Miyakogusa Predicted Gene

Lj5g3v2224380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2224380.1 Non Characterized Hit- tr|I1N866|I1N866_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.67,0,SUBFAMILY NOT
NAMED,NULL; CCR4 NOT-RELATED,NULL;
NOT2_3_5,NOT2/NOT3/NOT5,CUFF.56965.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g085350.1 | transcription regulator NOT2/NOT3/NOT5 family ...   276   5e-75
Medtr7g085350.2 | transcription regulator NOT2/NOT3/NOT5 family ...   275   1e-74
Medtr4g061843.3 | CCR4-NOT transcription complex subunit 2 | HC ...    55   2e-08
Medtr4g061843.1 | CCR4-NOT transcription complex subunit 2 | HC ...    55   2e-08
Medtr4g061843.2 | CCR4-NOT transcription complex subunit 2 | HC ...    55   3e-08
Medtr2g096180.1 | CCR4-NOT transcription complex subunit 2 | HC ...    52   1e-07
Medtr2g096180.4 | CCR4-NOT transcription complex subunit 2 | HC ...    52   2e-07
Medtr2g096180.2 | CCR4-NOT transcription complex subunit 2 | HC ...    52   2e-07
Medtr2g096180.3 | CCR4-NOT transcription complex subunit 2 | HC ...    52   3e-07
Medtr4g061960.1 | CCR4-NOT transcription complex subunit 2 | HC ...    50   1e-06

>Medtr7g085350.1 | transcription regulator NOT2/NOT3/NOT5 family
           protein | HC | chr7:33041291-33054371 | 20130731
          Length = 901

 Score =  276 bits (706), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 131/149 (87%), Positives = 142/149 (95%)

Query: 1   MLEAAHHKIPLAKDSERPRTYTPRHPTITPSSYPQIQAPIVNNPAFWEKVGQEPFGTDTL 60
           MLEAAH ++P  +DSERPRTYTPRHP ITPSSYPQ+QAPIVNNPAFWE++G EPFGTDTL
Sbjct: 753 MLEAAHFRMPQPRDSERPRTYTPRHPAITPSSYPQVQAPIVNNPAFWERLGLEPFGTDTL 812

Query: 61  FFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHI 120
           FFAFYYQQNTYQQYLAA+ELKKQSWRYHRKY+TWFQRHEEPKVATD++E+GTYVYFDFHI
Sbjct: 813 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDDYEQGTYVYFDFHI 872

Query: 121 ANDDLQHGWCQRIKTGFTFEYNYLEDELV 149
           ANDDLQHGWCQRIK  FTFEYNYLEDELV
Sbjct: 873 ANDDLQHGWCQRIKNDFTFEYNYLEDELV 901


>Medtr7g085350.2 | transcription regulator NOT2/NOT3/NOT5 family
           protein | HC | chr7:33041286-33054371 | 20130731
          Length = 876

 Score =  275 bits (704), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 131/149 (87%), Positives = 142/149 (95%)

Query: 1   MLEAAHHKIPLAKDSERPRTYTPRHPTITPSSYPQIQAPIVNNPAFWEKVGQEPFGTDTL 60
           MLEAAH ++P  +DSERPRTYTPRHP ITPSSYPQ+QAPIVNNPAFWE++G EPFGTDTL
Sbjct: 728 MLEAAHFRMPQPRDSERPRTYTPRHPAITPSSYPQVQAPIVNNPAFWERLGLEPFGTDTL 787

Query: 61  FFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQRHEEPKVATDEFEEGTYVYFDFHI 120
           FFAFYYQQNTYQQYLAA+ELKKQSWRYHRKY+TWFQRHEEPKVATD++E+GTYVYFDFHI
Sbjct: 788 FFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDDYEQGTYVYFDFHI 847

Query: 121 ANDDLQHGWCQRIKTGFTFEYNYLEDELV 149
           ANDDLQHGWCQRIK  FTFEYNYLEDELV
Sbjct: 848 ANDDLQHGWCQRIKNDFTFEYNYLEDELV 876


>Medtr4g061843.3 | CCR4-NOT transcription complex subunit 2 | HC |
           chr4:22912417-22920114 | 20130731
          Length = 624

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 30  PSSYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHR 89
           P  Y   Q P ++   F        F  +TLF+ FY       Q  AA EL  + W YH+
Sbjct: 513 PQCYFTEQPPALHQGYF------SKFSVETLFYIFYSMPKDKAQLYAANELNNRGWWYHK 566

