Miyakogusa Predicted Gene
- Lj5g3v2099560.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2099560.1 Non Characterized Hit- tr|J3LQU5|J3LQU5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G3,47.9,7e-19,seg,NULL; FAMILY NOT NAMED,NULL,gene.g62969.t1.1
(269 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g106470.1 | transcription factor | HC | chr1:48147124-4814... 171 6e-43
Medtr5g005110.1 | transcription factor | HC | chr5:277903-279787... 151 5e-37
Medtr1g106460.1 | basic helix loop helix (BHLH) DNA-binding fami... 141 5e-34
Medtr1g106480.1 | helix loop helix DNA-binding domain protein | ... 111 7e-25
Medtr3g103030.1 | transcription factor | HC | chr3:47454820-4745... 110 1e-24
Medtr1g018090.1 | helix loop helix DNA-binding domain protein | ... 91 1e-18
Medtr1g106470.2 | transcription factor | HC | chr1:48147121-4814... 89 5e-18
Medtr5g005110.2 | transcription factor | HC | chr5:277931-279777... 70 2e-12
Medtr1g106460.2 | basic helix loop helix (BHLH) DNA-binding fami... 63 3e-10
Medtr5g079500.1 | BHLH transcription factor, putative | HC | chr... 54 1e-07
>Medtr1g106470.1 | transcription factor | HC |
chr1:48147124-48145297 | 20130731
Length = 287
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 124/187 (66%), Gaps = 36/187 (19%)
Query: 110 HEMMVSEPA-EEERSRNLENPTKRFRNSIEDFKNMRN------AMPISNNEEGRGACLQS 162
H+ EP+ EE+RS N+ENP KRFR+S+E +N RN + +SNNEEG +
Sbjct: 106 HKGSCLEPSSEEDRSTNMENPAKRFRSSLEVSENTRNVRKCPKSASMSNNEEGLMWNGTN 165
Query: 163 SCFSQVDSNASLELVSGGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIYAR------- 215
+ FS VDS + G +SS++PK+ EAPKL KSRA S PATDAQSIYAR
Sbjct: 166 NRFSHVDS------IGGIISSSLSPKEHEAPKLGRKSRAASSPATDAQSIYARKRRERIN 219
Query: 216 ---------------VDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAYNGMDIGLD 260
VDISTMLEEAVQYVKFLQLQIK+LSS+DMWMYAPIAYNGM+IGLD
Sbjct: 220 ERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSEDMWMYAPIAYNGMNIGLD 279
Query: 261 LS-SSPT 266
LS SSPT
Sbjct: 280 LSFSSPT 286
>Medtr5g005110.1 | transcription factor | HC | chr5:277903-279787 |
20130731
Length = 331
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 126/210 (60%), Gaps = 38/210 (18%)
Query: 92 ESGRQVLTENNLQAKREYHEMMVSEPAEEERSRNLENPTKRFRNSIEDFKNMRN------ 145
+S QVL NLQA++ E++VSEP EE+++ + EN KR R+S E KN RN
Sbjct: 109 QSDEQVLANKNLQARKTEREILVSEP-EEDKTTSTENSGKRSRSSNEVPKNKRNVKCRKM 167
Query: 146 --AMPISNNEE----GRGACLQSSCFSQVDSNASLELVSGGATSSMTPKDPEAPKLYGKS 199
IS E + L C S+ +SN+S E G +SS++ D A KL GKS
Sbjct: 168 IRCASISTEENTSTGSQDQTLSGYC-SEDESNSSHE-PRGRESSSLSLND-SAAKLSGKS 224
Query: 200 RATSGPATDAQSIYAR----------------------VDISTMLEEAVQYVKFLQLQIK 237
R++ GPATD QS+YAR VDISTMLEEAVQYVKFLQLQIK
Sbjct: 225 RSSRGPATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIK 284
Query: 238 VLSSDDMWMYAPIAYNGMDIGLDLSSSPTK 267
+LSSDD WMY+PIAYNGM+IGL+L +PTK
Sbjct: 285 LLSSDDTWMYSPIAYNGMNIGLELGITPTK 314
>Medtr1g106460.1 | basic helix loop helix (BHLH) DNA-binding family
