Miyakogusa Predicted Gene
- Lj5g3v2219240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2219240.1 tr|B6TA69|B6TA69_MAIZE Glycine-rich RNA-binding
protein 7 OS=Zea mays PE=2 SV=1,41.03,2e-18,RNA-binding domain,
RBD,NULL; RRM,RNA recognition motif domain; ZF_CCHC,Zinc finger,
CCHC-type; PRED,CUFF.56943.1
(284 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 92 6e-19
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 91 1e-18
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 91 2e-18
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 90 3e-18
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 1e-15
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 1e-15
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 5e-15
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 2e-14
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 75 7e-14
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 7e-14
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 74 1e-13
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 1e-13
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 1e-13
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 74 2e-13
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 2e-13
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 2e-13
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 2e-13
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 4e-13
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 4e-13
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 8e-13
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 71 1e-12
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 71 1e-12
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 1e-12
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 3e-12
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 69 4e-12
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 69 6e-12
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 8e-12
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 9e-12
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 9e-12
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 9e-12
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 2e-11
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 2e-11
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 2e-11
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 2e-11
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 4e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 6e-11
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 7e-11
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 64 2e-10
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 62 6e-10
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 62 6e-10
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 62 7e-10
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 7e-10
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 7e-10
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 7e-10
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 8e-10
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 8e-10
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 8e-10
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 9e-10
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 61 1e-09
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 61 1e-09
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 60 3e-09
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-09
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 59 4e-09
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 6e-09
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 7e-09
Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 8e-09
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 9e-09
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 57 3e-08
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 56 3e-08
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 56 3e-08
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 56 3e-08
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 56 3e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 56 5e-08
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 6e-08
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 7e-08
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 8e-08
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 9e-08
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 55 9e-08
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 55 9e-08
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 9e-08
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 9e-08
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 1e-07
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 55 1e-07
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 54 1e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 54 1e-07
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 54 1e-07
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-07
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 54 2e-07
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 54 2e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 54 2e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 54 2e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 54 2e-07
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 54 2e-07
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 53 3e-07
Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC | c... 53 4e-07
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 52 5e-07
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 52 5e-07
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 52 6e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 52 6e-07
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 52 7e-07
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 52 8e-07
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 52 8e-07
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 52 8e-07
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 52 8e-07
Medtr6g048060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr0022s0360.1 | RNA-binding (RRM/RBD/RNP motif) family protei... 51 1e-06
Medtr0022s0360.2 | RNA-binding (RRM/RBD/RNP motif) family protei... 51 1e-06
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 51 1e-06
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 1e-06
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 51 2e-06
