Miyakogusa Predicted Gene

Lj5g3v2193910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2193910.1 Non Characterized Hit- tr|I3SUA7|I3SUA7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain; RNA
recognition motif,RNA reco,CUFF.56923.1
         (286 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g066460.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   462   e-130
Medtr8g066460.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   458   e-129
Medtr5g029640.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   392   e-109
Medtr8g105910.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   279   2e-75
Medtr1g032860.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   274   5e-74
Medtr7g086080.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   203   2e-52
Medtr5g039130.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   154   7e-38
Medtr7g010100.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   121   8e-28
Medtr5g038107.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   102   6e-22

>Medtr8g066460.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr8:27633972-27639318 | 20130731
          Length = 279

 Score =  462 bits (1188), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/286 (80%), Positives = 253/286 (88%), Gaps = 7/286 (2%)

Query: 1   MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 60
           M++KTIKV NVSLGASE+D+KEFFSFSGDIEYVEMQS+DERSQIA+VTFKD QGAETAVL
Sbjct: 1   MSVKTIKVDNVSLGASEQDLKEFFSFSGDIEYVEMQSYDERSQIAFVTFKDPQGAETAVL 60

Query: 61  LSGATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFIL 120
           LSGATIVDL V I LDPDY++PPAALASS +EGK P G +SALRKAEDVVTSMLAKGFIL
Sbjct: 61  LSGATIVDLSVKITLDPDYKLPPAALASSASEGKTPGGADSALRKAEDVVTSMLAKGFIL 120

Query: 121 GKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVD 180
           GKDAVNKAK  DEKHQLSSTASAKV+S DQKLGL+EK+              + RV+EVD
Sbjct: 121 GKDAVNKAKGFDEKHQLSSTASAKVTSFDQKLGLSEKL-------TAGASVVSGRVKEVD 173

Query: 181 QKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKE 240
           QKFQVSEKTKSAFA AEQKVSTAGSAIMKNRY+LTG TWVTGAF+KVAKAAGDVGQKTKE
Sbjct: 174 QKFQVSEKTKSAFAAAEQKVSTAGSAIMKNRYILTGTTWVTGAFNKVAKAAGDVGQKTKE 233

Query: 241 KLESVQEEEKRKVEDQYAHVLSESPKAAATSEVHSSKPAPAQGLIL 286
           K+E+ + E+ RKVEDQYA VLSESPKAAATSE+HSSKPAPAQGLIL
Sbjct: 234 KVENAEVEQNRKVEDQYAQVLSESPKAAATSELHSSKPAPAQGLIL 279


>Medtr8g066460.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr8:27635035-27639318 | 20130731
          Length = 295

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/286 (80%), Positives = 252/286 (88%), Gaps = 7/286 (2%)

Query: 1   MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 60
           + +KTIKV NVSLGASE+D+KEFFSFSGDIEYVEMQS+DERSQIA+VTFKD QGAETAVL
Sbjct: 17  LQVKTIKVDNVSLGASEQDLKEFFSFSGDIEYVEMQSYDERSQIAFVTFKDPQGAETAVL 76

Query: 61  LSGATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFIL 120
           LSGATIVDL V I LDPDY++PPAALASS +EGK P G +SALRKAEDVVTSMLAKGFIL
Sbjct: 77  LSGATIVDLSVKITLDPDYKLPPAALASSASEGKTPGGADSALRKAEDVVTSMLAKGFIL 136

Query: 121 GKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVD 180
           GKDAVNKAK  DEKHQLSSTASAKV+S DQKLGL+EK+              + RV+EVD
Sbjct: 137 GKDAVNKAKGFDEKHQLSSTASAKVTSFDQKLGLSEKL-------TAGASVVSGRVKEVD 189

Query: 181 QKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKE 240
           QKFQVSEKTKSAFA AEQKVSTAGSAIMKNRY+LTG TWVTGAF+KVAKAAGDVGQKTKE
Sbjct: 190 QKFQVSEKTKSAFAAAEQKVSTAGSAIMKNRYILTGTTWVTGAFNKVAKAAGDVGQKTKE 249

