Miyakogusa Predicted Gene

Lj5g3v2112020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2112020.1 Non Characterized Hit- tr|I1NG04|I1NG04_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,80.88,0,WD40
repeat-like,WD40-repeat-containing domain; RNI-like,NULL; WD40,WD40
repeat; no description,NULL,CUFF.56691.1
         (806 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g106905.1 | transducin/WD-like repeat-protein | HC | chr1:...  1290   0.0  
Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protei...    58   4e-08
Medtr8g092620.4 | MAP kinase organizer 1 | HC | chr8:38744844-38...    56   1e-07
Medtr8g092620.3 | MAP kinase organizer 1 | HC | chr8:38744844-38...    56   1e-07
Medtr8g092620.2 | MAP kinase organizer 1 | HC | chr8:38744844-38...    55   2e-07
Medtr8g092620.1 | MAP kinase organizer 1 | HC | chr8:38745356-38...    55   2e-07
Medtr4g119620.1 | transducin/WD40 repeat protein | HC | chr4:495...    52   2e-06
Medtr2g012630.1 | katanin p80 WD40 repeat subunit B1-like protei...    52   2e-06
Medtr2g012630.2 | katanin p80 WD40 repeat subunit B1-like protei...    52   2e-06
Medtr7g086360.1 | U5 small nuclear ribonucleoprotein 40 kDa-like...    51   5e-06

>Medtr1g106905.1 | transducin/WD-like repeat-protein | HC |
           chr1:48393181-48400911 | 20130731
          Length = 801

 Score = 1290 bits (3339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/808 (78%), Positives = 689/808 (85%), Gaps = 9/808 (1%)

Query: 1   MAVDIQTLEDRYIGFCRSHGASPSPAILSSFYKAEVKKSRQELCVLEIVIDDICDFDFAP 60
           MAVDI TLE+RYI  CR HG  P  AILSSF+KAE KKS QEL VL+I+ID++ D DFAP
Sbjct: 1   MAVDILTLENRYIDSCRRHGVLPHAAILSSFFKAEGKKSHQELIVLDILIDELKDIDFAP 60

Query: 61  LLDTCMNLDASEIEAVDVRNESSCLLNGECAFSLLRAINQKLRVVELQDVSFGNDFLRDI 120
           LL+ C +LD +E+EAVDV NES C+L+GE    L+RA+ QKLR+VEL+D+SF  DF+RDI
Sbjct: 61  LLEICTSLDTTEVEAVDVHNESPCVLSGEYVLPLMRAVKQKLRIVELRDMSFAKDFVRDI 120

Query: 121 SQRGLACQVLTLRSSRFRKLNLMGEFMHMHTLNLDFSSSLTSFDEDCFNCMPNLRCLSMC 180
           SQRGLACQVLT+RS  FRKL+LMGEF+HMHTLNLDFSS LTSF+EDCFNCMPNL CLSMC
Sbjct: 121 SQRGLACQVLTIRSWHFRKLSLMGEFIHMHTLNLDFSSYLTSFEEDCFNCMPNLTCLSMC 180

Query: 181 ETRITNLWTTVAALSKLPSLVELRFQYWQYCXXXXXXXXXXXXXXXXTADFNLLERVPFV 240
           ETRI+NLWTT+AALSKLPSLV+LRFQYWQYC                TADF  L+RVPF+
Sbjct: 181 ETRISNLWTTIAALSKLPSLVQLRFQYWQYCNDTGTSFTSSSGKSDATADFRQLDRVPFI 240

Query: 241 GEFCTDTRELTDPN--AEDPLRNFYSFGEEAIDHDIQSMVEDSSDDSEIGCTRHHHRSWL 298
           GE   DT ELTD N   EDPLRN YSF +E + +D+QSMVEDSSDDSEI  T HH R+WL
Sbjct: 241 GESRIDTTELTDLNISVEDPLRNVYSF-DEVMSYDVQSMVEDSSDDSEIDLTNHHPRNWL 299

Query: 299 SDVFPGWNLQVPLQNEFTLRNEDEEDSSQGSFTGHIADVSMKYMSRHASPICHEKHYREF 358
           SDVFP W LQ+P       ++E+E +SS  SFT +  DVSMKYMSRHASPIC +KHYREF
Sbjct: 300 SDVFPRWGLQMPP------KSENEVESSSRSFTENGVDVSMKYMSRHASPICQQKHYREF 353

