Miyakogusa Predicted Gene

Lj5g3v2110820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2110820.1 CUFF.56671.1
         (360 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g106765.1 | transcriptional regulator of RNA polII, SAGA, ...   461   e-130
Medtr1g009690.1 | transcriptional regulator of RNA polII, SAGA, ...   202   3e-52
Medtr1g009710.1 | transcriptional regulator of RNA polII, SAGA, ...   193   2e-49
Medtr4g095490.1 | transcriptional regulator of RNA polII, SAGA, ...   148   6e-36

>Medtr1g106765.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:48303372-48305404 | 20130731
          Length = 358

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/358 (65%), Positives = 285/358 (79%), Gaps = 4/358 (1%)

Query: 1   MTVPKRSYIRVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRE 60
           MTVPK++Y R++TL+LKA+IV+KVG QRAG YF QLG+L+SSKISK+EFD++CI TIG+E
Sbjct: 1   MTVPKQNYTRINTLELKAVIVKKVGNQRAGTYFDQLGKLVSSKISKAEFDKICITTIGKE 60

Query: 61  NIPLHNQFIKAILKNACSSKVPPPRGPARIGSALSGRDSNGLQQSSVQIPYGDAVPSLLR 120
           N+PLHNQ I+AILKN C SKVPP R  A+    L+ +DSN  Q  S+Q+ YGDA P  LR
Sbjct: 61  NVPLHNQLIRAILKNVCLSKVPPHRSSAKKERVLNAKDSNRQQSRSIQMQYGDAFPPSLR 120

Query: 121 KDGSVAPREQKFKGRRNGFGRLGKPQSLTPEKLIHKAQQQQSATELNSLGSRPPISVEEG 180
           + GS+A  E    GR++  G+LGKP++L  + LI+K  +QQSATELNSLGSRPPISVE+G
Sbjct: 121 RGGSLATCEGMLTGRQSALGQLGKPRNLGSKDLIYKTPEQQSATELNSLGSRPPISVEDG 180

Query: 181 EEVEQM--ARSPSIQSRSPVTAPLGISMNFGHGRKLLSNVLGSKCHP-DTCQSSGDLPDT 237
           EEVEQ+  + SPSIQS+SPV APLG+SMN G+GR  LS     + HP +TC S+G LPDT
Sbjct: 181 EEVEQLGGSPSPSIQSKSPVAAPLGVSMNSGYGRSPLSIASSCRKHPRETCFSNGYLPDT 240

Query: 238 RSLRSRLEQKLEKEGLTVTVDCVNLLNNALDSYLKRLIESSIGL-AGSRSGSEYLRMRNR 296
            SLRSRLEQKL+KEGLTVTVDCVNLLNNA+DSYLKRL+ESS GL +G R G+E+ R  N 
Sbjct: 241 SSLRSRLEQKLKKEGLTVTVDCVNLLNNAMDSYLKRLVESSTGLSSGLRFGNEHRRQGNG 300

Query: 297 QSVTGSNVLLPARYMQTATQSAGVSVSDFRVAMELNPQVLGPDWPIQLEKICICASEE 354
           QS+  SN+L P RYMQTATQS+  S+ DFRVAMELNPQVLGPDWP QLEKICI AS E
Sbjct: 301 QSIADSNILQPRRYMQTATQSSCASLLDFRVAMELNPQVLGPDWPTQLEKICIRASNE 358


>Medtr1g009690.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:1441169-1438514 | 20130731
          Length = 420

 Score =  202 bits (515), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 152/423 (35%), Positives = 221/423 (52%), Gaps = 88/423 (20%)

Query: 10  RVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQFI 69
           R++ ++LK  IV+++G +++ +YF  L R LS K+SK+EFD++C R +GREN+PLHN FI
Sbjct: 8   RINLVELKVQIVKRIGVEKSKRYFYYLNRFLSHKLSKNEFDKLCFRVLGRENLPLHNYFI 67

Query: 70  KAILKNACSSKVPP---PRGPARIGSALSGRD-----------SNG-LQQSSVQIPYGDA 114
           K+I KNAC +K PP   P GP++ G+ ++              +NG  Q  +V + + + 
Sbjct: 68  KSIFKNACQAKTPPLVQPSGPSKSGARVTNFSPGVEDGHEQSVANGNFQNHNVSV-WSNG 126