Query: 241 KLESVQEEEKRKVEDQYAHVLSESPKAAATSEVHSSKPAPAQGLIL 286
           K+E+ + E+ RKVEDQYA VLSESPKAAATSE+HSSKPAPAQGLIL
Sbjct: 250 KVENAEVEQNRKVEDQYAQVLSESPKAAATSELHSSKPAPAQGLIL 295


>Medtr5g029640.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr5:12456373-12449233 | 20130731
          Length = 465

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/285 (72%), Positives = 236/285 (82%), Gaps = 10/285 (3%)

Query: 1   MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 60
           M+IKT+KV NVSLGA+ERDI+EFFSFSGDI YVE++SHDERSQ AYVTFKDSQGAETAVL
Sbjct: 1   MSIKTVKVGNVSLGATERDIQEFFSFSGDIAYVELRSHDERSQTAYVTFKDSQGAETAVL 60

Query: 61  LSGATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFIL 120
           LSGATIVDL V+I LDPDYQ+PP AL S  +E K P G +SALRKAEDVVTSM AKGFIL
Sbjct: 61  LSGATIVDLSVNITLDPDYQLPPEALVSPVSESKTPGGADSALRKAEDVVTSMAAKGFIL 120

Query: 121 GKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVD 180
           GKDAVNKAKT DEK QLSS ASA V+S+DQKLGL++KI              +D+VREVD
Sbjct: 121 GKDAVNKAKTFDEKLQLSSKASATVASVDQKLGLSDKI-------GAGASVVSDKVREVD 173

Query: 181 QKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKE 240
           QKF VSEKTKSAFA AEQ VSTAGSAIMKNRYVLTGA+WVTGAF++V+KAA +VGQKTKE
Sbjct: 174 QKFLVSEKTKSAFAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNRVSKAAVEVGQKTKE 233

Query: 241 KLESVQEEEKRKVEDQYAHVLSESPKAAATSEVHSSK---PAPAQ 282
           K+E+ +++EKR+VEDQYA VLSE  KAAA +    S    PAPAQ
Sbjct: 234 KVENAEQQEKRQVEDQYAQVLSEPSKAAAAASEQQSSKPGPAPAQ 278



 Score =  219 bits (559), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/165 (70%), Positives = 133/165 (80%), Gaps = 7/165 (4%)

Query: 107 EDVVTSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXX 166
           EDVV+SM AKGF LGKDAVNKAKT DEK QLSS AS  V+SIDQKLGL+EKI        
Sbjct: 279 EDVVSSMAAKGFTLGKDAVNKAKTFDEKLQLSSKASVTVASIDQKLGLSEKIGAGASVVG 338

Query: 167 XXXXXXTDRVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSK 226
                  D+VREVDQKF VSEKTKSAFA AEQ VSTAGSAIMKNRYVLTGA+WVTGAF++
Sbjct: 339 -------DKVREVDQKFLVSEKTKSAFAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNR 391

Query: 227 VAKAAGDVGQKTKEKLESVQEEEKRKVEDQYAHVLSESPKAAATS 271
           V+KAA +V QKTKEK+E+ +++EKR+VEDQYA VLSE  KAAA +
Sbjct: 392 VSKAAVEVSQKTKEKVENAEQQEKRQVEDQYAQVLSEPSKAAAAN 436


>Medtr8g105910.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr8:44708434-44705936 | 20130731
          Length = 311

 Score =  279 bits (714), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/276 (53%), Positives = 196/276 (71%), Gaps = 18/276 (6%)

Query: 3   IKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLS 62
           IKT+KVSNVS+ A+E+DIKEFFSFSGDI+YVEMQ   E ++ AYVTFK+SQGA+TAVLL+
Sbjct: 31  IKTVKVSNVSMTATEKDIKEFFSFSGDIQYVEMQKETESTKTAYVTFKNSQGADTAVLLT 90

Query: 63  GATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFILGK 122
           G+ I + PV+I    +YQ+PP A   S  + + P    +A++KAED V++MLAKGF+LGK
Sbjct: 91  GSNIANSPVTITPFENYQLPPEAQPFSPNQKQTP----AAVKKAEDAVSTMLAKGFVLGK 146

