Miyakogusa Predicted Gene

Lj5g3v2179600.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2179600.1 Non Characterized Hit- tr|Q5RFT2|Q5RFT2_PONAB
Putative uncharacterized protein DKFZp469I134
OS=Pongo,51.72,1e-18,ZF_C3H1,Zinc finger, CCCH-type; coiled-coil,NULL;
CCCH zinc finger,NULL; zf-CCCH,Zinc finger, CCCH-t,CUFF.56838.1
         (357 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g109320.1 | zinc finger CCCH domain protein | HC | chr1:49...   465   e-131
Medtr5g090040.1 | zinc finger C-x8-C-x5-C-x3-H type family prote...   140   2e-33
Medtr3g050390.1 | zinc finger CCCH domain protein | LC | chr3:19...    56   6e-08
Medtr4g094292.1 | zinc finger C-x8-C-x5-C-x3-H type protein | HC...    51   2e-06
Medtr8g066730.1 | zinc finger CCCH domain protein | HC | chr8:27...    49   6e-06

>Medtr1g109320.1 | zinc finger CCCH domain protein | HC |
           chr1:49436307-49432456 | 20130731
          Length = 357

 Score =  465 bits (1197), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/369 (68%), Positives = 276/369 (74%), Gaps = 26/369 (7%)

Query: 3   MHNKNACSPSSNGG---GFRTA----TTAGSFASMYDY--EKLPS-LSGNSS---GASLY 49
           MHNK+ CSPSS  G   G   A    + AG FAS+Y      LPS L+GNSS   G SLY
Sbjct: 1   MHNKDVCSPSSKSGYGIGVNNAGHMQSNAGVFASLYSALSNDLPSSLAGNSSNGGGFSLY 60

Query: 50  PYTGSAAQYDSCFIQKQQDMVNRHNMCLTRLLETSKEVEALQQENGQLRAVNNELQKQLD 109
           PY+    +YDSC IQK QDMVNRH+M L+RLLE+SKEVEALQQENGQLRAVN ELQK L+
Sbjct: 61  PYSDLGTEYDSCVIQKHQDMVNRHSMFLSRLLESSKEVEALQQENGQLRAVNKELQKNLN 120

Query: 110 QIVIQASLENRFXXXXXXXXXXXXQTPPSAAFEHLAHAFRSFQIGDGKENCADWXXXXXX 169
            +++QASLENRF            Q+ P   F+ L   FR   +GDGKENCADW      
Sbjct: 121 -LLVQASLENRFNGGGSSVQT---QSTP---FDVL-QGFRGLNLGDGKENCADWNSNNIN 172

Query: 170 XXXDKEMQEVSD-HASPTSVIESNNGNVEVERYSLPKSISVRSKGYWKWPHPVPPAATTN 228
               KE+QE S+   SPTSVIE NNG VE ER+SLPKSISVRS GY K   P P   T N
Sbjct: 173 NNN-KELQEASESDESPTSVIE-NNG-VETERFSLPKSISVRSNGYLKLA-PPPAVVTNN 228

Query: 229 NACRPKNATRPRASSTPSDTVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGAC 288
           NACR K ATR RASST SDTVQKV+VRGG+KEEEPLEMVVYNQGMFKTELCNKWQETG C
Sbjct: 229 NACRTKGATRSRASSTQSDTVQKVFVRGGQKEEEPLEMVVYNQGMFKTELCNKWQETGTC 288

Query: 289 PYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLSGVVCPYGHRCHFRHALTEQEKAVSQS 348
           PYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVL+GVVCPYGHRCHFRHALTEQEKA+SQ 
Sbjct: 289 PYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAMSQP 348

Query: 349 KPRTTKMER 357
           KPR+ K+ER
Sbjct: 349 KPRSMKLER 357


>Medtr5g090040.1 | zinc finger C-x8-C-x5-C-x3-H type family protein
           | HC | chr5:39179716-39170685 | 20130731
          Length = 159

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 67/82 (81%), Gaps = 9/82 (10%)

Query: 264 LEMVVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLSG 323
           L   VYNQGMFKT         G CPYGDHCQFAHGIGELR +IRHPRYKTEVCRMVL+G
Sbjct: 78  LRWFVYNQGMFKT---------GTCPYGDHCQFAHGIGELRQMIRHPRYKTEVCRMVLAG 128

Query: 324 VVCPYGHRCHFRHALTEQEKAV 345
           VVCP GHRCHFRHALTEQEKA+
Sbjct: 129 VVCPCGHRCHFRHALTEQEKAM 150


>Medtr3g050390.1 | zinc finger CCCH domain protein | LC |
           chr3:19845557-19847314 | 20130731
          Length = 242

 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 22/90 (24%)

Query: 273 MFKTELCNKWQETGACPYGDHCQFAHGIGELR--PV----IRHPR--------------- 311
            FKT +C+K++  G CP G+HC +AHG+GE+R  P     +  PR               
Sbjct: 34  FFKTRICHKFK-FGNCPKGEHCTYAHGVGEIRQPPANWKDLAGPRNEEWMQFLDDDEKII 92

Query: 312 YKTEVCRMVLSGVVCPYGHRCHFRHALTEQ 341
           +K  +C+   +G  CPYG  C F H L E 
Sbjct: 93  HKMGLCKKYYNGEECPYGDTCIFLHRLRED 122


>Medtr4g094292.1 | zinc finger C-x8-C-x5-C-x3-H type protein | HC |
           chr4:37633491-37637948 | 20130731
          Length = 377

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 273 MFKTELCNKWQETGACPYGDHCQFAHGIGELRPVIRHPRYKTE--VCRMVLSGVVCPYGH 330
           +FK E+C  W+E+G C Y   CQFAHG  EL       + K+E  + R+ +   +C YG 
Sbjct: 185 LFKKEVCRAWEESGNCRYNSKCQFAHGREELHLSRLSMKSKSEAQMGRLSMRAGLCLYGP 244

Query: 331 RCHFRHALTEQEKAVSQSKPRTTKMER 357
                  +  +   V++S P  T++ R
Sbjct: 245 DSR----ILPESAEVAESGPVVTRLAR 267


>Medtr8g066730.1 | zinc finger CCCH domain protein | HC |
           chr8:27741156-27744224 | 20130731
          Length = 376

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 274 FKTELCNKWQETGACPYGDHCQFAHGIGEL 303
           +KT +CNKW+ TG CP+G+ C FAHG  EL
Sbjct: 257 WKTRICNKWEMTGYCPFGNKCHFAHGATEL 286