Miyakogusa Predicted Gene

Lj5g3v2258230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2258230.1 Non Characterized Hit- tr|A5C8I0|A5C8I0_VITVI
Putative uncharacterized protein (Fragment) OS=Vitis
v,33.81,5e-19,UBN2,NULL; seg,NULL; GAG-POL-RELATED
RETROTRANSPOSON,NULL,gene.g63373.t1.1
         (214 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g024145.1 | lysine decarboxylase family protein | LC | chr...    54   1e-07

>Medtr1g024145.1 | lysine decarboxylase family protein | LC |
           chr1:7882927-7885168 | 20130731
          Length = 257

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 46/75 (61%)

Query: 58  EEDKGKADEQQVEKDRMLNQKALLLICQSMELSVFEKIFHAKSAKEAWEILINTYEGADP 117
           +E+  +A     +K R  + K L LI Q ++ ++FEK    +SAK  W+I+ N Y G + 
Sbjct: 9   QENATEAQRTANQKLRKKDAKGLFLIHQCIDPNIFEKKIDQESAKRTWDIIKNAYGGDEK 68

Query: 118 VKRTRLQGLKRQFEL 132
           +K+ +L+ L+RQ+E+
Sbjct: 69  IKKVKLKALRRQYEI 83