Query: 115 V----PSLLRKDGSVAPREQKFKGRRNGFGRLGKPQS---------------------LT 149
           V    P +LR       R++K K R +  G  GK  S                     LT
Sbjct: 127 VLPVSPRMLRS----GIRDRKLKDRPSPLGPNGKVDSVAHHSMASEDSGSKVDMENGTLT 182

Query: 150 PEKLIHKAQQQQSATEL--NSLGS-------RPPI---------SVEEGEEVEQMARSPS 191
           P     + Q  Q    L  N++G        +P           +VE+GEEVEQ+ R   
Sbjct: 183 PCDYQRRTQHLQEVAGLPKNAMGDAILGLAEKPRTHVNGLTQISTVEDGEEVEQLNRLGF 242

Query: 192 IQSRSPVTAPLGI---SMNFGHGRKLL-SNVLGSKCHPDTCQSSGDLPDTRSLRSRLEQK 247
             +R+P+ APLGI   S + G  RK L +N  G      +C  SG L DT +LR R+EQ 
Sbjct: 243 --NRNPLIAPLGIPYCSASVGGARKALPANSTGDFV---SCCDSGRLSDTDTLRRRMEQI 297

Query: 248 LEKEGLT-VTVDCVNLLNNALDSYLKRLIESSIGLAGSRSGSEYLRMR-NRQSVTGS--N 303
              +GL  V+ +C  +LN+ LD YLKRLI+SS+ L G+RS +E  ++  ++Q V     N
Sbjct: 298 AMVQGLVGVSPECATVLNSVLDVYLKRLIKSSVDLVGTRSTNEPTKLPISKQQVQEKLIN 357

Query: 304 VLLPARYMQTATQS------------AGVSVSDFRVAMELNPQVLGPDWPIQLEKICICA 351
            +LP  ++                    VS+ DF+VAMELNPQ LG DWP+QLEKI + +
Sbjct: 358 GMLPNNHLHVHNTGRMAEPQLEHRPQFSVSLHDFKVAMELNPQQLGEDWPLQLEKISMQS 417

Query: 352 SEE 354
            EE
Sbjct: 418 FEE 420


>Medtr1g009710.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:1448833-1451707 | 20130731
          Length = 420

 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 153/421 (36%), Positives = 214/421 (50%), Gaps = 84/421 (19%)

Query: 10  RVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLHNQFI 69
           R+D  +LK  IV+K+G  ++ +YF  L R LS K+SKSEFD++C R +GREN+PLHN FI
Sbjct: 8   RIDLGELKVQIVKKIGPDKSKRYFYYLNRFLSQKLSKSEFDKLCFRVLGRENLPLHNHFI 67

Query: 70  KAILKNACSSKVPPPRGP-------ARIGSALSGRDSNGLQQSSVQIPYGDA-------V 115
           K+ILKNA  +K PP   P       AR+ + LS    +G +QS+      +A       +
Sbjct: 68  KSILKNALQAKTPPTVHPSDSSKSGARV-TNLSPGGEDGHEQSAASFQNHNASIWTNGVL 126

Query: 116 PSLLRKDGSVAPREQKFKGRRNGFGRLGKPQS---------------------LTPEKLI 154
           P   RK  S   R++K K R +  G  GK  S                     LTP    
Sbjct: 127 PVSPRKLRS-GMRDRKLKDRPSPLGPNGKVDSVAHQYTATEDSGSKVDMENGTLTPCDYQ 185

Query: 155 HKAQQQQSATELNSL------------------GSRPPISVEEGEEVEQMARSPSIQSRS 196
              Q  Q  +EL  +                  G     +VE+GEE EQ+ R     +R+
Sbjct: 186 RPTQHLQVVSELPEIVMGDGMQGISENQRIRGKGLTERSTVEDGEEAEQLNRLNF--ARN 243

Query: 197 PVTAPLGI---SMNFGHGRKLLSNVLGSKCHPDTCQSSGDLPDTRSLRSRLEQKLEKEGL 253
           P+ APLGI   S + G  RK L   + S     +C  SG L DT +LR R+EQ    +GL
Sbjct: 244 PLIAPLGIPYCSASVGGARKALP--VNSAGDFVSCSDSGRLSDTDTLRRRMEQIAMVQGL 301