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 50 2e-06
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 50 3e-06
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 50 3e-06
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 49 5e-06
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 49 5e-06
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 62/84 (73%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
+S E R FVGGL+W + LE AF ++G+I + +++ +R+TGR RGFGF+TFA+ + M
Sbjct: 3 SSDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSM 62
Query: 62 EDAIKEMHGREIGDRIISVNKAQP 85
DAI+EM+G++I R I+VN+AQ
Sbjct: 63 RDAIEEMNGQDIDGRNITVNEAQS 86
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 1 MASKE-ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRR 59
MAS + E R FVGGL+W LE AF +YG+I++ +I+ +R+TGR RGFGF+TFAD +
Sbjct: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
Query: 60 GMEDAIKEMHGREIGDRIISVNKAQP 85
M DAI+ M+G+++ R I+VN+AQ
Sbjct: 61 SMRDAIEGMNGQDMDGRNITVNEAQS 86
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 59/80 (73%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
E R FVGGL+W LE AF +YG+I++ +I+ +R+TGR RGFGF+TFA+ + M DAI
Sbjct: 5 EYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAI 64
Query: 66 KEMHGREIGDRIISVNKAQP 85
+ M+G+++ R I+VN+AQ
Sbjct: 65 EAMNGQDLDGRNITVNQAQS 84
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 59/79 (74%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
E R FVGGL+W LE AF +YG+I++ +I+ +R+TGR RGFGF+TFA+ + M DAI
Sbjct: 5 EYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAI 64
Query: 66 KEMHGREIGDRIISVNKAQ 84
+ M+G+++ R I+VN+AQ
Sbjct: 65 EAMNGQDLDGRNITVNQAQ 83
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+S+ E L AF RYG +L+ +I+M+RDTGR RGFGFITFA A++
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 68 MHGREIGDRIISVNKAQPK 86
M +E+ R + VN A +
Sbjct: 101 MDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+S+ E L AF RYG +L+ +I+M+RDTGR RGFGFITFA A++
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 68 MHGREIGDRIISVNKAQPK 86
M +E+ R + VN A +
Sbjct: 101 MDNKELDGRTVRVNYATER 119
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M S ++F+GG+S+ E L AF RYG++L+ +I+M+R+TGR RGFGFITF
Sbjct: 36 MCSAPTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEE 95
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPK 86
AI+ + G+++ R + VN A +
Sbjct: 96 ASSAIQALDGQDLHGRRVRVNYANER 121
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
+S ++FVGG+S++ E+ L AF +YG++L+ +I+M+R++GR +GFGF+T+
Sbjct: 38 FSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEE 97
Query: 61 MEDAIKEMHGREIGDRIISVNKAQ 84
AI+ + G+++ R + VN A
Sbjct: 98 ASSAIQALDGQDLYGRRVGVNFAN 121
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
+S ++FVGG+S++ E+ L AF +YG++L+ +I+M+R++GR +GFGF+T+
Sbjct: 38 FSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEE 97
Query: 61 MEDAIKEMHGREIGDRIISVNKAQ 84
AI+ + G+++ R + VN A
Sbjct: 98 ASSAIQALDGQDLYGRRVGVNFAN 121
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
RI+V L+W+V +LE F +GKI+ +++ +R+TGR RGFGF+T +D M DAI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 68 MHGREIGDRIISVNKAQ 84
+ G+ + R I V+ A+
Sbjct: 267 LDGQSLEGRTIRVSVAE 283
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E+ ++FVG +DV +L F + G + +++ R T RGFGF+T + E A
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+++ +G + R + VNKA PK
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPK 188
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 54/78 (69%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FVGGLS+ TE+ L AF YG+++E +++ +R + + +G+GF+TFA + E AI E
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 68 MHGREIGDRIISVNKAQP 85
M+ + + R++ V+ A+P
Sbjct: 93 MNEKALNGRVVFVDYAKP 110
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IF+GGL+ D T + F+RYG+I + IM +R TGRPRGFGFIT+AD ++ I+E
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 68 MHGREIGDRIISVNKAQPK 86
H I D+ + + + PK
Sbjct: 79 NH--IINDKQVEIKRTIPK 95
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGG+ V+E +L+ F ++G ++E +I+ + T R RGFGF+ F + +++ + +
Sbjct: 107 KIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLAD 166
Query: 68 MHGREIGDRIISVNKAQPK 86
+ ++ D + + KA+PK
Sbjct: 167 GNMIDMDDTQVEIKKAEPK 185
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 45/65 (69%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ ++F+GG+SWD E +L+ F YG +L +M E++TG+PRGFGF+ F+D ++
Sbjct: 4 DQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRV 63
Query: 65 IKEMH 69
+++ H
Sbjct: 64 LEDKH 68
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL + E + F+ YG + + +M +++TGRPRGFGFITF ++ + K
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 67 EMHGREIGDRIISVNKAQPK 86
H ++ + + V +A PK
Sbjct: 173 TFH--DLNGKQVEVKRALPK 190
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 45/65 (69%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ ++F+GG+SWD E +L+ F YG +L +M E++TG+PRGFGF+ F+D ++
Sbjct: 4 DQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRV 63
Query: 65 IKEMH 69
+++ H
Sbjct: 64 LEDKH 68
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL + E + F+ YG + + +M +++TGRPRGFGFITF ++ + K
Sbjct: 113 KIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHK 172
Query: 67 EMHGREIGDRIISVNKAQPK 86
H ++ + + V +A PK
Sbjct: 173 TFH--DLNGKQVEVKRALPK 190
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R +VG L WDV LE F +GK+ Q++ +R+TGR RGFGF+T ++ M DAI
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 68 MHGREIGDRIISVNKAQ 84
+ G+ R I VN A+
Sbjct: 277 LDGQSFNGRAIRVNVAE 293
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E+ +IFVG L +DV +L F++ G + +++ RDT R RGFGF+T + +E A
Sbjct: 120 EDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERA 179
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ + G E+ R+++VNKA P+
Sbjct: 180 VNKFSGFELDGRLLTVNKAAPR 201
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L F +G ++E IM +R TGR RGFGF+ FAD E + E
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 65 KH--VIDGRTVEAKKAVPR 81
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL+ VTE ++ FD++G I + +M + +T RPRGFGFIT+ +E + K
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 167 TFH--ELNGKMVEVKRAVPK 184
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L F +G ++E IM +R TGR RGFGF+ FAD E + E
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 65 KH--VIDGRTVEAKKAVPR 81
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL+ VTE ++ FD++G I + +M + +T RPRGFGFIT+ +E + K
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 167 TFH--ELNGKMVEVKRAVPK 184
