Miyakogusa Predicted Gene

Lj5g3v2169490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2169490.1 CUFF.56826.1
         (416 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g109100.1 | origin recognition complex subunit 4 | HC | ch...   700   0.0  

>Medtr1g109100.1 | origin recognition complex subunit 4 | HC |
           chr1:49293655-49298886 | 20130731
          Length = 412

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/414 (84%), Positives = 383/414 (92%), Gaps = 6/414 (1%)

Query: 1   MEGEDHKMKTLNLLRSRICDPKFIFSDSSSDEGNYSKLKFMISSSVTEACNNSILLLGPR 60
           MEGE+     LNLLRSRICD  FIF DSS  + NYSKLKFMIS+SV EACNNSILLLGPR
Sbjct: 1   MEGEN----ALNLLRSRICDTGFIFKDSS--DTNYSKLKFMISTSVAEACNNSILLLGPR 54

Query: 61  GSGKLAVLELVIQDLFQQYPESLSLIRLNGFLHCDDISAFKEIARQLCMDHQLLFSKSAS 120
           GSGKLAVL+LV+QDL  QYP+S+S++RLNG LHCDDISAFKEIARQLCM+HQLLFSK+AS
Sbjct: 55  GSGKLAVLDLVLQDLLIQYPDSISVVRLNGLLHCDDISAFKEIARQLCMEHQLLFSKAAS 114

Query: 121 FDDNSQFMVAMLKECGLAHKTIIFILDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGIS 180
           FDDNSQFMVA+LKECGLAHKT+IFILDEFDLFAQGKQRLLYSLLDAMQSV+SQAVV+GIS
Sbjct: 115 FDDNSQFMVAVLKECGLAHKTVIFILDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVLGIS 174

Query: 181 CRLDADQLLEKRVRSRFSHRKLLFLPPSIEDSQRLLVHMLNLPIDSSFPHDYAVEFNRKV 240
           CRLDADQLLEKRVRSRFSHRKLLFLPPSIEDSQRLLVHML LPIDSS P+DYAVEFN+KV
Sbjct: 175 CRLDADQLLEKRVRSRFSHRKLLFLPPSIEDSQRLLVHMLTLPIDSSLPYDYAVEFNKKV 234

Query: 241 QNIIEDRRFKDTFNKYLSLDSSVKHLLRFLFCAVSHMDLKTGFLSPENFETAFSSIQRQP 300
           QNIIED+RFK+ FNK L+ DSSVKHLL+FLF AVSHMDL+TGFLS ENFETAF++IQRQP
Sbjct: 235 QNIIEDKRFKEIFNKLLNFDSSVKHLLKFLFYAVSHMDLQTGFLSRENFETAFTNIQRQP 294

Query: 301 KLECLKSCSILELYILVCMKRLEVKEQSLCNFNAVMKEYKSVHDSFKTADYYARNVCLRA 360
           KLECLK+CS+LELYILV MKRLEVKE+SLCNFNAVMKEYK++HDSF+T+DYYARNVCLRA
Sbjct: 295 KLECLKNCSVLELYILVSMKRLEVKEKSLCNFNAVMKEYKNIHDSFQTSDYYARNVCLRA 354

Query: 361 FEHLIHRELICYTDNRGQSLSAEFRPAKLLISPPELHQGLKAYPSCPPILQKLT 414
           FEHL+HREL+C+TDNRG SLS EFRP KLLIS  ELHQGLKAY SCP ILQKL 
Sbjct: 355 FEHLLHRELLCFTDNRGHSLSVEFRPVKLLISSAELHQGLKAYQSCPAILQKLV 408