Miyakogusa Predicted Gene

Lj5g3v2217190.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2217190.1 tr|B9HS45|B9HS45_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_767606 PE=4
SV=1,42.31,3e-18,seg,NULL,CUFF.56939.1
         (130 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g111300.1 | hypothetical protein | HC | chr1:50274195-5027...   138   2e-33

>Medtr1g111300.1 | hypothetical protein | HC |
           chr1:50274195-50274709 | 20130731
          Length = 131

 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 84/130 (64%), Gaps = 3/130 (2%)

Query: 1   MDSDPSVLFEAENDDDTFYAEIKRQILLLTSE-DNEDLQETRDSNPFSVTKGGXXXXXXX 59
           M+SD SV FE EN+DDTFY EIKRQILLLTSE DNEDL ET       VT  G       
Sbjct: 3   MNSDSSVWFETENEDDTFYDEIKRQILLLTSEEDNEDLVETNSFRQIDVTNDGSNRSIYN 62

Query: 60  XXXXXXXXXXXXXLWETECSVSPPVWLVNLWGKGNKGTGVFIPQAACRKNQKPGGMNNRR 119
                        LWET+ S SPP+WL NLW  G KGTGVFIPQ +C++NQ+P  MNNR 
Sbjct: 63  YNNATKPTRKFY-LWETDSSGSPPIWLTNLWRNG-KGTGVFIPQVSCKENQRPARMNNRT 120

Query: 120 RKIYRQVVNK 129
           RKIYR VVNK
Sbjct: 121 RKIYRPVVNK 130