Query: 123 DAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVDQK 182
            A+N+AK+ DE+H L S ASA V+SID+K+GLT+K+               ++VRE+D+K
Sbjct: 147 GAINRAKSFDERHHLISNASATVASIDRKIGLTDKL-------SIGTAIVNEKVREMDEK 199

Query: 183 FQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKEKL 242
           FQVSEKTKS +AVAEQK S AGSAIM N YV TGA+WV+ A + VAKAA DV   T EK+
Sbjct: 200 FQVSEKTKSVYAVAEQKASDAGSAIMSNPYVSTGASWVSSAITVVAKAAEDVTTMTMEKV 259

Query: 243 ESVQEE-------EKRKVEDQYAHVLSESPKAAATS 271
           E  + +       E++ V D+ +H+ SE P    TS
Sbjct: 260 EMAEVDKKEIIYSERKDVVDELSHIHSEKPSVGNTS 295


>Medtr1g032860.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:11766966-11762832 | 20130731
          Length = 311

 Score =  274 bits (701), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 143/265 (53%), Positives = 192/265 (72%), Gaps = 19/265 (7%)

Query: 3   IKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLS 62
           I+T+KVSN+SL  S++DI+EFFSFSGDI+Y+EMQ   +R+Q+AYVTFKDSQGAETAVLL+
Sbjct: 31  IRTVKVSNISLITSKQDIEEFFSFSGDIQYIEMQRESDRTQVAYVTFKDSQGAETAVLLT 90

Query: 63  GATIVDLPVSIALDPDYQVPPAALASSETEGKGPSGPESALRKAEDVVTSMLAKGFILGK 122
           G+ I DL V+I+    YQ+PP AL SS T          A++K EDV+++MLAKGFILGK
Sbjct: 91  GSKIGDLYVTISPVEQYQLPPEALPSSPTNQSA-----DAVKKTEDVISTMLAKGFILGK 145

Query: 123 DAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXXXXTDRVREVDQK 182
           DA+NK K++DE+ QL+S AS+ V+SID K+GL++K+               ++V+E+D++
Sbjct: 146 DAINKTKSIDERLQLTSNASSAVASIDNKIGLSDKL-------SIGTTIVNEKVKEMDER 198

Query: 183 FQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVAKAAGDVGQKTKEKL 242
           +Q+SE TKSA AVAEQK S+AGSAIM N YVLTGA W++ AFS VAKAA DV   T EK+
Sbjct: 199 YQLSEMTKSAIAVAEQKASSAGSAIMSNSYVLTGALWLSSAFSVVAKAAEDVSTMTMEKV 258

Query: 243 ESVQEE-------EKRKVEDQYAHV 260
           E  + E       E++   D+YA +
Sbjct: 259 EQAEVENKEIIYSERKGTVDEYAQM 283


>Medtr7g086080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:33392159-33388471 | 20130731
          Length = 265

 Score =  203 bits (516), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 117/258 (45%), Positives = 163/258 (63%), Gaps = 25/258 (9%)

Query: 1   MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 60
           M  +T++V  +S  A+ER+I EFFSFSG+IE++++     + + A+VTFKD +  E A+L
Sbjct: 1   MQTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPRALEIALL 60

Query: 61  LSGATIVDLPVSIALDPDY----------------QVPPAALASSETEGKGPSGPESALR 104
           LSGATIVD  VSI+   +Y                 + P   A+S TE + P G    L 
Sbjct: 61  LSGATIVDQIVSISPVENYVANRETQEVGVVEYAINIAPED-AASNTEEEKPGG-RIYLS 118

Query: 105 KAEDVVTSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXX 164
           KA+DVVT+MLAKG  + +DAVNKAK  DEKHQL++ ASAKVS+ D+++GLTEK+      
Sbjct: 119 KAQDVVTTMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVSNFDKRVGLTEKL------ 172

Query: 165 XXXXXXXXTDRVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAF 224
                    ++V+ VDQ+  VS+KT +A   AE+K++  GSA+  +RYV  G TW+TGAF
Sbjct: 173 -TVGLSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTTWLTGAF 231

