Miyakogusa Predicted Gene

Lj5g3v2241270.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2241270.2 Non Characterized Hit- tr|D8RHS1|D8RHS1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,28.24,0.00000000000001,coiled-coil,NULL; seg,NULL,CUFF.57023.2
         (369 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g112360.1 | hypothetical protein | HC | chr1:50864884-5086...   385   e-107

>Medtr1g112360.1 | hypothetical protein | HC |
           chr1:50864884-50868884 | 20130731
          Length = 283

 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/326 (63%), Positives = 237/326 (72%), Gaps = 47/326 (14%)

Query: 44  GDEKAMMTPWEQHSGVIKLSRYDYNAPASLLLHSHSGFLITCTIKREKSATKEALSILEK 103
           G+E+  M PWEQHS VI+L R+DYNAP+SLL HSHS FLITCTIKREKSATKEA+++L  
Sbjct: 5   GEEE--MKPWEQHSSVIRLPRFDYNAPSSLLTHSHSAFLITCTIKREKSATKEAINLLHN 62

Query: 104 FVGAFNAGGFECSKNPGEYSSFKRMRVDTQDIGGECLDVKETESVTDNSGDGKVLSPAKA 163
           F+               +  S KR R+D +D GG                 G+V      
Sbjct: 63  FL-------------LNDDVSSKRRRLDNKDGGG-----------------GEV------ 86

Query: 164 EAEDKDGVTDLSLVKLTRNGLLLFIYPNNMFPDTVNIVSNIIQSLESGSTSLPVWCHRIF 223
                   TDLSLVKL RNGL+LFI+P + F DTV IVSNIIQ+LES   +LP+WCHRI 
Sbjct: 87  -------TTDLSLVKLIRNGLVLFIFPQDTFHDTVPIVSNIIQALESRKITLPLWCHRIL 139

Query: 224 PIQATCRLNEKELQEVVSMLVKKFLASKQGKLERPLKFAVGYNRRGIEDTKFAKENSNGS 283
           PIQATC LNEKELQEVVSMLVKKF+ + Q +L RPLKFAVG+NRRGIE+TK AKEN NGS
Sbjct: 140 PIQATCSLNEKELQEVVSMLVKKFVDANQDQLGRPLKFAVGFNRRGIEETKSAKENLNGS 199

Query: 284 NAFSLLDRNKCFSVVASAVNDVVEDSVVDLRSPELSILVELLPLSRVPNGSLVVAVSALP 343
           N  SLLDRNKCF +V +AVN VV+DSVVDLRSPELS+ VE+LPLS VPNGS+VVAVS LP
Sbjct: 200 N--SLLDRNKCFQIVGTAVNSVVKDSVVDLRSPELSVFVEVLPLSGVPNGSIVVAVSVLP 257

Query: 344 RNLVSTKPRLCVKALTSNTKEGSVAH 369
            NLVSTKPRL VKAL SNTKEGSVA 
Sbjct: 258 SNLVSTKPRLSVKALNSNTKEGSVAQ 283