Miyakogusa Predicted Gene

Lj5g3v2258590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2258590.1 Non Characterized Hit- tr|I1LF87|I1LF87_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20745
PE,73.08,0.00000000003,seg,NULL; TCP,Transcription factor,
TCP,CUFF.57098.1
         (259 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g114380.1 | TCP family transcription factor | HC | chr1:51...    67   2e-11
Medtr1g038650.1 | TCP family transcription factor | HC | chr1:14...    55   1e-07
Medtr1g038650.2 | TCP family transcription factor | HC | chr1:14...    55   1e-07

>Medtr1g114380.1 | TCP family transcription factor | HC |
           chr1:51614461-51616519 | 20130731
          Length = 257

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 42/54 (77%), Gaps = 10/54 (18%)

Query: 70  MSSSDGTT------NGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           MS+ DGTT      NGS+IDP R    QQL+VKKPP+KDRHSKVDGRGRRIRMP
Sbjct: 1   MSNPDGTTTTTTTTNGSIIDPNR----QQLAVKKPPAKDRHSKVDGRGRRIRMP 50


>Medtr1g038650.1 | TCP family transcription factor | HC |
           chr1:14250840-14248871 | 20130731
          Length = 235

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 90  QQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           Q  ++VKKPPSKDRHSKVDGRGRRIRMP
Sbjct: 22  QNAITVKKPPSKDRHSKVDGRGRRIRMP 49


>Medtr1g038650.2 | TCP family transcription factor | HC |
           chr1:14250840-14248871 | 20130731
          Length = 235

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 90  QQQLSVKKPPSKDRHSKVDGRGRRIRMP 117
           Q  ++VKKPPSKDRHSKVDGRGRRIRMP
Sbjct: 22  QNAITVKKPPSKDRHSKVDGRGRRIRMP 49