Miyakogusa Predicted Gene

Lj5g3v2244650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2244650.1 tr|A0B9X7|A0B9X7_ORYSA OSIGBa0135C09.3 protein
OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1,33.56,2e-19,PREDICTED
PROTEIN (FRAGMENT),NULL; GAG-POL-RELATED RETROTRANSPOSON,NULL;
gag_pre-integrs,GAG-pre-int,CUFF.57044.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g033045.1 | hypothetical protein | LC | chr4:11450871-1145...    47   8e-06

>Medtr4g033045.1 | hypothetical protein | LC |
           chr4:11450871-11451917 | 20130731
          Length = 187

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 15/133 (11%)

Query: 21  EKGLLLQIKMKTNRM-FVLHTMPKKSEQSSLDQCL------QITSVKEDVLTLWHRRF-- 71
           E  +L++ K KT  + F+  + PK  + S    C+       +  V E  L + H +   
Sbjct: 39  ESKVLIKSKPKTLELKFLKSSKPKARKDSRPKTCMLHRETKALIMVSEQWLLVTHDKIKA 98

Query: 72  -----GHLSYQNLMKLEKQKLVTGLPKLTGNGE-ICSTCMVGKQQRKAFPKQSKWKSTQR 125
                 H   + + KL KQKLV GLP+L  + + +C  C  GK  +  F  ++   +++ 
Sbjct: 99  FVPNSDHERGRLISKLIKQKLVKGLPELQYHSDALCRACQKGKSVKTTFKPKNIVSTSRP 158

Query: 126 LQLLHADLCGPIT 138
           L+LLH DL GP++
Sbjct: 159 LELLHIDLFGPVS 171