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L F +G ++E IM +R TGR RGFGF+ FAD E + E
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 65 KH--VIDGRTVEAKKAVPR 81
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL+ VTE ++ FD++G I + +M + +T RPRGFGFIT+ +E + K
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 166
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 167 TFH--ELNGKMVEVKRAVPK 184
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
+ ++F+GG+SWD E +L F YG++ E IM +R TGR RGFGF+ F D +
Sbjct: 3 SDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADI 62
Query: 64 AIKEMHGREIGDRIISVNKAQPK 86
++E H I R++ KA P+
Sbjct: 63 VVQEKH--NIDGRMVEAKKAVPR 83
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA-IK 66
+IFVGGL+ VTE + FD++G I + +M + +T RPRGFGFIT+ ++ +K
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 167 TFH--ELNGKMVEVKRAVPK 184
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
+ ++F+GG+SWD E +L F YG++ E IM +R TGR RGFGF+ F D +
Sbjct: 3 SDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADI 62
Query: 64 AIKEMHGREIGDRIISVNKAQPK 86
++E H I R++ KA P+
Sbjct: 63 VVQEKH--NIDGRMVEAKKAVPR 83
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA-IK 66
+IFVGGL+ VTE + FD++G I + +M + +T RPRGFGFIT+ ++ +K
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 167 TFH--ELNGKMVEVKRAVPK 184
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 8/94 (8%)
Query: 1 MASKEENRIFVGGL--------SWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGF 52
M S ++F+GG+ S+ E L AF RYG++L+ +I+M+R+TGR RGFGF
Sbjct: 36 MCSAPTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGF 95
Query: 53 ITFADRRGMEDAIKEMHGREIGDRIISVNKAQPK 86
ITF AI+ + G+++ R + VN A +
Sbjct: 96 ITFNSVEEASSAIQALDGQDLHGRRVRVNYANER 129
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
N++FVGGLSW V E+ L+ AF +G + E +I+ ++D+GR RGFGF+ F++ + A
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 67 EMHGREIGDRIISVNKAQPK 86
M G+ + R + +N A K
Sbjct: 96 AMDGKALLGRPLRINFALEK 115
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L+ F YG+++E IM +R TGR RGFGF+ F+D E I +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 67 KH--IIDGRTVEAKKAVPR 83
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL +TE + FD++G I + +M + +T RPRGFGFIT+ ++ + K
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYK 166
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 167 TFH--ELNGKMVEVKRAVPK 184
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+GG+SWD E +L+ F YG+++E IM +R TGR RGFGF+ F+D E I +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + KA P+
Sbjct: 67 KH--IIDGRTVEAKKAVPR 83
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL +TE + FD++G I + +M + +T RPRGFGFIT+ ++ + K
Sbjct: 107 KIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYK 166
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 167 TFH--ELNGKMVEVKRAVPK 184
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI-K 66
+IFVGGL+ VTE ++ FD++G I + +M + +T RPRGFGFIT+ +E + K
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHK 96
Query: 67 EMHGREIGDRIISVNKAQPK 86
H E+ +++ V +A PK
Sbjct: 97 TFH--ELNGKMVEVKRAVPK 114
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FVGG+S + TE L+H F +YG +L I +R T PRGFGF+TF+D +A+++
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 68 MHGREIGDRIISVNKAQPK 86
H I R + V KA P+
Sbjct: 71 THA--ILGRKVEVRKAIPR 87
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGGL +++ + + F+R+G+I + +M + T RPRGFGFITF ED+++
Sbjct: 118 KIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDS----EDSVQS 173
Query: 68 MHGREIGD---RIISVNKAQPKMG 88
+ R D R + V +A P+ G
Sbjct: 174 VMMRSFHDLNGRQVEVKRAVPREG 197
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
RI+V L+W+V +LE F +GKI+ +++ +R+TGR RGFGF+T +D M DAI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 68 MHGR 71
+ G+
Sbjct: 267 LDGQ 270
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E+ ++FVG +DV +L F + G + +++ R T RGFGF+T + E A
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+++ +G + R + VNKA PK
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPK 188
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
+S +NR+ VG L+W V LE F G++LE +++ +R++GR RGFGF+TF+ +
Sbjct: 191 SSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEV 250
Query: 62 EDAIKEMHGREIGDRIISVNKA 83
+ AI+ + G ++ R I V+ A
Sbjct: 251 DSAIRTLDGADLNGRAIRVSPA 272
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R+FVG L + V QL F+ G + +++ ++ TGR RGFGF+T + +E A ++
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 68 MHGREIGDRIISVNKAQP 85
++G + R + VN P
Sbjct: 145 LNGYVVDGRELRVNAGPP 162
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
+S +NR+ VG L+W V LE F G++LE +++ +R++GR RGFGF+TF+ +
Sbjct: 191 SSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEV 250
Query: 62 EDAIKEMHGREIGDRIISVNKA 83
+ AI+ + G ++ R I V+ A
Sbjct: 251 DSAIRTLDGADLNGRAIRVSPA 272
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R+FVG L + V QL F+ G + +++ ++ TGR RGFGF+T + +E A ++
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 68 MHGREIGDRIISVNKAQP 85
++G + R + VN P
Sbjct: 145 LNGYVVDGRELRVNAGPP 162
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R++V GLS+ TE L +AF +G++++ ++M++ RPRGF F+ +A + AI+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 68 MHGREIGDRIISVNKAQPK 86
MHG+ + R+I V A+P+
Sbjct: 156 MHGKFLDGRVIFVEVAKPR 174
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E+ ++ V G+ WDV L+ +YG++ +C +M ER TGR RGFG++TFA ++DA
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFAS---VDDA 58
Query: 65 IKEMHGREI-GDRIISVNKAQPK 86
+ + G + GDR++ V A PK
Sbjct: 59 KEVLSGEHVLGDRMLEVKVATPK 81
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
+K+ RIFV + VTE F++YG I + + ++ + RG GFITF + +E
Sbjct: 88 AKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVE 147
Query: 63 DAIKEMHGREIGDRIISVNKAQPK 86
+ + E H E+G + V++A PK
Sbjct: 148 NLMSETH--ELGGSAVVVDRATPK 169
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E+ ++ V G+ WDV L+ +YG++ +C +M ER TGR RGFG++TFA ++DA
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFAS---VDDA 58
Query: 65 IKEMHGREI-GDRIISVNKAQPK 86
+ + G + GDR++ V A PK
Sbjct: 59 KEVLSGEHVLGDRMLEVKVATPK 81
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
+K+ RIFV + VTE F++YG I + + ++ + RG GFITF + +E
Sbjct: 88 AKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVE 147
Query: 63 DAIKEMHGREIGDRIISVNKAQPK 86
+ + E H E+G + V++A PK
Sbjct: 148 NLMSETH--ELGGSAVVVDRATPK 169
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E+ ++ V G+ WDV L+ +YG++ +C +M ER TGR RGFG++TFA ++DA
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFAS---VDDA 58
