Miyakogusa Predicted Gene
- Lj5g3v2113410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2113410.1 Non Characterized Hit- tr|D8U3J1|D8U3J1_VOLCA
Putative uncharacterized protein (Fragment) OS=Volvox
,39.18,6e-18,DUF3611,Protein of unknown function DUF3611;
seg,NULL,CUFF.56722.1
(289 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g107450.1 | TIC21 | HC | chr1:48749565-48746254 | 20130731 389 e-108
Medtr1g107450.2 | TIC21 | HC | chr1:48749565-48746254 | 20130731 389 e-108
>Medtr1g107450.1 | TIC21 | HC | chr1:48749565-48746254 | 20130731
Length = 283
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/289 (74%), Positives = 226/289 (78%), Gaps = 6/289 (2%)
Query: 1 MQTLLLPAPCAGKFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MQTLL PAPC+GKFT
Sbjct: 1 MQTLLSPAPCSGKFTAAPLSISAISVPRLPRTILKQNSTPSLPLKLNSSSPSFSSFIS-- 58
Query: 61 XXXXHRPRNLPFTVTASSQVSPAFTPSNGESEKAKLDQVAKRLEKTARYFKRLGSLGFWG 120
HR LPFT TASSQ SPAF PSN ESEKAKLDQVAKRLEKTAR+FKRLGSLGFWG
Sbjct: 59 ----HRSWKLPFTATASSQSSPAFAPSNEESEKAKLDQVAKRLEKTARHFKRLGSLGFWG 114
Query: 121 QLVCTVISAVILSFSVVVTGKVTSPATFYATAGGIVAGFISVFWSFGYIRLSEKLRKTAN 180
QLVCT++SAVILSFSVVVTGKVTSPATFYATAGGI A FISVFWSFGYIRLSE+LR+TAN
Sbjct: 115 QLVCTIVSAVILSFSVVVTGKVTSPATFYATAGGIAAAFISVFWSFGYIRLSERLRRTAN 174
Query: 181 QPTKAPPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAKALTSAANPYYQGIAPGS 240
PTKAPPR+DVVKSLQNGI +NLLGMG+AILGMQATVG LVAKALT++ANPYYQGIAPGS
Sbjct: 175 DPTKAPPRSDVVKSLQNGIALNLLGMGSAILGMQATVGFLVAKALTTSANPYYQGIAPGS 234
Query: 241 SPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSEALPFPKFA 289
SPVLALDVFLVQASANTILSHFLGL+FSLELLRSVTLPPSEALPF KFA
Sbjct: 235 SPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSEALPFLKFA 283
>Medtr1g107450.2 | TIC21 | HC | chr1:48749565-48746254 | 20130731
Length = 283
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 214/289 (74%), Positives = 226/289 (78%), Gaps = 6/289 (2%)
Query: 1 MQTLLLPAPCAGKFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MQTLL PAPC+GKFT
Sbjct: 1 MQTLLSPAPCSGKFTAAPLSISAISVPRLPRTILKQNSTPSLPLKLNSSSPSFSSFIS-- 58
Query: 61 XXXXHRPRNLPFTVTASSQVSPAFTPSNGESEKAKLDQVAKRLEKTARYFKRLGSLGFWG 120
HR LPFT TASSQ SPAF PSN ESEKAKLDQVAKRLEKTAR+FKRLGSLGFWG
Sbjct: 59 ----HRSWKLPFTATASSQSSPAFAPSNEESEKAKLDQVAKRLEKTARHFKRLGSLGFWG 114
Query: 121 QLVCTVISAVILSFSVVVTGKVTSPATFYATAGGIVAGFISVFWSFGYIRLSEKLRKTAN 180
QLVCT++SAVILSFSVVVTGKVTSPATFYATAGGI A FISVFWSFGYIRLSE+LR+TAN
Sbjct: 115 QLVCTIVSAVILSFSVVVTGKVTSPATFYATAGGIAAAFISVFWSFGYIRLSERLRRTAN 174
Query: 181 QPTKAPPRADVVKSLQNGIVVNLLGMGAAILGMQATVGLLVAKALTSAANPYYQGIAPGS 240
PTKAPPR+DVVKSLQNGI +NLLGMG+AILGMQATVG LVAKALT++ANPYYQGIAPGS
Sbjct: 175 DPTKAPPRSDVVKSLQNGIALNLLGMGSAILGMQATVGFLVAKALTTSANPYYQGIAPGS 234
Query: 241 SPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPPSEALPFPKFA 289
SPVLALDVFLVQASANTILSHFLGL+FSLELLRSVTLPPSEALPF KFA
Sbjct: 235 SPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSEALPFLKFA 283