Query: 225 SKVAKAAGDVGQKTKEKL 242
           SKVA+A    G KT+EK 
Sbjct: 232 SKVARAGNVAGTKTREKF 249


>Medtr5g039130.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:17217313-17213389 | 20130731
          Length = 249

 Score =  154 bits (390), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/249 (36%), Positives = 148/249 (59%), Gaps = 30/249 (12%)

Query: 6   IKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLSGAT 65
           ++V+ +S  A+++D+ EFF+FSG I++VE+    + +  AYVTFKD+   +TA LLSGAT
Sbjct: 10  VEVTGLSPQATDKDVYEFFAFSGAIQHVEIIRSGDYACTAYVTFKDAYSQDTACLLSGAT 69

Query: 66  IVDLPVSIAL-----DPDYQVPPAALASSETEGKGPSGPES------------ALRKAED 108
           I+D  V I       + D+   P+   S E E    +  ++            A+   ++
Sbjct: 70  ILDQRVCITRWGQYEEHDFWSRPSY--SHEEENSYTTQHQTQHSSQFVSSAGEAVAMTQE 127

Query: 109 VVTSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXX 168
           VV +MLAKG++L KDA++KAK  DE H++S+TA+AKVS + QK+GLT+K+          
Sbjct: 128 VVKTMLAKGYVLSKDALSKAKDFDESHRVSATATAKVSELSQKIGLTDKLSAGY------ 181

Query: 169 XXXXTDRVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIMKNRYVLTGATWVTGAFSKVA 228
                D V+ VDQK+ VS  T +A +   + V+ A ++++ + Y   GA W++GA ++ A
Sbjct: 182 -----DAVKSVDQKYNVSGTTMAAASATGRTVAAAANSVVNSSYFSKGALWMSGALTRAA 236

Query: 229 KAAGDVGQK 237
           +AA D+G +
Sbjct: 237 QAASDLGNR 245


>Medtr7g010100.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:2383435-2379049 | 20130731
          Length = 255

 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 130/263 (49%), Gaps = 49/263 (18%)

Query: 5   TIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVLLSGA 64
           T +++N++  A+E D++ FF + G IE V++    +    AYVTF+D+   ETA+LL+G+
Sbjct: 7   TAEITNLTPRATENDVQNFFGYCGVIERVDVIRSSDYESTAYVTFRDAYALETALLLNGS 66

Query: 65  TIVDLPVSIA--------------LDPDYQVPPAALASSETEGKGPSGPESALRKAEDVV 110
            I+D  +SI+              L P+++      +      K  S P  AL  A+ VV
Sbjct: 67  MILDRCISISRWETYTDDSNNWNNLTPNHE-DSITYSQDMHMDKFVSSPGEALTMAQQVV 125

Query: 111 TSMLAKGFILGKDAVNKAKTLDEKHQLSSTASAKVSSIDQKLGLTEKIXXXXXXXXXXXX 170
            +M+AKGF+L KDA   AK  DE   +SSTA+ KV+ +  K+GLTE I            
Sbjct: 126 KTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETI-----------N 174

Query: 171 XXTDRVREVDQKFQVSEKTKSAFAVAEQKVSTAGSAIM-----------------KNRYV 213
              +  + VD+K+ V++ TKSA  V      T  +AI+                  + Y 
Sbjct: 175 SGIETFKSVDEKYHVTDITKSAATV------TGTTAIVVATVTGRAAMAAGSAIANSSYF 228

Query: 214 LTGATWVTGAFSKVAKAAGDVGQ 236
             GA WV+   S+ AK+  D+G 
Sbjct: 229 AKGALWVSDMLSRAAKSTADLGH 251


>Medtr5g038107.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | LC | chr5:16661140-16658533 | 20130731
          Length = 129

 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 1  MTIKTIKVSNVSLGASERDIKEFFSFSGDIEYVEMQSHDERSQIAYVTFKDSQGAETAVL 60
          M+IKT+KV NVSLGA++RDI EFF+F GDI YVE++SHDE SQ AYVTFKD+ GAETAVL
Sbjct: 1  MSIKTVKVINVSLGAAKRDILEFFTFCGDIAYVELRSHDEGSQTAYVTFKDTHGAETAVL 60

Query: 61 LS 62
          LS
Sbjct: 61 LS 62