Miyakogusa Predicted Gene

Lj5g3v2182440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2182440.1 Non Characterized Hit- tr|B9SLZ4|B9SLZ4_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,42.14,2e-16,seg,NULL,CUFF.56953.1
         (149 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g110190.1 | hypothetical protein | HC | chr1:49693692-4969...   140   3e-34
Medtr7g082520.1 | 50S ribosomal-like protein, putative | HC | ch...    54   6e-08

>Medtr1g110190.1 | hypothetical protein | HC |
           chr1:49693692-49694353 | 20130731
          Length = 138

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/154 (55%), Positives = 95/154 (61%), Gaps = 22/154 (14%)

Query: 1   MATLQKFKLFALQCGAVQSPT----RSPMVQLPRPKTTLRALLGLSLTRPPRRREDVPSA 56
           MA LQ+FKLFA QCG  +SPT     SP++QLPRPKTTLR LLGLSLTRP RR+  V   
Sbjct: 1   MAKLQRFKLFATQCGVEKSPTLSPRTSPLIQLPRPKTTLRTLLGLSLTRPQRRQGHVSVL 60

Query: 57  MEKEKDSQRRQKLKDLFVXXXXXXXXXXXXA-TPLLGSVAAVGIGVGNSSNMGLARSGSW 115
            +K+KDS RR  LKDLFV            A +P+LG             NMGL RS   
Sbjct: 61  EKKDKDSMRRSSLKDLFVSSPSREEDEEGHASSPMLG-------------NMGLFRSDD- 106

Query: 116 RGGPGSMNPVWAGFRCRSLLKRKAWRPLLNTITE 149
               G  NPVW  FRCRSLLKRKAWRP+L TITE
Sbjct: 107 ---TGLNNPVWTAFRCRSLLKRKAWRPMLLTITE 137


>Medtr7g082520.1 | 50S ribosomal-like protein, putative | HC |
           chr7:31627289-31626252 | 20130731
          Length = 157

 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 69/166 (41%), Gaps = 29/166 (17%)

Query: 4   LQKFKLFALQCGAVQSPTR----SPMVQLPRPKTTLRALLGLSLTRPPRRRE----DVPS 55
           + KFKL A QC    SPTR    SP++ L R KT     L + LTRP  RR      +  
Sbjct: 1   MHKFKLLATQCAIANSPTRSPTTSPVIHLRRRKT-----LRMFLTRPHDRRRFHPPPLDP 55

Query: 56  AMEKEKDSQRRQKLKDLFVXXXXXXXXXXXXATPLLGSVAAVGIGVGNSSNMGLA----- 110
                 + + R KLKDLFV               +L     +        N         
Sbjct: 56  PPPSSDEVKVRHKLKDLFVSSPSPPSLPSPPT--MLQDEKNISQQQQQQQNYDQKDCSTV 113

Query: 111 ----RSGS-WR--GGPGSMNPVWAGFRCRSLLKRKAWRPLLNTITE 149
               R+GS +R      ++ PV + FR R L  R+AWRP+L TI E
Sbjct: 114 AVRFRTGSPFRRSSAVAALRPVSSAFRYRLL--RRAWRPVLFTIPE 157