Query: 65 IKEMHGREI-GDRIISVNKAQPK 86
+ + G + GDR++ V A PK
Sbjct: 59 KEVLSGEHVLGDRMLEVKVATPK 81
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
+K+ RIFV + VTE F++YG I + + ++ + RG GFITF + +E
Sbjct: 88 AKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVE 147
Query: 63 DAIKEMHGREIGDRIISVNKAQPK 86
+ + E H E+G + V++A PK
Sbjct: 148 NLMSETH--ELGGSAVVVDRATPK 169
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
E+ ++ V G+ WDV L+ +YG++ +C +M ER TGR RGFG++TFA ++DA
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFAS---VDDA 58
Query: 65 IKEMHGREI-GDRIISVNKAQPK 86
+ + G + GDR++ V A PK
Sbjct: 59 KEVLSGEHVLGDRMLEVKVATPK 81
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
+K+ RIFV + VTE F++YG I + + ++ + RG GFITF + +E
Sbjct: 88 AKKVTRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVE 147
Query: 63 DAIKEMHGREIGDRIISVNKAQPK 86
+ + E H E+G + V++A PK
Sbjct: 148 NLMSETH--ELGGSAVVVDRATPK 169
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 52/84 (61%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
S +++VGG+S+ + L +F RYG +L+ +++++R+ GR +GFGF+TFA
Sbjct: 36 SMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEAS 95
Query: 63 DAIKEMHGREIGDRIISVNKAQPK 86
A++ M +E+ R + VN AQ +
Sbjct: 96 AALQAMDNQELHGRTVRVNYAQER 119
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADR---- 58
S +F+GG+S++ + F YGK+L+ +I+ +R+TGRPRGFGF+TFA
Sbjct: 30 SMSSANLFLGGISYNTLRKH----FSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEAS 85
Query: 59 ---RGMEDAIKEMHGREIGDRIISVNKAQPKMG 88
+ M AIK M +++ R + VN A K G
Sbjct: 86 AALQTMSLAIKSMKNQDLYGRKVRVNYATEKSG 118
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
+ E ++FVG L+W VT L AF +G ++ +++ + +TG+ RG+GF+++A + M+
Sbjct: 201 ETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDT 260
Query: 64 AIKEMHGREIGDRIISVNKAQPK 86
A+ M E+ R + V+ AQ K
Sbjct: 261 ALAIMDNVELEGRTLRVSLAQGK 283
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD T L +AF +YG+I +C+ + ++ +G+ +G+GFI F R G +A+KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 68 MHGREIGDRIISVNKA 83
++IG+R+ + A
Sbjct: 188 PQ-KKIGNRMTACQLA 202
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD T L +AF +YG+I +C+ + ++ +G+ +G+GFI F R G +A+KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 68 MHGREIGDRIISVNKA 83
++IG+R+ + A
Sbjct: 188 PQ-KKIGNRMTACQLA 202
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD T L +AF +YG+I +C+ + ++ +G+ +G+GFI F R G +A+KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 68 MHGREIGDRIISVNKA 83
++IG+R+ + A
Sbjct: 188 PQ-KKIGNRMTACQLA 202
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD T L +AF +YG+I +C+ + ++ +G+ +G+GFI F R G +A+KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 68 MHGREIGDRIISVNKA 83
++IG+R+ + A
Sbjct: 188 PQ-KKIGNRMTACQLA 202
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD T L +AF +YG+I +C+ + ++ +G+ +G+GFI F R G +A+KE
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Query: 68 MHGREIGDRIISVNKA 83
++IG+R+ + A
Sbjct: 188 PQ-KKIGNRMTACQLA 202
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+++F+GGLS++V ++ L AF YG ++E +++ +R+TGR RGFGF+ F A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ M G+++ R I V+ A +
Sbjct: 94 LS-MDGQDLNGRNIRVSYANDR 114
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFVGG+ +VTE + F RYG++ + QIM + T R RGFGF+TF ++D +
Sbjct: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSM 193
Query: 68 MHGREIGDRIISVNKAQPK 86
+ E + + KA+PK
Sbjct: 194 GNKIEFAGTQVEIKKAEPK 212
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IF+GGL+ + T Q F +YG+I + IM +R TG+PRGFGFIT+AD ++ I++
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 68 MHGREIGDRIISVNKAQPK 86
H I + + + + P+
Sbjct: 106 SH--IINSKQVEIKRTIPR 122
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 53/86 (61%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M+ + ++FV LS+ T++QLE F +G + E ++ +++T RP+GFGF+++
Sbjct: 1 MSQRIGTKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIE 60
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPK 86
E A K ++GR + R+I V A+PK
Sbjct: 61 AEKARKALNGRIVDGRLIFVEHAKPK 86
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+I+ G L W + + L AFD +L +I+ ERD GR RGFGF+TF +E A+
Sbjct: 213 KIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNA 272
Query: 68 MHGREIGDRIISVNKA 83
M+G E+ R + +N A
Sbjct: 273 MNGVEVQGRPLRLNLA 288
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R++VG L + +T QL F G ++ +I+ +R T R RGF F+T ++AI+
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 68 MHGREIGDRIISVNKAQPKMGGD 90
G ++G R VN + GG+
Sbjct: 170 FDGSQVGGRSAKVNFPEVPKGGE 192
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+FVG LS +VT+ L F Y + ++M + TGR +G+GF++F D + + AI +
Sbjct: 146 NVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIND 205
Query: 68 MHGREIGDRIISVNKAQPKMGGDDADQ 94
M G+ +G+R I N A GG ++
Sbjct: 206 MTGKWLGNRQIRCNWATKGAGGSSNEE 232
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+FVG LS +VT+ L F Y + ++M + TGR +G+GF++F D + + AI +
Sbjct: 146 NVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIND 205
Query: 68 MHGREIGDRIISVNKAQPKMGGDDADQ 94
M G+ +G+R I N A GG ++
Sbjct: 206 MTGKWLGNRQIRCNWATKGAGGSSNEE 232
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+FVG LS +VT+ L F Y + ++M + TGR +G+GF++F D + + AI +
Sbjct: 130 NVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAIND 189
Query: 68 MHGREIGDRIISVNKAQPKMGGDDADQ 94
M G+ +G+R I N A GG ++
Sbjct: 190 MTGKWLGNRQIRCNWATKGAGGSSNEE 216
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD T L F +YG+I +C+ + ++ +G+ +G+ FI F R G A+K+
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 68 MHGREIGDRIISVNKA 83
+ IG+R S A
Sbjct: 226 PQ-KVIGNRTTSCQLA 240
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD T L F +YG+I +C+ + ++ +G+ +G+ FI F R G A+K+
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 68 MHGREIGDRIISVNKA 83
+ IG+R S A
Sbjct: 226 PQ-KVIGNRTTSCQLA 240
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+IFV GL WD T L F +YG+I +C+ + ++ +G+ +G+ FI F R G A+K+
Sbjct: 166 KIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQ 225
Query: 68 MHGREIGDRIISVNKA 83
+ IG+R S A
Sbjct: 226 PQ-KVIGNRTTSCQLA 240
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD----RRGME 62
++FVGGL+W+ + L F++YG ILE I+ ++ TGR +G+GF+TF D ++ E
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
Query: 63 DAIKEMHGREIGDRIISV 80
+ ++GR I S+
Sbjct: 78 EPTVIINGRRANCNIASL 95
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD----RRGME 62
++FVGGL+W+ ++ F+++G ILE I+ +++TG+ +G+GF+TF D RR
Sbjct: 16 TKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACA 75
