Miyakogusa Predicted Gene

Lj5g3v2240790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2240790.1 tr|I1LF09|I1LF09_SOYBN Ribonuclease OS=Glycine
max GN=Gma.22030 PE=3 SV=1,84.62,0,no description,NULL; no
description,Ribonuclease HII, helix-loop-helix cap domain;
RIBONUCLEASE H2 S,CUFF.56989.1
         (206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g111980.1 | ribonuclease H2 subunit A-like protein | HC | ...   376   e-105

>Medtr1g111980.1 | ribonuclease H2 subunit A-like protein | HC |
           chr1:50635401-50639123 | 20130731
          Length = 298

 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/207 (86%), Positives = 195/207 (94%), Gaps = 1/207 (0%)

Query: 1   MLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYEVKLSKNFPSIKFVV 60
           MLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYE KLSKNFPSIKFVV
Sbjct: 92  MLKKNKINLNEISHDSAMGLVDRVLKMGVLLTEVYIDTVGDPGKYEAKLSKNFPSIKFVV 151

Query: 61  AKKADSLYPVVSGASIVAKVTRDQAIRQWVLEETAENMHRNFGSGYPGDPTTKSWLEHHK 120
           AKKADSLYPVVSGASIVAKVTRD+AIR WVL+E+A+N+HR FGSGYPGDP TKSWLE HK
Sbjct: 152 AKKADSLYPVVSGASIVAKVTRDRAIRDWVLDESADNIHRKFGSGYPGDPATKSWLEDHK 211

Query: 121 NSVFGFPTLVRFSWGTCTTYFKDGAEVLWEADKDEDEGGNNNSRKRQLKLSNVGFTTSK- 179
           +S+FGFPTLVRFSWGTC++YFK G EVLWE+D DED G NNN+ KRQLKL+N+GFTTSK 
Sbjct: 212 HSIFGFPTLVRFSWGTCSSYFKGGTEVLWESDLDEDGGSNNNNGKRQLKLNNLGFTTSKR 271

Query: 180 RSEEIESSGKGRSRFFQARKLEHLSHF 206
           R+EEIESSGKGRSRFFQARKLEHL+HF
Sbjct: 272 RTEEIESSGKGRSRFFQARKLEHLTHF 298