Miyakogusa Predicted Gene

Lj5g3v2241460.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2241460.3 Non Characterized Hit- tr|I3SEW9|I3SEW9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.31,0,RIBOSOMAL_S17,Ribosomal protein S17, conserved site;
arch_S17P: archaeal ribosomal protein S17P,Ribo,CUFF.57331.3
         (146 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g076830.1 | 40S ribosomal protein S11-1 | HC | chr8:325885...   266   7e-72
Medtr4g116410.1 | 40S ribosomal protein S11-1 | HC | chr4:482162...   262   8e-71
Medtr1g017780.1 | 40S ribosomal protein S11-1 | HC | chr1:504633...   255   9e-69

>Medtr8g076830.1 | 40S ribosomal protein S11-1 | HC |
           chr8:32588568-32586048 | 20130731
          Length = 160

 Score =  266 bits (679), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 126/146 (86%), Positives = 131/146 (89%)

Query: 1   MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXXNRFWKSIGLGFKTPRDAIEGSYIDKKCP 60
           MAEQTEKAFLKQPKVFLCS             NRFWKS+GLGFKTPR+A EG+YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPREATEGTYIDKKCP 60

Query: 61  FTGNVSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGNVS+RGRILAGTCHSAKM RTIIVRRNYLHFIKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GDHVIIGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146


>Medtr4g116410.1 | 40S ribosomal protein S11-1 | HC |
           chr4:48216261-48218581 | 20130731
          Length = 160

 Score =  262 bits (670), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 124/146 (84%), Positives = 132/146 (90%)

Query: 1   MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXXNRFWKSIGLGFKTPRDAIEGSYIDKKCP 60
           MAEQTEKAFLKQPKVFLCS             NRF+KS+GLGFKTPR+AI+G+YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGNVSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGNVS+RGRILAGTCHSAKM RTI+VRRNYLHFIKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GDHVIIGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146


>Medtr1g017780.1 | 40S ribosomal protein S11-1 | HC |
           chr1:5046332-5048547 | 20130731
          Length = 161

 Score =  255 bits (652), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 130/146 (89%)

Query: 1   MAEQTEKAFLKQPKVFLCSXXXXXXXXXXXXXNRFWKSIGLGFKTPRDAIEGSYIDKKCP 60
           MAEQTEKAFLKQ KVFLCS             NRF K++GLGFKTPR+AIEG+YIDKKCP
Sbjct: 1   MAEQTEKAFLKQNKVFLCSKISGKGKRPGKGGNRFHKTVGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGNVSVRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGNVS+RGRI++GTCHSAKM +TI+VRRNYLHFIKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGNVSIRGRIISGTCHSAKMNKTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GDHVIIGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146