Query: 63 DAIKEMHGREIGDRIISV 80
D + GR I S+
Sbjct: 76 DPNPVIDGRRANCNIASL 93
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ + ++ F+++G+ILE ++ ++ TGR +G+GF+TF A R
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACV 75
Query: 63 DAIKEMHGREIGDRIISV-----NKAQPKMGG 89
DA + GR + S+ + PK GG
Sbjct: 76 DAAPIIDGRRANCNLASLGVQRSKPSTPKHGG 107
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD----RRGME 62
++FVGGL+W+ + L F++YG ILE I+ ++ TGR +G+GF+TF D ++ E
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
Query: 63 DAIKEMHGREIGDRIISV 80
+ ++GR I S+
Sbjct: 78 EPTVIINGRRANCNIASL 95
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+IF+ GL TE L F +G++ + ++++++ TG+ GF +I F + + A K
Sbjct: 71 TKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAAK 130
Query: 67 EMHGREIGDRIISVNKAQP 85
EM+G+ R I V A+P
Sbjct: 131 EMNGKLFYGRFIYVTIAKP 149
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 9/92 (9%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ + ++ F+++G+ILE ++ ++ TGR +G+GF+TF A R
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACV 75
Query: 63 DAIKEMHGREIGDRIISV-----NKAQPKMGG 89
DA + GR + S+ + PK GG
Sbjct: 76 DAAPIIDGRRANCNLASLGVQRSKPSTPKHGG 107
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R++V GLS+ TE L +AF +G++++ ++M++ RPRGF F+ +A + AI+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 68 MHGREIGD 75
MHG+ IG+
Sbjct: 156 MHGK-IGN 162
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 53/83 (63%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
AS + ++FV GLS+ +E+ L AF+ +G+++E ++++++ + R +G+ FI +
Sbjct: 187 ASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAA 246
Query: 62 EDAIKEMHGREIGDRIISVNKAQ 84
A+KEM+G+ I +I V+ A+
Sbjct: 247 SAALKEMNGKIINGWMIVVDVAK 269
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M ++N ++VGGL+ +V E L AF +G I + + +++ T + R FGF+TF +R
Sbjct: 4 MQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLERED 63
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPK 86
A+ M G E+ R+++VN A P+
Sbjct: 64 ASAAMDNMDGAELYGRVLTVNYALPE 89
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
IFVG LS +VT+ L F Y + ++M ++ TGR RGFGF++F ++ + AI ++
Sbjct: 149 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 208
Query: 69 HGREIGDRIISVNKAQPKMGGDDADQ 94
G+ +G R I N A GG + Q
Sbjct: 209 TGKWLGSRQIRCNWATKGAGGIEEKQ 234
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+++F+GGLS++V ++ L AF YG ++E +++ +R+TGR RGFGF+ F A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 65 IKEMHGREI 73
+ M G+ +
Sbjct: 94 LS-MDGQVV 101
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD 57
+IFVGGL+W+ L+ FD++G ILE ++ +R TG+ +G+GF+TF D
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKD 76
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD 57
+IFVGGL+W+ L+ FD++G ILE ++ +R TG+ +G+GF+TF D
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKD 76
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD 57
+IFVGGL+W+ L+ FD++G ILE ++ +R TG+ +G+GF+TF D
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKD 76
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD 57
+IFVGGL+W+ L+ FD++G ILE ++ +R TG+ +G+GF+TF D
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKD 76
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG LS +VT+ L F Y + ++M ++ TGR RGFGF++F +++ + AI +
Sbjct: 132 HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAIND 191
Query: 68 MHGREIGDRIISVNKA 83
+ G+ +G R I N A
Sbjct: 192 LTGKWLGSRQIRCNWA 207
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ + F+++G ILE ++ +++TGR +G+GF+TF A RR
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
Query: 63 DAIKEMHGR 71
D + GR
Sbjct: 89 DPSPVIDGR 97
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
S + R+FVG L + ++ QL F G ++ +I+ + T R RGF F+T + E
Sbjct: 104 STQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAE 163
Query: 63 DAIKEMHGREIGDRIISVNKAQPKMGG 89
+AI+ G +G R I VN + + G
Sbjct: 164 EAIRMFDGTTVGGRAIKVNFPEVPIVG 190
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
++I+ G L WD+T + L AF + +L +++ ER+ G+ RG+GF++F +E A+
Sbjct: 207 HKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALS 266
Query: 67 EMHGREIGDRIISVNKA 83
M+G E+ R + + A
Sbjct: 267 AMNGVEVQGRPLRLKLA 283
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 3 SKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGME 62
S + R+FVG L + ++ QL F G ++ +I+ + T R RGF F+T + E
Sbjct: 104 STQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAE 163
Query: 63 DAIKEMHGREIGDRIISVNKAQPKMGG 89
+AI+ G +G R I VN + + G
Sbjct: 164 EAIRMFDGTTVGGRAIKVNFPEVPIVG 190
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
++I+ G L WD+T + L AF + +L +++ ER+ G+ RG+GF++F +E A+
Sbjct: 207 HKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALS 266
Query: 67 EMHGREIGDRIISVNKA 83
M+G E+ R + + A
Sbjct: 267 AMNGVEVQGRPLRLKLA 283
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 47/73 (64%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+FVGG+ +D TE + F +YG++++ ++ ++ TG+ +GF FI + D+R A+ +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 69 HGREIGDRIISVN 81
+G ++ RII V+
Sbjct: 98 NGAQVSGRIIRVD 110
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITF----ADRRGME 62
++FVGGL+W+ + F+++G ILE ++ +++TGR +G+GF+TF A RR
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
Query: 63 DAIKEMHGR 71
D + GR
Sbjct: 89 DPSPVIDGR 97
>Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:46512527-46508373 | 20130731
Length = 428
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M +++ I+VGGL + T+ + F+ YG IL+ +I+ ++ T + + F+TF + R
Sbjct: 1 MTLDDDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTI-GKCYCFVTFTNPRS 59
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPKMGG 89
DAI +M+GR I R++ VN + + GG
Sbjct: 60 AIDAINDMNGRTINGRVVKVNGVKSRGGG 88
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
++IFV GL++ TE +L AF +YG +++ I++ + R +GFG++TFA+ A
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 67 EMHGREIGDRIISVNKAQP 85
M+G+ + R++ V+ P
Sbjct: 92 GMNGKILHGRVLYVDMDPP 110
>Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:46512521-46508373 | 20130731
Length = 561
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
M +++ I+VGGL + T+ + F+ YG IL+ +I+ ++ T + + F+TF + R
Sbjct: 1 MTLDDDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTI-GKCYCFVTFTNPRS 59
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPKMGG 89
DAI +M+GR I R++ VN + + GG
Sbjct: 60 AIDAINDMNGRTINGRVVKVNGVKSRGGG 88
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
R+F G L +V + L AF R+ +++ ++ TG+ +G+GFI+FA+ + A+KE