Query: 254 -TVTVDCVNLLNNALDSYLKRLIESSIGLAGSRSGSEYLRMR---NRQSVTGS--NVLLP 307
             V+ +C ++LN+ LD YLKRLI+SS+ L G+RS +E    +   ++  + G   N +LP
Sbjct: 302 GGVSPECASVLNSVLDVYLKRLIKSSVDLVGARSANEPTTTKFPVSKPQIPGKLINGMLP 361

Query: 308 ARYMQTATQSAG--------------VSVSDFRVAMELNPQVLGPDWPIQLEKICICASE 353
             ++    QSAG              VS+ DF+VAMELNP+ LG DWP+Q EKI + + E
Sbjct: 362 NHHLH--VQSAGRLAESEPEHRSQFSVSLHDFKVAMELNPKQLGEDWPLQSEKISMQSFE 419

Query: 354 E 354
           +
Sbjct: 420 K 420


>Medtr4g095490.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | LC | chr4:39817649-39814422 | 20130731
          Length = 455

 Score =  148 bits (374), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/199 (43%), Positives = 116/199 (58%), Gaps = 5/199 (2%)

Query: 156 KAQQQQSATELNSLGSRPPISVEEGEEVEQMARSPSIQSRSPVTAPLGISMNFGHGRKLL 215
           K Q+QQ  T+  S G R P+SVE G+EV++ +   +I  RSP+ APL +       ++L 
Sbjct: 262 KIQEQQRDTDPLSAGKRFPVSVEYGKEVDRDSERLAI-IRSPIRAPLALPTYGNRAQRLA 320

Query: 216 SNVLGSKCHPDTCQSSGDLPDTRSLRSRLEQKLEKEGLTVTVDCVNLLNNALDSYLKRLI 275
            N L S    +TC+S   LPDT SL  RLE  LE EG  ++ D  N+LN ALD YLKRLI
Sbjct: 321 HNGLPSGIVTNTCESISYLPDTHSLMKRLEHNLETEGCNISADAANVLNKALDVYLKRLI 380

Query: 276 ESSIGLAGSRSGSEYLRMRNRQSVTGSNVLLPARYMQTATQSAGVSVSDFRVAMELNPQV 335
           +  + LA S+  +++    +     G N L   R +Q    SA  S+SDFR AMELNP +
Sbjct: 381 KPCLDLAASKPVNKF----SGHIQPGMNYLPQNRSVQQLIGSASASISDFRAAMELNPAI 436

Query: 336 LGPDWPIQLEKICICASEE 354
           LG DW +  EK+C  ASEE
Sbjct: 437 LGEDWSLHFEKVCFRASEE 455



 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 115/233 (49%), Gaps = 41/233 (17%)

Query: 6   RSYIRVDTLKLKALIVRKVGQQRAGKYFGQLGRLLSSKISKSEFDRVCIRTIGRENIPLH 65
           R +  ++TL+ K  I R++G  R+ KYF  L   LS KI+K++FDR+CI TIGRENI LH
Sbjct: 5   RYFPPINTLEQKLQIQRRLGGVRSCKYFNLLSSFLSLKIAKTDFDRICIATIGRENITLH 64

Query: 66  NQFIKAILKNACSSKVPPPRGPARIGSALSGRDSNGLQQSSVQIPYGDAVPSLLRKDGSV 125
           N F+K+ILK A   K   PR  + + + L+ +  NG   +S+Q P    +P   RK  + 
Sbjct: 65  NHFLKSILKKASLPKTALPRQNS-VQAPLNVKTPNGC--NSLQ-PLCKNLPQSPRKCRTP 120

Query: 126 APREQKFKGR--------RNGFG-----------------RLGKPQSLTPEKL------- 153
             R+++F+GR         N  G                 ++ +PQ  +  K+       
Sbjct: 121 NLRDRRFRGRPPLAPLRKNNNIGFENSTPKTQEPQIKSTPKIQEPQINSTPKIQELQSNS 180

Query: 154 IHKAQQQQSATELNSLGSRPPISVEEGEEVEQ-----MARSPSIQSRSPVTAP 201
             K Q+Q   T+    G+    SVE G+EV +     + +SP IQ R   T P
Sbjct: 181 TPKIQEQPRVTDPQCAGNTLHASVECGKEVGRDSEMTIIKSPKIQERPRYTDP 233