Miyakogusa Predicted Gene

Lj5g3v2123620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2123620.1 Non Characterized Hit- tr|B9S6V9|B9S6V9_RICCO
Amino acid transporter, putative OS=Ricinus communis G,59.21,1e-18,
,CUFF.56736.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g024300.1 | transmembrane amino acid transporter family pr...   105   1e-23
Medtr8g073340.1 | transmembrane amino acid transporter family pr...    88   2e-18

>Medtr5g024300.1 | transmembrane amino acid transporter family
           protein | HC | chr5:9783925-9781692 | 20130731
          Length = 422

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 63/76 (82%), Gaps = 2/76 (2%)

Query: 1   MIVLSQAGFCVNFLIFLATSLGFLTNNAAGDTVPVFLGLTLKVLFLWGCLPFQLGLNSMP 60
           MIVLSQAGFCV++LIF++++L FLT     DT+  F+GLT K L+LWGC PFQLGLNS+ 
Sbjct: 120 MIVLSQAGFCVSYLIFISSTLSFLTAGDETDTI--FIGLTAKSLYLWGCFPFQLGLNSIK 177

Query: 61  TLTHLVPLSMFADVVD 76
           TLTHL PLS+FADVVD
Sbjct: 178 TLTHLAPLSIFADVVD 193


>Medtr8g073340.1 | transmembrane amino acid transporter family
           protein | HC | chr8:31009180-31010421 | 20130731
          Length = 413

 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 58/76 (76%), Gaps = 3/76 (3%)

Query: 1   MIVLSQAGFCVNFLIFLATSLGFLTNNAAGDTVPVFLGLTLKVLFLWGCLPFQLGLNSMP 60
           M+ L Q GFCV++LIF++T+L  L++N    ++   LG + KV F+W C PFQLGLN++P
Sbjct: 112 MVFLMQCGFCVSYLIFISTTLIHLSHNTNSSSL---LGFSPKVFFIWACFPFQLGLNAIP 168

Query: 61  TLTHLVPLSMFADVVD 76
           +LTHL PLS+FADVVD
Sbjct: 169 SLTHLAPLSIFADVVD 184