Miyakogusa Predicted Gene

Lj5g3v2193940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2193940.1 Non Characterized Hit- tr|I1MB48|I1MB48_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,73.68,0.00000004,
,CUFF.56919.1
         (50 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g093520.1 | transducin/WD40 repeat protein | HC | chr3:427...    57   3e-09
Medtr5g068570.1 | transducin/WD40 repeat protein | HC | chr5:290...    48   2e-06
Medtr5g068570.2 | transducin/WD40 repeat protein | HC | chr5:290...    48   2e-06
Medtr6g460700.1 | hypothetical protein | LC | chr6:20972946-2097...    47   3e-06

>Medtr3g093520.1 | transducin/WD40 repeat protein | HC |
          chr3:42734718-42725141 | 20130731
          Length = 484

 Score = 57.4 bits (137), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 30/40 (75%), Gaps = 2/40 (5%)

Query: 1  MEGGGRRFTVSPRPCCGRRV-VGKKRLQRGG-VVDGFVTN 38
          MEG GRR TVSPRPCCGRRV V  K+  RGG  VDGFV +
Sbjct: 1  MEGTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNS 40


>Medtr5g068570.1 | transducin/WD40 repeat protein | HC |
          chr5:29030009-29035187 | 20130731
          Length = 488

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/27 (66%), Positives = 21/27 (77%)

Query: 12 PRPCCGRRVVGKKRLQRGGVVDGFVTN 38
          PRPCCGRRVV KK+  RGG  DGF+ +
Sbjct: 17 PRPCCGRRVVAKKKQGRGGAGDGFINS 43


>Medtr5g068570.2 | transducin/WD40 repeat protein | HC |
          chr5:29029960-29035186 | 20130731
          Length = 488

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/27 (66%), Positives = 21/27 (77%)

Query: 12 PRPCCGRRVVGKKRLQRGGVVDGFVTN 38
          PRPCCGRRVV KK+  RGG  DGF+ +
Sbjct: 17 PRPCCGRRVVAKKKQGRGGAGDGFINS 43


>Medtr6g460700.1 | hypothetical protein | LC |
          chr6:20972946-20970305 | 20130731
          Length = 218

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 2  EGGGRRFTVSPRPCCGRRVV--GKKRLQRGG-VVDGFVTN 38
          EG GRR TVSPRPCC RRV    KK+  RGG  VD F+ N
Sbjct: 38 EGTGRRITVSPRPCCSRRVRVDAKKKTSRGGRTVDEFINN 77