Query: 359 MIASLPNLKNLDNVPIRKTDKERATGIFSEYFEYLPYRWKHKESVVSILQKREIKSGHIK 418
           MIASLPNLK+LDN+PIR  DKE A GIFS+YFEYLPYRWK +ESV+SIL KRE KSG IK
Sbjct: 354 MIASLPNLKSLDNLPIRNIDKESAAGIFSQYFEYLPYRWKSRESVLSILHKRETKSGRIK 413

Query: 419 VQSSKRSPPYPSGNSQYFYTRSLSAAKLGSSTWPFLHPLSLLGCDLGKGFRPRQFEYHPS 478
           VQSSK  P +PSG SQ+FYTRSLSAAKLGSSTWP LHPLS+ G DL KGFRPRQFEYHPS
Sbjct: 414 VQSSKCRPSHPSGTSQHFYTRSLSAAKLGSSTWPSLHPLSVSGFDLDKGFRPRQFEYHPS 473

Query: 479 DSSLMVFGTLDGEVVVINHENEHIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 538
           DSSLMVFGTLDGEVVVINHE+E IV+YIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLK
Sbjct: 474 DSSLMVFGTLDGEVVVINHESERIVNYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGSLK 533

Query: 539 LYDIHQVPRKITSIYGNSGCVTFDEFDQLTSVHVNATDELFLASGYSKNVALYDINSGKR 598
           LYDI+ +PRKIT +YGNSGCVTFDEFDQLTSVHVNATDELFLASGYS+NVALYDINSGKR
Sbjct: 534 LYDINHIPRKITGLYGNSGCVTFDEFDQLTSVHVNATDELFLASGYSRNVALYDINSGKR 593

Query: 599 LQVFTDMHQGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIHPCFTASSSKGNVMVC 658
           LQVFTDMH+GHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPI PCFTASSSKGNVMVC
Sbjct: 594 LQVFTDMHRGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIQPCFTASSSKGNVMVC 653

Query: 659 FSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCD 718
           FSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCD
Sbjct: 654 FSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSYYMNGRDYIISGSCD 713

Query: 719 EHIVRICCAQTGRRLRDISLEGRSLGSSMFVQSLRGDPFRDFNMSVLAAYMRPGSKSEIV 778
           EHIVRICCAQTGRRLRDISLEG+SLG SMFVQSLRGDPFRDFNMSVL AYMRPGS SEIV
Sbjct: 714 EHIVRICCAQTGRRLRDISLEGKSLGRSMFVQSLRGDPFRDFNMSVLGAYMRPGSNSEIV 773

Query: 779 KVNLLXXXXXXXXXXXXQRPCLSHSMGA 806
           K+NLL               C S+ MGA
Sbjct: 774 KINLLACNGRAKDDSDDHPVCPSNIMGA 801


>Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protein |
           HC | chr6:91770-77124 | 20130731
          Length = 760

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 522 KKYPSKLIAGSDNGSLKLYDIHQVPRKITSIYGNSGCVTFDEFDQLTSVHVNATDELFLA 581
           +K    L+ G ++  + L+ I + P  I S+ G+S  +         SV+ ++++ L  A
Sbjct: 26  RKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHSSGID--------SVNFDSSEVLVAA 76

Query: 582 SGYSKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKP 641
              S  + L+D+   K ++  T  H+ +   V F       FA+ S D ++K+WD+R+K 
Sbjct: 77  GAASGTIKLWDLEEAKIVRTLTG-HRSNCTSVDFHPFG-EFFASGSLDTNLKIWDIRKKG 134

Query: 642 IHPCFTASSSKGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRL 685
               +    ++G   + F+PD +++++   DN V+ +    G+L
Sbjct: 135 CIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177


>Medtr8g092620.4 | MAP kinase organizer 1 | HC |
           chr8:38744844-38740226 | 20130731
          Length = 229

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 566 QLTSVHVNATDELFLASGYSKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFAT 625
           ++  VHV   +    + G  + V  +D+ +G+ ++ F   H G +N VKF  +S S+  +
Sbjct: 62  EVRDVHVTTDNSKLCSCGGDRQVYYWDVATGRVIRKFRG-HDGEVNGVKFNEYS-SVVVS 119

