Miyakogusa Predicted Gene

Lj5g3v2241250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2241250.1 tr|B7EG35|B7EG35_ORYSJ cDNA clone:J023010F18,
full insert sequence OS=Oryza sativa subsp. japonica
P,72,0.00000000001,no description,PSPTO4464-like domain;
DUF615,Ribosome-associated, YjgA; seg,NULL;
coiled-coil,NULL,CUFF.57018.1
         (297 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g112320.1 | DUF615 family protein | HC | chr1:50848301-508...   295   4e-80
Medtr1g112320.2 | DUF615 family protein | HC | chr1:50848301-508...   233   2e-61

>Medtr1g112320.1 | DUF615 family protein | HC |
           chr1:50848301-50843875 | 20130731
          Length = 296

 Score =  295 bits (755), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 168/299 (56%), Positives = 198/299 (66%), Gaps = 11/299 (3%)

Query: 1   MSLQ--VLRPLRQWPWLHLHHRGCANAAXXXXXXXXXXXXXP--SPPEPTRTTSNPHRFX 56
           MSL   V RPLR WPWL   H      +             P  SP E  +  S    F 
Sbjct: 1   MSLTQVVFRPLRHWPWLLHFHHHHHPTSSTKFSALYHHLLLPTSSPQESIKIRS----FS 56

Query: 57  XXXXXXXXXXXNVPQTTTELDSDSESK-KSRNELKREARRAVKWGMDLASFSAPQIKRVL 115
                      + P  T   + + ++  KSRN+LKREA+RAVKWGMDL+SFS PQIKR+L
Sbjct: 57  LSASRGKLRRADSPLPTAPEEEEEDAAIKSRNQLKREAKRAVKWGMDLSSFSPPQIKRIL 116

Query: 116 RVLSLDEVVFEALMVVKRLGPDVREGRRRQFSYIGKLLRGADPELMDRLIRATRDSDQKE 175
           RV+SLD++VFEALM+VKR+GPDVREGRRRQF+YIGKLLR  +PELMDRLI+AT+DSD KE
Sbjct: 117 RVVSLDQIVFEALMLVKRMGPDVREGRRRQFNYIGKLLRNVEPELMDRLIKATKDSDHKE 176

Query: 176 LQALTGLXXXXXXXXXXXXXXXXXXXXXXXN--LHDSQATRWFDGLINKDIQITNEVYSI 233
           LQALTGL                       +    DSQ TRWFDGLINKDIQITNEVYS+
Sbjct: 177 LQALTGLGPDDPEDDSENLVETEDEKDDEESKPYDDSQVTRWFDGLINKDIQITNEVYSV 236

Query: 234 QGVDFDRQELRKLVRRVHVAQERKADNEEDEKKIETAVIGAKKALTRFLRHVSKRIPDE 292
           QGV++DRQELRKLVR+VH AQE KA +E++EKKIE A I AKKALTRFLR +S+ I DE
Sbjct: 237 QGVEYDRQELRKLVRKVHFAQETKATDEDEEKKIEKAEIRAKKALTRFLRSLSENIVDE 295


>Medtr1g112320.2 | DUF615 family protein | HC |
           chr1:50848301-50844450 | 20130731
          Length = 267

 Score =  233 bits (594), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/271 (50%), Positives = 167/271 (61%), Gaps = 12/271 (4%)

Query: 1   MSLQ--VLRPLRQWPWLHLHHRGCANAAXXXXXXXXXXXXXP--SPPEPTRTTSNPHRFX 56
           MSL   V RPLR WPWL   H      +             P  SP E  +  S    F 
Sbjct: 1   MSLTQVVFRPLRHWPWLLHFHHHHHPTSSTKFSALYHHLLLPTSSPQESIKIRS----FS 56

Query: 57  XXXXXXXXXXXNVPQTTTELDSDSESK-KSRNELKREARRAVKWGMDLASFSAPQIKRVL 115
                      + P  T   + + ++  KSRN+LKREA+RAVKWGMDL+SFS PQIKR+L
Sbjct: 57  LSASRGKLRRADSPLPTAPEEEEEDAAIKSRNQLKREAKRAVKWGMDLSSFSPPQIKRIL 116

Query: 116 RVLSLDEVVFEALMVVKRLGPDVREGRRRQFSYIGKLLRGADPELMDRLIRATRDSDQKE 175
           RV+SLD++VFEALM+VKR+GPDVREGRRRQF+YIGKLLR  +PELMDRLI+AT+DSD KE
Sbjct: 117 RVVSLDQIVFEALMLVKRMGPDVREGRRRQFNYIGKLLRNVEPELMDRLIKATKDSDHKE 176

Query: 176 LQALTGLXXXXXXXXXXXXXXXXXXXXXXXN--LHDSQATRWFDGLINKDIQITNEVYSI 233
           LQALTGL                       +    DSQ TRWFDGLINKDIQITNEVYS+
Sbjct: 177 LQALTGLGPDDPEDDSENLVETEDEKDDEESKPYDDSQVTRWFDGLINKDIQITNEVYSV 236

Query: 234 QGVDFDRQELRKLVR-RVHVAQERKADNEED 263
           QGV++DRQ +  ++R RV       A +E+D
Sbjct: 237 QGVEYDRQVMFCIMRDRVTAYLHLLALSEQD 267