Miyakogusa Predicted Gene

Lj5g3v2179870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2179870.1 tr|Q0WU05|Q0WU05_ARATH Auxin regulated protein
OS=Arabidopsis thaliana GN=At2g33310 PE=2
SV=1,34.81,0.00000000002,seg,NULL; IAA_ARF,Aux/IAA-ARF-dimerisation;
AUX_IAA,AUX/IAA protein,gene.g63165.t1.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g109510.1 | auxin-responsive AUX/IAA family protein | HC |...   147   1e-36
Medtr1g040675.2 | auxin response factor | HC | chr1:15063472-150...    48   3e-06
Medtr1g040675.1 | auxin response factor | HC | chr1:15063378-150...    48   3e-06
Medtr1g076270.1 | auxin response factor | HC | chr1:33944737-339...    47   3e-06
Medtr1g093350.1 | auxin response factor | HC | chr1:33849453-338...    47   3e-06
Medtr4g124300.1 | auxin-responsive AUX/IAA family protein | HC |...    47   4e-06

>Medtr1g109510.1 | auxin-responsive AUX/IAA family protein | HC |
           chr1:49537832-49539058 | 20130731
          Length = 178

 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 84/114 (73%), Gaps = 6/114 (5%)

Query: 11  SVYDDDLMDWPHSDLHLKNSSTMHSRSVHDEELEGVQSNERWAYVKVNMDGVTIGRKICV 70
           ++YDDDLMDWP+    +KNS ++H     DEE+EGVQSNERWAYVKVNMDGV+IGRKIC+
Sbjct: 48  NLYDDDLMDWPN----MKNSRSVHEN--FDEEIEGVQSNERWAYVKVNMDGVSIGRKICI 101

Query: 71  LDHGGYSSLAIQLEDMXXXXXXXXXXXXXXXXXYSLFYKDREDNWRHVGDVPWK 124
           LDHGGYSSLAIQLEDM                 YSLFYKD EDNWR VGDV WK
Sbjct: 102 LDHGGYSSLAIQLEDMFGSQSVSGIRLFESGSEYSLFYKDSEDNWRTVGDVLWK 155


>Medtr1g040675.2 | auxin response factor | HC |
           chr1:15063472-15065737 | 20130731
          Length = 162

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)

Query: 17  LMDWPHSDLHLKNSSTMHSRSVHDEELEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGY 76
           ++ WP    + KN+       + + E+ G+       YVKV+MDG    RKI +  +GGY
Sbjct: 68  IVGWPPIRSYRKNT-------LQEAEVGGI-------YVKVSMDGAPYLRKIDLRIYGGY 113

Query: 77  SSLAIQLEDMXXXXXXX-XXXXXXXXXXYSLFYKDREDNWRHVGDVPWK 124
             L   LE M                  Y+  Y+D++ +W  VGDVPW+
Sbjct: 114 PELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWE 162


>Medtr1g040675.1 | auxin response factor | HC |
           chr1:15063378-15065770 | 20130731
          Length = 186

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 15/108 (13%)

Query: 17  LMDWPHSDLHLKNSSTMHSRSVHDEELEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGY 76
           ++ WP    + KN+       + + E+ G+       YVKV+MDG    RKI +  +GGY
Sbjct: 68  IVGWPPIRSYRKNT-------LQEAEVGGI-------YVKVSMDGAPYLRKIDLRIYGGY 113

Query: 77  SSLAIQLEDMXXXXXXX-XXXXXXXXXXYSLFYKDREDNWRHVGDVPW 123
             L   LE M                  Y+  Y+D++ +W  VGDVPW
Sbjct: 114 PELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPW 161


>Medtr1g076270.1 | auxin response factor | HC |
           chr1:33944737-33945503 | 20130731
          Length = 178

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 17  LMDWPHSDLHLKNSSTMHSRSVHDEELEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGY 76
           ++ WP    + KNS       + + E  G+       YVKV++DG    RKI +  +GGY
Sbjct: 64  IVGWPPIRSYRKNS-------LQEAEASGI-------YVKVSLDGAPYLRKIDLRVYGGY 109

Query: 77  SSLAIQLEDMXXXXXXX-XXXXXXXXXXYSLFYKDREDNWRHVGDVPWK 124
           + L   LE M                  Y   Y+D++ +W  VGDVPW+
Sbjct: 110 AQLLKALESMFKLTIGNYSEKEGYKGSEYEPTYEDKDGDWMLVGDVPWE 158


>Medtr1g093350.1 | auxin response factor | HC |
           chr1:33849453-33847986 | 20130731
          Length = 178

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 15/109 (13%)

Query: 17  LMDWPHSDLHLKNSSTMHSRSVHDEELEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGY 76
           ++ WP    + KNS       + + E  G+       YVKV++DG    RKI +  +GGY
Sbjct: 64  IVGWPPIRSYRKNS-------LQEAEASGI-------YVKVSLDGAPYLRKIDLRVYGGY 109

Query: 77  SSLAIQLEDMXXXXXXX-XXXXXXXXXXYSLFYKDREDNWRHVGDVPWK 124
           + L   LE M                  Y   Y+D++ +W  VGDVPW+
Sbjct: 110 AQLLKALESMFKLTIGNYSEKEGYKGSEYEPTYEDKDGDWMLVGDVPWE 158


>Medtr4g124300.1 | auxin-responsive AUX/IAA family protein | HC |
           chr4:51327848-51326632 | 20130731
          Length = 184

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 54  YVKVNMDGVTIGRKICVLDHGGYSSLAIQLEDMXXXXXXXXXXXXXXXXXY-SLFYKDRE 112
           +VKV M+G+ IGRK+ +L+H  Y  L   L  M                 +  L Y+D+E
Sbjct: 96  FVKVYMEGIPIGRKLNLLEHHSYDGLIKALCHMFRTTILCPNSQPLNSWNFHVLTYEDQE 155

Query: 113 DNWRHVGDVPWK 124
            +W  VGDVPW+
Sbjct: 156 GDWMMVGDVPWE 167