Sbjct: 133 RLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKE 192
Query: 68 MHGREIGDRIISVNKAQ 84
M+G+ +G+R I + K++
Sbjct: 193 MNGKYVGNRPIKLRKSK 209
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD 57
++FVGGL+W+ + F+++G+ILE ++ ++ TGR +G+GF+TF D
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKD 75
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 36/51 (70%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFAD 57
++FVGGL+W+ + F+++G+ILE ++ ++ TGR +G+GF+TF D
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKD 75
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
++F+ GLS++ E L F+++G+I+E +++ TG +G+GF+ F A K
Sbjct: 33 TKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARK 92
Query: 67 EMHGREIGDRIISVNKAQ 84
E+HG+ + R I V A
Sbjct: 93 ELHGQIVDGRRIRVGYAH 110
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 ASKEENR-IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
A + ++R +FVG + +D TE QL+ G ++ +++ +R+TG+P+G+GF + D
Sbjct: 23 APQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEET 82
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPKMGGD 90
A + + G EI R + V+ A+ G D
Sbjct: 83 ALSARRNLQGYEINGRQLRVDFAENDKGND 112
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+FV LS++ TE +++ F+ YG I +++ + ++ +PRG+ FI + R M+ A K+
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 69 HGREIGDRIISVN 81
GR+I R + V+
Sbjct: 197 DGRKIEGRRVLVD 209
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+FV LS++ TE +++ F+ YG I +++ + ++ +PRG+ FI + R M+ A K+
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 69 HGREIGDRIISVN 81
GR+I R + V+
Sbjct: 197 DGRKIEGRRVLVD 209
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+FV LS++ TE +++ F+ YG I +++ + ++ +PRG+ FI + R M+ A K+
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 69 HGREIGDRIISVN 81
GR+I R + V+
Sbjct: 197 DGRKIEGRRVLVD 209
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+FV LS++ TE +++ F+ YG I +++ + ++ +PRG+ FI + R M+ A K+
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 69 HGREIGDRIISVN 81
GR+I R + V+
Sbjct: 197 DGRKIEGRRVLVD 209
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+ GLS T+ +L AF +G++LE +++ +R +GR +GF F++++ E A +
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 68 MHGREIGDRIISVNKAQPK 86
M+ + + +I V+ A+P+
Sbjct: 96 MNAKFLDGWVIFVDPAKPR 114
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 6 ENRIFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ IFVG L+ DVT+ L+ F YG + +++ + +TGR +G+GF+ F+D A
Sbjct: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ EM+G R + ++ A PK
Sbjct: 167 MSEMNGVYCSTRPMRISAATPK 188
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 ASKEENR-IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
AS EE R +++G L + V E L H F G+++ +I+ + TG+P G+GFI F
Sbjct: 9 ASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSA 68
Query: 61 MEDAIKEMHGREI 73
E ++ +G ++
Sbjct: 69 AERVLQTYNGTQM 81
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A+ N ++V GLS VT+R LE F + GK+ C +++E T RGF F+T
Sbjct: 57 ATNPGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDA 116
Query: 62 EDAIKEMHGREIGDRIISVNKAQPK 86
E IK ++ + R I+V +++ K
Sbjct: 117 ERCIKHLNQSVLEGRYITVERSRRK 141
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKIL-ECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+F+G L DV E+ L F +G I+ +IM + DTG RGFGFI++ + AI+
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 172
Query: 67 EMHGREIGDRIISVNKA 83
M+G+ + +R I+V+ A
Sbjct: 173 AMNGQYLCNRQITVSYA 189
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A IFVGGL +VT+ L+ F +YG+I +I + +G GF+ FA+R
Sbjct: 290 ADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVG------KGCGFVQFANRNNA 343
Query: 62 EDAIKEMHGREIGDRII 78
E+A+++++G IG + +
Sbjct: 344 EEALQKLNGTMIGKQTV 360
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDR-YGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DVT+ L F Y + +++ + +TGR +G+GF+ F D A+ +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G R + + A P+
Sbjct: 252 MNGVYCSSRPMRIGAATPR 270
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ + +G + ++ +R+TG +G+ F +AD + A
Sbjct: 360 DRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIACA 419
Query: 67 EMHGREIGDRIISVNKA-----QPK 86
++G ++GD+ ++V +A QPK
Sbjct: 420 ALNGIKMGDKTLTVRRANQGTTQPK 444
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
++IFV GL++ TE +L AF +YG +++ I++ + R +GFG++TFA+ A
Sbjct: 32 SKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQI 91
Query: 67 EMHGR 71
M+G+
Sbjct: 92 GMNGK 96
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
++E+ IFVGGL D TE L+ F R G++LE ++ T + RG+ + FA++ +
Sbjct: 415 RKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKK 474
Query: 64 AIKEM 68
A+ EM
Sbjct: 475 ALSEM 479
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
++E+ IFVGGL D TE L+ F R G++LE ++ T + RG+ + FA++ +
Sbjct: 415 RKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKK 474
Query: 64 AIKEM 68
A+ EM
Sbjct: 475 ALSEM 479
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DV++ L F RY + +++++R TGR +G+GF+ FAD A+ E
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 68 MHGREIGDRIISVNKAQPKMGGDDADQ 94
M G R + + A K G +
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSK 255
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
++E+ IFVGGL D TE L+ F R G++LE ++ T + RG+ + FA++ +
Sbjct: 415 RKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKK 474
Query: 64 AIKEM 68
A+ EM
Sbjct: 475 ALSEM 479
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DVT+ L F D+Y + +++ + +TGR +G+GF+ F D A+ E
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G R + + A P+
Sbjct: 249 MNGVFCSSRAMRIGAATPR 267
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+FVG L+ DVT+ L+ F ++ I +++++ +TGR +G+GF+ F D A+ E
Sbjct: 216 VFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTE 275
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G R + V A PK
Sbjct: 276 MNGVYCSSRPMRVGVATPK 294
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+IF+ GL TE L F +G++ + ++++++ TG+ GF +I F + + A K
Sbjct: 71 TKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAAK 130
Query: 67 EMHGR 71
EM+G+
Sbjct: 131 EMNGK 135
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DVT+ L F D+Y + +++ + +TGR +G+GF+ F D A+ E
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G R + + A P+
Sbjct: 249 MNGVFCSSRAMRIGAATPR 267
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+EN + V LS D E L F +G + + ++++TG RGFGF+ F +R + A
Sbjct: 197 DENSVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRA 256
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
I +++G + I+ V A P+
