+ + F + K A +L+ + + GR ++VS
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVS 391
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Query: 177 VYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKTEXXXXXXXXXX 236
V+ +P +TE D+ +F G + +V + ++ + +G+ I F
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALS 276
Query: 237 XXXMGGLFLKIQPYK-----IQSQKSTRFAPETVEGYN----RIYVGNLSGDIKEGELRK 287
+ G + ++P + +QS +T A V Y ++YVGNL ++ E +LR+
Sbjct: 277 GQLLLGQPVMVKPSEAEKNLVQSNTTTG-AAGVVGPYGAVDRKLYVGNLHFNMTESQLRE 335
Query: 288 FFS-NCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALTLD-QCVLLGRPVRVS 341
F + ++ +D ETG KG+ + F + K A +L+ + + GR ++VS
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVS 391
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Query: 176 KVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISF-KTEXXXXXXXX 234
+++VG +P+ + + F G + V+ L T + RG A ++ E
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 235 XXXXXMGGLFLKIQPYKIQSQKSTRFAPETVEGY----NRIYVGNLSGDIKEGELRKFFS 290
+GG +K+ ++ T GY ++IY GNL D+ LRK F+
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFA 228
Query: 291 NC-NITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALT-LDQCVLLGRPVRVSHAV 344
+ S + ++ G+ +GY V F ++ ++ AL+ ++ + GRP+R+ AV
Sbjct: 229 KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Query: 176 KVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISF-KTEXXXXXXXX 234
+++VG +P+ + + F G + V+ L T + RG A ++ E
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 235 XXXXXMGGLFLKIQPYKIQSQKSTRFAPETVEGY----NRIYVGNLSGDIKEGELRKFFS 290
+GG +K+ ++ T GY ++IY GNL D+ LRK F+
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFA 228
Query: 291 NC-NITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALT-LDQCVLLGRPVRVSHAV 344
+ S + ++ G+ +GY V F ++ ++ AL+ ++ + GRP+R+ AV
Sbjct: 229 KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 14/206 (6%)
Query: 150 EPEMSEATELTKTNPSISEDNGGVPTKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSF 209
EPE S+ + + + D+ G ++YVG +P+ T + F GT+ V+ +
Sbjct: 87 EPETSDKPKQDEEQKVTTSDDAG---RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYD 143
Query: 210 PDTGKFRGIALISFKT-EXXXXXXXXXXXXXMGGLFLKIQ--------PYKIQSQKSTRF 260
T + RG A ++ K+ E +GG K+ + QK
Sbjct: 144 RLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNS 203
Query: 261 APETVEGYNRIYVGNLSGDIKEGELRKFF-SNCNITSLRFGMDKETGEFKGYTHVDFGDS 319
V+ ++IY GNL + +LR F + + +++ G +G+ V F +
Sbjct: 204 YRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETA 263
Query: 320 QSLKTAL-TLDQCVLLGRPVRVSHAV 344
+ L+ AL ++ + GRP+R++ A
Sbjct: 264 EHLEAALNAMNGVEVQGRPLRLNLAA 289
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 7/172 (4%)
Query: 175 TKVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFK-TEXXXXXXX 233
TK+Y G +PY + E G+ ++ L DTGK RG A ++ E
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 234 XXXXXXMGGLFLKIQPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDIKEGELRKFFS-NC 292
G L++ + + + PET +++VGNL+ + L + F +
Sbjct: 173 NLDGKEFMGRTLRVN-FSDKPKPKEPLYPET---EYKLFVGNLAWTVTSESLTQAFQEHG 228
Query: 293 NITSLRFGMDKETGEFKGYTHVDFGDSQSLKTALT-LDQCVLLGRPVRVSHA 343
+ R D ETG+ +GY V + + TAL +D L GR +RVS A
Sbjct: 229 TVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 176 KVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKT-EXXXXXXXX 234
K++VG P+ + + F GT+ + + T RG ++ T E
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 235 XXXXXMGGLFL---KIQPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDIKEGELRKFFS- 290
G L K P + +++ R AP T E RIYV NL+ ++ L + FS
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTER-APRTFEPVLRIYVANLAWEVDNSRLEQVFSE 228
Query: 291 NCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL 326
+ I S R D+ETG +G+ V D + A+
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAI 264
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 176 KVYVGGIPYYSTEDDIRSYFESCGTITEVDCLSFPDTGKFRGIALISFKT-EXXXXXXXX 234
K+YVG IP + D++ + G + + + + + + R A ++ KT E
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 235 XXXXXMGGLFLKI---------QPYKIQSQKSTRFAPETVEGYNRIYVGNLSGDIKEGEL 285
+GG +K+ + +Q+ +ST V+ ++YVGNL+ ++ L
Sbjct: 121 LNGTEIGGREIKVNITEKPLTTEGLPVQAGEST-----FVDSPYKVYVGNLAKNVTSDSL 175
Query: 286 RKFFS-NCNITSLRFGMDKETGEFKGYTHVDFGDSQSLKTAL-TLDQCVLLGRPVRVSHA 343
+KFFS N S + T + G+ V F + ++ A+ + + +L G+ +RV+ A
Sbjct: 176 KKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235