Miyakogusa Predicted Gene

Lj5g3v2240960.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2240960.1 Non Characterized Hit- tr|I1NFB9|I1NFB9_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55718 PE,92.38,0,no
description,Ribosomal protein S5 domain 2-type fold, subgroup; no
description,NULL; mevDPdecarb: ,CUFF.57017.1
         (420 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g112230.1 | mevalonate diphosphate decarboxylase | HC | ch...   749   0.0  

>Medtr1g112230.1 | mevalonate diphosphate decarboxylase | HC |
           chr1:50762009-50756473 | 20130731
          Length = 418

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/420 (85%), Positives = 379/420 (90%), Gaps = 2/420 (0%)

Query: 1   MAGESQNWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPNHLCTTTTVAVSP 60
           MAG+S  WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDP HLCTTTTV+VSP
Sbjct: 1   MAGDS--WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVSVSP 58

Query: 61  TFHQDRMWLNGKEIALSGGRFQSCLREIRARACDVDDKKKGVKITKEDWGKLHVHIASFN 120
           +F QDRMWLNGKEI+LSGGRFQSCLREIRARACDV+D KKG+KITKEDW KL+VHIAS+N
Sbjct: 59  SFQQDRMWLNGKEISLSGGRFQSCLREIRARACDVEDNKKGIKITKEDWSKLYVHIASYN 118

Query: 121 NFPTXXXXXXXXXXXXCLVYALGKLMNVKEDESQLSAIARQGSGSACRSLYGGFVKWIMG 180
           NFPT            CLVY+LGKLMNVKEDESQLSAIARQGSGSACRSL+GGFVKW MG
Sbjct: 119 NFPTAAGLASSAAGFACLVYSLGKLMNVKEDESQLSAIARQGSGSACRSLFGGFVKWKMG 178

Query: 181 KEENGSDSLAVQLADEKHWDDLVIVIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVV 240
           KEENGSDSLAVQLADEKHWD+LVIVIAVVSSRQKETSSTSGMRE+VETSLLLQHRAKE+V
Sbjct: 179 KEENGSDSLAVQLADEKHWDELVIVIAVVSSRQKETSSTSGMRETVETSLLLQHRAKEIV 238

Query: 241 PKRILQMEEAIRNRDFASFSKLTCTDSNQFHAVCLDTCPPIFYMNDTSHRIISIIEKWNR 300
           PKRILQMEEAIRNRDFASFS+LT  DSNQFHAVCLDT PPIFYMNDTSHRIISI+EKWNR
Sbjct: 239 PKRILQMEEAIRNRDFASFSQLTRIDSNQFHAVCLDTSPPIFYMNDTSHRIISIVEKWNR 298

Query: 301 SEEAPQVAYTFDAGPNAVXXXXXXXXXXXXXXXXXYYFPPNSDDLNSYIIGDKSIAKDAG 360
           SEEAPQVAYTFDAGPNAV                 YYFPPNSDDLNSYIIGDKSIAKDAG
Sbjct: 299 SEEAPQVAYTFDAGPNAVLIARNRKAATLLIQKLLYYFPPNSDDLNSYIIGDKSIAKDAG 358

Query: 361 INGISDVEALPPPPEIKDNIPSQKYKGDVNYFICTRPGRGPVLLSDENQALLNGENGLPK 420
           INGI D+EALPPPPEIKDNIPSQKYKGDV+YFICTRPGRGPV+L+DE+QALLN ENGLPK
Sbjct: 359 INGIEDIEALPPPPEIKDNIPSQKYKGDVSYFICTRPGRGPVVLTDESQALLNSENGLPK 418