Query: 626 SSFDQDVKMWDLRQKPIHPCFTASSSKGNVM-VCFSPDDQYILASAVDNEVRQFLAVDGR 684
           + +DQ ++ WD R     P     +   +VM VC +  +  I+  +VD  VR F    GR
Sbjct: 120 AGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTE--IIGGSVDGTVRTFDMRIGR 177


>Medtr8g092620.3 | MAP kinase organizer 1 | HC |
           chr8:38744844-38740226 | 20130731
          Length = 229

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 566 QLTSVHVNATDELFLASGYSKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFAT 625
           ++  VHV   +    + G  + V  +D+ +G+ ++ F   H G +N VKF  +S S+  +
Sbjct: 62  EVRDVHVTTDNSKLCSCGGDRQVYYWDVATGRVIRKFRG-HDGEVNGVKFNEYS-SVVVS 119

Query: 626 SSFDQDVKMWDLRQKPIHPCFTASSSKGNVM-VCFSPDDQYILASAVDNEVRQFLAVDGR 684
           + +DQ ++ WD R     P     +   +VM VC +  +  I+  +VD  VR F    GR
Sbjct: 120 AGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTE--IIGGSVDGTVRTFDMRIGR 177


>Medtr8g092620.2 | MAP kinase organizer 1 | HC |
           chr8:38744844-38740226 | 20130731
          Length = 299

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 566 QLTSVHVNATDELFLASGYSKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFAT 625
           ++  VHV   +    + G  + V  +D+ +G+ ++ F   H G +N VKF N   S+  +
Sbjct: 62  EVRDVHVTTDNSKLCSCGGDRQVYYWDVATGRVIRKFRG-HDGEVNGVKF-NEYSSVVVS 119

Query: 626 SSFDQDVKMWDLRQKPIHPCFTASSSKGNVM-VCFSPDDQYILASAVDNEVRQFLAVDGR 684
           + +DQ ++ WD R     P     +   +VM VC +  +  I+  +VD  VR F    GR
Sbjct: 120 AGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTE--IIGGSVDGTVRTFDMRIGR 177


>Medtr8g092620.1 | MAP kinase organizer 1 | HC |
           chr8:38745356-38740545 | 20130731
          Length = 330

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 566 QLTSVHVNATDELFLASGYSKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFAT 625
           ++  VHV   +    + G  + V  +D+ +G+ ++ F   H G +N VKF  +S S+  +
Sbjct: 69  EVRDVHVTTDNSKLCSCGGDRQVYYWDVATGRVIRKFRG-HDGEVNGVKFNEYS-SVVVS 126

Query: 626 SSFDQDVKMWDLRQKPIHPCFTASSSKGNVM-VCFSPDDQYILASAVDNEVRQFLAVDGR 684
           + +DQ ++ WD R     P     +   +VM VC +  +  I+  +VD  VR F    GR
Sbjct: 127 AGYDQSLRAWDCRSHSTEPIQIIDTFADSVMSVCLTKTE--IIGGSVDGTVRTFDMRIGR 184


>Medtr4g119620.1 | transducin/WD40 repeat protein | HC |
           chr4:49575751-49578750 | 20130731
          Length = 326

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 25/220 (11%)

Query: 528 LIAGSDNGSLKLYDIHQVPRKITSIYGNSG---CVTFDEFDQLTSVHVNATDELFLASGY 584
           L++ SD+ +++L+D+      + +++G++    CV F           N    + ++  +
Sbjct: 93  LVSASDDKTIRLWDV-PTGSLVKTLHGHTNYVFCVNF-----------NPQSNVIVSGSF 140

Query: 585 SKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKPIHP 644
            + V ++D+ SGK L+V    H   +  V F N   ++  +SS+D   ++WD        
Sbjct: 141 DETVRVWDVKSGKCLKVLP-AHSDPVTAVDF-NRDGTLIVSSSYDGLCRIWDASTGHCIK 198

Query: 645 CFTASSSKGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRLHLVFDIAPTESSQNYTRSY 704
                 +     V FSP+ ++IL   +DN +R +    G+    +      S    + S+
Sbjct: 199 TLIDDENPPVSYVKFSPNAKFILVGTLDNNLRLWNYSTGKFLKTY-TGHVNSKYCISSSF 257