Sbjct: 257 INKLNGYGYDNLILKVEWATPR 278
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ +G + I+ +++TG +G+GF + D + A
Sbjct: 283 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 342
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 343 ALNGLKMGDKTLTVRRA 359
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++F+ GL WD T L F YG++ E +++++ TG+ +G+GF+TF G A++E
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE 133
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
N ++V GLS +T+R+LE F GK+++ ++++ T RGFGF+T + +K
Sbjct: 45 NNLYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVK 104
Query: 67 EMHGREIGDRIISVNKA 83
++ + R+I+V KA
Sbjct: 105 YLNRSVLEGRVITVEKA 121
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ +G + I+ +++TG +G+GF + D + A
Sbjct: 298 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 357
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 358 ALNGLKMGDKTLTVRRA 374
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 49/85 (57%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A ++ ++ V L + E ++ AF G + E I + DTG +GF F+ F ++
Sbjct: 277 AKTQKWKLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDA 336
Query: 62 EDAIKEMHGREIGDRIISVNKAQPK 86
E+AI++++G + G R+I+V+ A PK
Sbjct: 337 ENAIRKLNGSKFGSRLIAVDWAVPK 361
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+FV L + T QLE F G + C ++ ++ + + RGFG++ FA + AI+
Sbjct: 23 LFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQAIELK 82
Query: 69 HGREIGDRIISVNKAQPK 86
+ +GDR I V A P+
Sbjct: 83 NSSLVGDRKIVVKHAIPR 100
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+++VG L +++TE QL F+ +G + Q+ ++ +TG +GFGFI FA + A +
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQS 376
Query: 68 MHGR-EIGDRIISVNKAQPKMGGDDA 92
++G+ EI R I V+ +G D
Sbjct: 377 LNGKLEIAGRTIKVSSVADHIGSQDT 402
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+++VG L +++TE QL F+ +G + Q+ ++ +TG +GFGFI FA + A +
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQS 376
Query: 68 MHGR-EIGDRIISVNKAQPKMGGDDA 92
++G+ EI R I V+ +G D
Sbjct: 377 LNGKLEIAGRTIKVSSVADHIGSQDT 402
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+++VG L +++TE QL F+ +G + Q+ ++ +TG +GFGFI FA + A +
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQS 376
Query: 68 MHGR-EIGDRIISVNKAQPKMGGDDA 92
++G+ EI R I V+ +G D
Sbjct: 377 LNGKLEIAGRTIKVSSVADHIGSQDT 402
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 ENRIFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ IFVG L+ DVT+ L+ F RY + +++++R TGR +G+GF+ FAD A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ EM G R + + A K
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ +G + I+ +++TG +G+GF + D + A
Sbjct: 178 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 237
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 238 ALNGLKMGDKTLTVRRA 254
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGGL + TE Q+ +G + I+ +++TG +G+GF + D + A
Sbjct: 135 DRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACA 194
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 195 ALNGLKMGDKTLTVRRA 211
>Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC |
chr2:38808070-38813158 | 20130731
Length = 259
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 2 ASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGM 61
A K ++VG +S+ TE Q+ F R G+I + + ++++T P GF F+ + R
Sbjct: 29 ALKTSTTVYVGNMSFYTTEEQIYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDT 88
Query: 62 EDAIKEMHGREIGDRIISVN 81
EDA K + G + DR I V+
Sbjct: 89 EDACKYISGTILDDRPIRVD 108
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 ENRIFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ IFVG L+ DVT+ L+ F RY + +++++R TGR +G+GF+ FAD A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ EM G R + + A K
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 ENRIFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ IFVG L+ DVT+ L+ F RY + +++++R TGR +G+GF+ FAD A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ EM G R + + A K
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNK 235
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+FV L+ + LE F ++G IL +++M D G+ +G+GF+ F AI+ +
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSED-GKSKGYGFVQFETEESANAAIERL 158
Query: 69 HGREIGDRIISVNK 82
+G +GD+ I V K
Sbjct: 159 NGYLVGDKQIYVGK 172
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+++ L D++E L F +GKI+ + + + G +GFGF+ F + + A++ M
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKDSN-GMSKGFGFVNFDNPEDAKRAMETM 249
Query: 69 HGREIGDRIISVNKAQPK 86
+G ++G +I+ V +AQ K
Sbjct: 250 NGLQLGSKILYVARAQKK 267
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
+++VG L +++TE L F+ +G+I Q+ ++ +TG +GFGF+ FA + A +
Sbjct: 304 KLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAK-AAQS 362
Query: 68 MHGR-EIGDRIISVNKAQPKMGGDDA 92
++G+ EI R I V+ +G D
Sbjct: 363 LNGKLEIAGRTIKVSSVTDHVGSQDT 388
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 6 ENRIFVGGLSWDVTERQLEHAF-DRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
++ IFVG L+ DVT+ L+ F RY + +++++R TGR +G+GF+ FAD A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
+ EM G R + + A K
Sbjct: 214 MTEMQGVLCSTRPMRIGPATNK 235
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
++E +FVGGL D TE L F G + E ++MM T + +GF F+ F + +
Sbjct: 212 RKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKR 271
Query: 64 AIKEMHGREIGDRIISVNKAQ 84
A+ E+ I + V +Q
Sbjct: 272 AVAELKNPVINGKQCGVTPSQ 292
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
++E +FVGGL D TE L F G + E ++MM T + +GF F+ F + +
Sbjct: 211 RKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKR 270
Query: 64 AIKEMHGREIGDRIISVNKAQ 84
A+ E+ I + V +Q
Sbjct: 271 AVAELKNPVINGKQCGVTPSQ 291
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
++E +FVGGL D TE L F G + E ++MM T + +GF F+ F + +
Sbjct: 211 RKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKR 270
Query: 64 AIKEMHGREIGDRIISVNKAQ 84
A+ E+ I + V +Q
Sbjct: 271 AVAELKNPVINGKQCGVTPSQ 291
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMED 63
++E +FVGGL D TE L F G + E ++MM T + +GF F+ F + +
Sbjct: 212 RKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKR 271
Query: 64 AIKEMHGREIGDRIISVNKAQ 84
A+ E+ I + V +Q
Sbjct: 272 AVAELKNPVINGKQCGVTPSQ 292
>Medtr6g048060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:17334399-17331330 | 20130731
Length = 157
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMER---DTGRPRGFGFITFADRRGME 62
ENR++VG L +TE L F YGKI+ + G PRGF FI ++ +
Sbjct: 12 ENRLYVGNLDLRITEATLLKMFSPYGKIMSEDFLWHTRGPKRGEPRGFAFIQYSTKEEAI 71
