Miyakogusa Predicted Gene

Lj5g3v2183890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2183890.1 Non Characterized Hit- tr|I3S518|I3S518_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,Ribosomal
proteins L15p and L18e,Ribosomal protein L18e/L15P; rplO_bact:
ribosomal protein L15,Ribos,CUFF.56936.1
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g110750.1 | 50S ribosomal protein L15 | HC | chr1:49982969...   234   4e-62

>Medtr1g110750.1 | 50S ribosomal protein L15 | HC |
           chr1:49982969-49989551 | 20130731
          Length = 257

 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 138/191 (72%), Gaps = 5/191 (2%)

Query: 21  FKGTLKTLEARP----CLKIQRPRPRXXXXXXXXXXXXXXXXXXXXRFRLDNLGPQPXXX 76
           FKG +KTL A+P    CLKIQR + R                    RFRLDNLGPQP   
Sbjct: 20  FKGNVKTLVAKPYLCPCLKIQRTKHRVSVINKSVSASVQPAGENV-RFRLDNLGPQPGSR 78

Query: 77  XXXXXXXXXXXXXQGASCGFGMRGQKSRSGPGVRRGFEGGQMPLYRRIPKLRGIAGGMSA 136
                        QGASCGFGMRGQKSRSGPG+ RGFEGGQMPLYRR+PKLRGIAGGM A
Sbjct: 79  KRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHA 138

Query: 137 GLPKYVHVNLRDIEGAKFQDGDEVSLESLKEKGVINPSGRERRLPLKILGEGELSKKLTV 196
           GLPKYVH+NL+DIE A FQ+G+EVSLE+L EK VINPSGRER+L LK+LGEGEL KKLT+
Sbjct: 139 GLPKYVHINLKDIENAGFQEGEEVSLETLTEKRVINPSGRERKLLLKVLGEGELGKKLTI 198

Query: 197 KARAFSTSAKE 207
           KA AFSTSAKE
Sbjct: 199 KAGAFSTSAKE 209