Query: 705 YMNGRDYIISGSCDEHIVRICCAQTGRRLRDI--SLEGRS 742
            +    Y++ GS D      C    G + R I   LEG +
Sbjct: 258 SITNGKYVVGGSEDN-----CIYLWGLQSRKIVQKLEGHT 292


>Medtr2g012630.1 | katanin p80 WD40 repeat subunit B1-like protein |
           HC | chr2:3190941-3179834 | 20130731
          Length = 1111

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 528 LIAGSDNGSLKLYDIHQVPRKITSIYGNSGCVTFDEFDQLTSVHVNATDELFLASGYSKN 587
            + G D+  + L+ I + P  ++S+ G++  V         SV  ++ + L LA   S  
Sbjct: 31  FVTGGDDHKVNLWTIGK-PTSLSSLSGHTSPVE--------SVTFDSGEVLVLAGSTSGV 81

Query: 588 VALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKP-IHPCF 646
           + L+D+   K ++     H+ +   V+F       FA+ S D ++K+WD R+K  IH   
Sbjct: 82  IRLWDLEESKMVRTVAG-HRSNCTSVEFHPFG-EFFASGSMDTNLKIWDNRKKGCIH--T 137

Query: 647 TASSSKGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRL 685
               S+G   + F+PD +++++   DN V+ +    G+L
Sbjct: 138 YKGHSQGISTIKFTPDGRWVVSGGFDNVVKVWDLTAGKL 176


>Medtr2g012630.2 | katanin p80 WD40 repeat subunit B1-like protein |
           HC | chr2:3190921-3179833 | 20130731
          Length = 1030

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 528 LIAGSDNGSLKLYDIHQVPRKITSIYGNSGCVTFDEFDQLTSVHVNATDELFLASGYSKN 587
            + G D+  + L+ I + P  ++S+ G++  V         SV  ++ + L LA   S  
Sbjct: 31  FVTGGDDHKVNLWTIGK-PTSLSSLSGHTSPVE--------SVTFDSGEVLVLAGSTSGV 81

Query: 588 VALYDINSGKRLQVFTDMHQGHINVVKFANHSPSIFATSSFDQDVKMWDLRQKP-IHPCF 646
           + L+D+   K ++     H+ +   V+F       FA+ S D ++K+WD R+K  IH   
Sbjct: 82  IRLWDLEESKMVRTVAG-HRSNCTSVEFHPFG-EFFASGSMDTNLKIWDNRKKGCIH--T 137

Query: 647 TASSSKGNVMVCFSPDDQYILASAVDNEVRQFLAVDGRL 685
               S+G   + F+PD +++++   DN V+ +    G+L
Sbjct: 138 YKGHSQGISTIKFTPDGRWVVSGGFDNVVKVWDLTAGKL 176


>Medtr7g086360.1 | U5 small nuclear ribonucleoprotein 40 kDa-like
           protein | HC | chr7:33509053-33512350 | 20130731
          Length = 345

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 466 KGFRPRQFEYH-PSDSSLMVFGTLDGEVVVINHE-NEHIVSYIPSLGAMNSVLGLCWLKK 523
           KG +    + H  SD + ++  + D  + + + E  + I   +  L  +NS    C  ++
Sbjct: 95  KGHKNAVLDLHWTSDGTQIISASPDKTLRLWDTETGKQIKKMVEHLSYVNSC---CPTRR 151

Query: 524 YPSKLIAGSDNGSLKLYDIHQVPRKITSIYGNSGCVTFDEFDQLTSVHVNATDELFLASG 583
            P  +++GSD+G+ KL+D+ Q               TF +  Q+T+V  +   +     G
Sbjct: 152 GPPLVVSGSDDGTAKLWDMRQ----------RGSIQTFPDKYQITAVSFSDASDKIYTGG 201

Query: 584 YSKNVALYDINSGKRLQVFTDMHQGHINVVKFANHSP--SIFATSSFDQDVKMWDLRQ-K 640
              +V ++D+  G+         QGH +++     SP  S   T+  D  + +WD+R   
Sbjct: 202 IDNDVKIWDLRKGEVTMTL----QGHQDMITSMQLSPDGSYLLTNGMDCKLCIWDMRPYA 257

Query: 641 PIHPCFTASSS-----KGNVMVC-FSPDDQYILASAVDNEV 675
           P + C           + N++ C +SPD   + A + D  V
Sbjct: 258 PQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMV 298