Miyakogusa Predicted Gene

Lj5g3v2263950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2263950.1 tr|A9T9J7|A9T9J7_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,46.9,3e-17,G-patch,G-patch domain; coiled-coil,NULL; glycine
rich nucleic binding domain,G-patch domain; seg,NU,CUFF.57122.1
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g115255.2 | DExH-box splicing factor-binding site protein ...   107   2e-24
Medtr1g115255.1 | DExH-box splicing factor-binding site protein ...   107   2e-24
Medtr1g115255.3 | DExH-box splicing factor-binding site protein ...   106   5e-24
Medtr7g111520.1 | D111/G-patch domain protein | HC | chr7:457672...    50   4e-07
Medtr8g070990.7 | RNA-binding protein, putative | HC | chr8:3009...    47   3e-06
Medtr8g070990.11 | RNA-binding protein, putative | HC | chr8:300...    47   3e-06
Medtr8g070990.5 | RNA-binding protein, putative | HC | chr8:3009...    47   3e-06
Medtr8g070990.8 | RNA-binding protein, putative | HC | chr8:3009...    47   3e-06
Medtr8g070990.2 | RNA-binding protein, putative | HC | chr8:3009...    47   3e-06
Medtr8g070990.1 | RNA-binding protein, putative | HC | chr8:3009...    47   3e-06
Medtr8g070990.3 | RNA-binding protein, putative | HC | chr8:3009...    47   3e-06

>Medtr1g115255.2 | DExH-box splicing factor-binding site protein |
           HC | chr1:51947201-51951240 | 20130731
          Length = 134

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVKKMAVKSDDSD 77
           INSSNIGFQLLKK GWKEGTGLGISEQGRLEPVETRVKNNKRGLGAD VKK  VK    D
Sbjct: 24  INSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPGHGD 83

Query: 78  AXXXXXXXXXXXXXXXXXALSKRXXXXXXXXXXXXXXXXXXXXXXXXWPENV 129
           +                 ALSKR                        WPENV
Sbjct: 84  S-SKGDNKQEQLSQKKAKALSKRVRKMQEIEKKMQEKEFERAFFREFWPENV 134


>Medtr1g115255.1 | DExH-box splicing factor-binding site protein |
           HC | chr1:51947080-51951240 | 20130731
          Length = 122

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVKKMAVKSDDSD 77
           INSSNIGFQLLKK GWKEGTGLGISEQGRLEPVETRVKNNKRGLGAD VKK  VK    D
Sbjct: 12  INSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPGHGD 71

Query: 78  AXXXXXXXXXXXXXXXXXALSKRXXXXXXXXXXXXXXXXXXXXXXXXWPENV 129
           +                 ALSKR                        WPENV
Sbjct: 72  S-SKGDNKQEQLSQKKAKALSKRVRKMQEIEKKMQEKEFERAFFREFWPENV 122


>Medtr1g115255.3 | DExH-box splicing factor-binding site protein |
           HC | chr1:51947092-51951240 | 20130731
          Length = 127

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 63/116 (54%), Gaps = 4/116 (3%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVKKMAVKSDDSD 77
           INSSNIGFQLLKK GWKEGTGLGISEQGRLEPVETRVKNNKRGLGAD VKK  VK    D
Sbjct: 12  INSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPGHGD 71

Query: 78  AX----XXXXXXXXXXXXXXXXALSKRXXXXXXXXXXXXXXXXXXXXXXXXWPENV 129
           +                     ALSKR                        WPENV
Sbjct: 72  SSKGDNKQVIFFKEQLSQKKAKALSKRVRKMQEIEKKMQEKEFERAFFREFWPENV 127


>Medtr7g111520.1 | D111/G-patch domain protein | HC |
           chr7:45767228-45771675 | 20130731
          Length = 438

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 36/45 (80%), Gaps = 1/45 (2%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLG 62
           I SSNIGF+LL+K GWK G GLG +EQG +EP+++ +++ + G+G
Sbjct: 196 ITSSNIGFKLLQKMGWK-GKGLGKNEQGIVEPIKSGIRDPRLGVG 239


>Medtr8g070990.7 | RNA-binding protein, putative | HC |
           chr8:30090202-30098364 | 20130731
          Length = 956

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVK 67
           I+  N+G ++L+  GW+EG GLG    G +EPV+T+   N+ GLG+ + K
Sbjct: 879 IDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKK 928


>Medtr8g070990.11 | RNA-binding protein, putative | HC |
           chr8:30090202-30098383 | 20130731
          Length = 956

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVK 67
           I+  N+G ++L+  GW+EG GLG    G +EPV+T+   N+ GLG+ + K
Sbjct: 879 IDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKK 928


>Medtr8g070990.5 | RNA-binding protein, putative | HC |
           chr8:30090202-30098364 | 20130731
          Length = 956

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVK 67
           I+  N+G ++L+  GW+EG GLG    G +EPV+T+   N+ GLG+ + K
Sbjct: 879 IDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKK 928


>Medtr8g070990.8 | RNA-binding protein, putative | HC |
           chr8:30090202-30098355 | 20130731
          Length = 955

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 18  INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVK 67
           I+  N+G ++L+  GW+EG GLG    G +EPV+T+   N+ GLG+ + K
Sbjct: 878 IDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKK 927


>Medtr8g070990.2 | RNA-binding protein, putative | HC |
            chr8:30090202-30098355 | 20130731
          Length = 1062

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 18   INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVK 67
            I+  N+G ++L+  GW+EG GLG    G +EPV+T+   N+ GLG+ + K
Sbjct: 985  IDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKK 1034


>Medtr8g070990.1 | RNA-binding protein, putative | HC |
            chr8:30090202-30098364 | 20130731
          Length = 1063

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 18   INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVK---KMAVKSD 74
            I+  N+G ++L+  GW+EG GLG    G +EPV+T+   N+ GLG+ + K    + V++ 
Sbjct: 986  IDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAG 1045

Query: 75   DS 76
            DS
Sbjct: 1046 DS 1047


>Medtr8g070990.3 | RNA-binding protein, putative | HC |
            chr8:30090202-30098383 | 20130731
          Length = 1063

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 18   INSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVK---KMAVKSD 74
            I+  N+G ++L+  GW+EG GLG    G +EPV+T+   N+ GLG+ + K    + V++ 
Sbjct: 986  IDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAG 1045

Query: 75   DS 76
            DS
Sbjct: 1046 DS 1047