Query: 63 DAIKEMHGREIGDRIISVNKAQPKMGGDDAD 93
A ++MHGR R + V A + + AD
Sbjct: 72 LAKEKMHGRLACSRPLVVRLAGERYALEKAD 102
>Medtr0022s0360.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | scaffold0022:121507-124438 | 20130731
Length = 157
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMER---DTGRPRGFGFITFADRRG 60
K ENR+ VG L +TE L F YGKI+ ++ G PRGF FI ++ +
Sbjct: 10 KCENRLCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKEE 69
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPKMGGDDAD 93
A ++MHGR R + V A + + AD
Sbjct: 70 AILAREKMHGRLACSRPLVVRLAGERYALEKAD 102
>Medtr0022s0360.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | scaffold0022:121507-124438 | 20130731
Length = 157
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 4 KEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMER---DTGRPRGFGFITFADRRG 60
K ENR+ VG L +TE L F YGKI+ ++ G PRGF FI ++ +
Sbjct: 10 KCENRLCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKEE 69
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPKMGGDDAD 93
A ++MHGR R + V A + + AD
Sbjct: 70 AILAREKMHGRLACSRPLVVRLAGERYALEKAD 102
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDR-YGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
IFVG L+ DVT+ L F Y + +++ + +TGR +G+GF+ F D A+ +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 68 MHGREIGDRIISVNKAQPK 86
M+G R + + A P+
Sbjct: 252 MNGVYCSSRPMRIGAATPR 270
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGG+ + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 408 DRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACA 467
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 468 ALNGIKMGDKTLTVRRA 484
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGG+ + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 410 DRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACA 469
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 470 ALNGIKMGDKTLTVRRA 486
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
MA N +FV GLS T L AF ++G+++ +++ +R +G +GFGF+ +A
Sbjct: 46 MAEPSTN-LFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLED 104
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPK 86
I+ M G+ + +I A+P+
Sbjct: 105 AAKGIEGMDGKFLEGWVIFAEYARPR 130
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGG+ + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 408 DRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACA 467
Query: 67 EMHGREIGDRIISVNKAQ 84
++G ++GD+ ++V +A
Sbjct: 468 ALNGIKMGDKTLTVRRAN 485
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGG+ + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 410 DRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACA 469
Query: 67 EMHGREIGDRIISV-------NKAQPK 86
++G ++GD+ ++V N QPK
Sbjct: 470 ALNGIKMGDKTLTVRRANQNTNPMQPK 496
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGG+ + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 410 DRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACA 469
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 470 ALNGIKMGDKTLTVRRA 486
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++V GLS VTER LE F + GK+ C +++E T RGF F+T IK +
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 69 HGREIGDRIISVNKAQ 84
+ + R I+V +++
Sbjct: 193 NQSILEGRYITVERSK 208
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGG+ + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 408 DRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACA 467
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 468 ALNGIKMGDKTLTVRRA 484
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 7 NRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIK 66
+RIFVGG+ + TE Q+ + +G + ++ +R+TG +G+ F + D + A
Sbjct: 410 DRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACA 469
Query: 67 EMHGREIGDRIISVNKA 83
++G ++GD+ ++V +A
Sbjct: 470 ALNGIKMGDKTLTVRRA 486
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 5 EENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDA 64
+EN + V LS D E L F +G + + +++ TG RGFGF+ F R + A
Sbjct: 209 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRA 268
Query: 65 IKEMHGREIGDRIISVNKAQPK 86
I +++G + I+ V A P+
Sbjct: 269 INKLNGYGYDNLILRVEWATPR 290
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
+++ + + E +L+ F +G I C++M + GR +G GF+ F AI EM
Sbjct: 306 LYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDA-RGRSKGVGFVAFTTPEEASKAIDEM 364
Query: 69 HGREIGDRIISVNKAQPK 86
+G+ IG + + V+ AQ K
Sbjct: 365 NGKIIGQKPVYVSVAQRK 382
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MASKEENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRG 60
++ + N ++V LS TE L++ F YG I +M + D GR + FGF+ F +
Sbjct: 205 LSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAED 263
Query: 61 MEDAIKEMHGREIGDRIISVNKAQPK 86
A++ ++G+++ D+ V KAQ K
Sbjct: 264 AAKAVEALNGKKVDDKEWYVGKAQKK 289
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
++ ++VGG+ D L+ +R G++++ +IM +D +GF F+T+ + AI
Sbjct: 109 KSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAI 168
Query: 66 KEMHGREIGDRIISVNKAQPK 86
+E++ E R I + +Q K
Sbjct: 169 EELNNTEFKGRKIKCSTSQAK 189
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
++ ++VGG+ D L+ +R G++++ +IM +D +GF F+T+ + AI
Sbjct: 109 KSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAI 168
Query: 66 KEMHGREIGDRIISVNKAQPK 86
+E++ E R I + +Q K
Sbjct: 169 EELNNTEFKGRKIKCSTSQAK 189
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 6 ENRIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAI 65
++ ++VGG+ D L+ +R G++++ +IM +D +GF F+T+ + AI
Sbjct: 109 KSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAI 168
Query: 66 KEMHGREIGDRIISVNKAQPK 86
+E++ E R I + +Q K
Sbjct: 169 EELNNTEFKGRKIKCSTSQAK 189
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
IF+ L + + L F +G IL C+I M+ +G +G+GF+ F + + AI ++
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKL 172
Query: 69 HGREIGDRIISVNKAQPKMGGDDA 92
+G + D+ + V Q K D+A
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDRDNA 196
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 8 RIFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKE 67
++FV GLS + T L F YG + E ++ ++ TGR +G+GF+ + G A+KE
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 68 MHGREIGDRIISVNKAQPKMGGD 90
+ G ++ A GGD
Sbjct: 137 PSKKIDGRMTVTQLAAAGSTGGD 159
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 9 IFVGGLSWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEM 68
++VGG+ D L+ +R G++++ +IM +D +GF F+T+ + AI+E+
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 69 HGREIGDRIISVNKAQPK 86
+ E R I + +Q K
Sbjct: 172 NNTEFKGRKIKCSTSQAK 189