Query: 90  KYHTWFQR--HEEPKVATDEFEEGTYVYFD 117
           +Y  WF+R  + E  V T  +E GT+  FD
Sbjct: 567 EYRLWFKRAPNMELLVQTSTYERGTFHCFD 596


>Medtr4g061843.1 | CCR4-NOT transcription complex subunit 2 | HC |
           chr4:22912417-22920126 | 20130731
          Length = 657

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 30  PSSYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHR 89
           P  Y   Q P ++   F        F  +TLF+ FY       Q  AA EL  + W YH+
Sbjct: 546 PQCYFTEQPPALHQGYF------SKFSVETLFYIFYSMPKDKAQLYAANELNNRGWWYHK 599

Query: 90  KYHTWFQR--HEEPKVATDEFEEGTYVYFD 117
           +Y  WF+R  + E  V T  +E GT+  FD
Sbjct: 600 EYRLWFKRAPNMELLVQTSTYERGTFHCFD 629


>Medtr4g061843.2 | CCR4-NOT transcription complex subunit 2 | HC |
           chr4:22912477-22919800 | 20130731
          Length = 598

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 30  PSSYPQIQAPIVNNPAFWEKVGQEPFGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHR 89
           P  Y   Q P ++   F        F  +TLF+ FY       Q  AA EL  + W YH+
Sbjct: 487 PQCYFTEQPPALHQGYF------SKFSVETLFYIFYSMPKDKAQLYAANELNNRGWWYHK 540

Query: 90  KYHTWFQR--HEEPKVATDEFEEGTYVYFD 117
           +Y  WF+R  + E  V T  +E GT+  FD
Sbjct: 541 EYRLWFKRAPNMELLVQTSTYERGTFHCFD 570


>Medtr2g096180.1 | CCR4-NOT transcription complex subunit 2 | HC |
           chr2:41057795-41063834 | 20130731
          Length = 658

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 55  FGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQR--HEEPKVATDEFEEGT 112
           F  +TLF+ FY       Q  AA EL K+ W YH+++  W+ +  + EP V T  +E G+
Sbjct: 566 FTLETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRMWYIKVPNMEPLVKTSTYERGS 625

Query: 113 YVYFD 117
           Y  FD
Sbjct: 626 YHCFD 630


>Medtr2g096180.4 | CCR4-NOT transcription complex subunit 2 | HC |
           chr2:41057810-41063663 | 20130731
          Length = 609

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 55  FGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQR--HEEPKVATDEFEEGT 112
           F  +TLF+ FY       Q  AA EL K+ W YH+++  W+ +  + EP V T  +E G+
Sbjct: 517 FTLETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRMWYIKVPNMEPLVKTSTYERGS 576

Query: 113 YVYFD 117
           Y  FD
Sbjct: 577 YHCFD 581


>Medtr2g096180.2 | CCR4-NOT transcription complex subunit 2 | HC |
           chr2:41057795-41063834 | 20130731
          Length = 620

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 55  FGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQR--HEEPKVATDEFEEGT 112
           F  +TLF+ FY       Q  AA EL K+ W YH+++  W+ +  + EP V T  +E G+
Sbjct: 528 FTLETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRMWYIKVPNMEPLVKTSTYERGS 587

Query: 113 YVYFD 117
           Y  FD
Sbjct: 588 YHCFD 592


>Medtr2g096180.3 | CCR4-NOT transcription complex subunit 2 | HC |
           chr2:41057810-41063663 | 20130731
          Length = 571

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 55  FGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQR--HEEPKVATDEFEEGT 112
           F  +TLF+ FY       Q  AA EL K+ W YH+++  W+ +  + EP V T  +E G+
Sbjct: 479 FTLETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRMWYIKVPNMEPLVKTSTYERGS 538

Query: 113 YVYFD 117
           Y  FD
Sbjct: 539 YHCFD 543


>Medtr4g061960.1 | CCR4-NOT transcription complex subunit 2 | HC |
           chr4:22973895-22971677 | 20130731
          Length = 333

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 55  FGTDTLFFAFYYQQNTYQQYLAARELKKQSWRYHRKYHTWFQR--HEEPKVATDEFEEGT 112
           F  +TLF+ FY       Q  AA EL  + W YH++Y  WF+R  + E  V T  +E GT
Sbjct: 241 FSVETLFYIFYSMPKDKAQLYAANELNNRGWWYHKEYRLWFKRAPNMELLVQTSTYERGT 300

Query: 113 YVYFD 117
           +  FD
Sbjct: 301 FHCFD 305