Miyakogusa Predicted Gene

Lj5g3v2179660.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2179660.1 Non Characterized Hit- tr|C6T177|C6T177_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2 S,66.28,7e-19,
,CUFF.56844.1
         (92 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g109370.2 | ubiquitin-like Rad60 SUMO-like protein | HC | ...    84   2e-17
Medtr1g109370.1 | ubiquitin-like Rad60 SUMO-like protein | HC | ...    84   2e-17

>Medtr1g109370.2 | ubiquitin-like Rad60 SUMO-like protein | HC |
          chr1:49456640-49454943 | 20130731
          Length = 216

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 60/86 (69%), Gaps = 7/86 (8%)

Query: 1  MMDEPEELEPLFDYSRVQPLNNFVCLDDDEDEDVTCAAKKRK----SSKPVENEKKETNV 56
          M DE EELEPLFDYSRVQP  N VCLDDDED+DV    KKRK    S   VEN  K T V
Sbjct: 1  MADETEELEPLFDYSRVQP--NIVCLDDDEDDDVVAFPKKRKKNSKSQHVVEN-GKNTKV 57

Query: 57 KGVEVVDIEDDDWLPPPPKVVSKAQR 82
          + V VVD+EDDDWLP PP+V  KA +
Sbjct: 58 ETVNVVDLEDDDWLPSPPRVTGKAHK 83


>Medtr1g109370.1 | ubiquitin-like Rad60 SUMO-like protein | HC |
          chr1:49456640-49454943 | 20130731
          Length = 216

 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 60/86 (69%), Gaps = 7/86 (8%)

Query: 1  MMDEPEELEPLFDYSRVQPLNNFVCLDDDEDEDVTCAAKKRK----SSKPVENEKKETNV 56
          M DE EELEPLFDYSRVQP  N VCLDDDED+DV    KKRK    S   VEN  K T V
Sbjct: 1  MADETEELEPLFDYSRVQP--NIVCLDDDEDDDVVAFPKKRKKNSKSQHVVEN-GKNTKV 57

Query: 57 KGVEVVDIEDDDWLPPPPKVVSKAQR 82
          + V VVD+EDDDWLP PP+V  KA +
Sbjct: 58 ETVNVVDLEDDDWLPSPPRVTGKAHK 83