protein | HC | chr1:48142311-48140254 | 20130731
Length = 330
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 118/328 (35%), Positives = 149/328 (45%), Gaps = 86/328 (26%)
Query: 1 MAQLLGGNYSVTDKHCGNPSFGMPMPSSTIWHGHEXXXXXXXXXXXXXYFPSNVTNTN-- 58
M QLL N+ V++ H GN F + +PS T W GHE +FP N N+N
Sbjct: 26 MGQLLN-NFQVSEHHYGN--FNLEIPS-TSWPGHESKIVSMNSSS---HFPQNADNSNTD 78
Query: 59 ---FLXXXXXXXXXXXXXXXX-----WNDKL-------------------TQQITQSINE 91
FL ND + +QQIT++ +E
Sbjct: 79 VFSFLQSSSISDTSNIFHNTNGGNICLNDHVANIGYMNANISTYSVQGNDSQQITENTSE 138
Query: 92 ESGRQVLTENNLQAKREYHEMMVSEPAEEERSRNLENPTKRFRNSIEDFKNMRNAMP--- 148
E G+ V SE A+E NLE KR R+S++ KN RN
Sbjct: 139 EFGQDV-----------------SESAKEAIKNNLEKSGKRSRSSMKVQKNKRNVKSRKK 181
Query: 149 -----ISNNEEGRGACLQSSCFSQVDS--NASLELVSGGATSSMTPKDPEAPKLYGKSRA 201
SN +E LQ S D NAS +L + G +S + D KL GKSR
Sbjct: 182 PKSAFKSNADEDESHDLQEQNLSSEDDDFNASQKL-NAGTSSILNQNDSPDLKLKGKSRC 240
Query: 202 TSGPATDAQSIYAR----------------------VDISTMLEEAVQYVKFLQLQIKVL 239
G A+D Q +YA+ VDISTMLEEAVQYVKFLQ+QIK+L
Sbjct: 241 NGGSASDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFLQVQIKLL 300
Query: 240 SSDDMWMYAPIAYNGMDIGLDLSSSPTK 267
SSDD WMYAPIAYNGM+IGL+L+ PT+
Sbjct: 301 SSDDHWMYAPIAYNGMNIGLNLNIIPTE 328
>Medtr1g106480.1 | helix loop helix DNA-binding domain protein | HC
| chr1:48151299-48150443 | 20130731
Length = 157
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 77/141 (54%), Gaps = 56/141 (39%)
Query: 179 GGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIY------------------------- 213
GG S ++PK+ EAPKL KS+A SGPATDAQSIY
Sbjct: 19 GGKPSILSPKEHEAPKLCRKSKAGSGPATDAQSIYLCKSKSPLKDISLVRIWIQVNYAES 78
Query: 214 ---------------------------ARVDISTMLEEAVQYVKFLQLQIKVLSSDDMWM 246
+VDISTMLEEAVQYVKFLQLQIK+LS MWM
Sbjct: 79 QYVIMILRRRERINERLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLS---MWM 135
Query: 247 YAPIAYNGMDIGLDLS-SSPT 266
YAPIAYNGM+IGLDLS SSPT
Sbjct: 136 YAPIAYNGMNIGLDLSFSSPT 156
>Medtr3g103030.1 | transcription factor | HC |
chr3:47454820-47457040 | 20130731
Length = 321
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 93/174 (53%), Gaps = 34/174 (19%)
Query: 120 EERSRNLENPTKRFRNSIEDFKNMRNAMPISNNEEGRGACLQSSCFSQVDSNAS------ 173
E+++ + NPTK+ R S + + + NA + + R + +D + S
Sbjct: 142 EDKTNSCGNPTKKHRASKDVQRYVNNAESKKSKKVNRNENKAEEANTSIDGHNSSGYTSE 201
Query: 174 ----LELVSGGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIYAR-------------- 215
E SGGA S K + GK RA+ G ATD QS+YAR
Sbjct: 202 EQNMCEENSGGA--SAASKSTVSLNSNGKKRASRGSATDPQSLYARKRREKINERLRTLQ 259
Query: 216 --------VDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAYNGMDIGLDL 261
VDISTMLE+A+QYVKFLQLQIK+LSSDD+WMYAPIAYNG+DIG +L
Sbjct: 260 NLVPNGTKVDISTMLEDAIQYVKFLQLQIKLLSSDDLWMYAPIAYNGLDIGFNL 313
>Medtr1g018090.1 | helix loop helix DNA-binding domain protein | LC
| chr1:5273706-5271864 | 20130731
Length = 366
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 61/106 (57%), Gaps = 33/106 (31%)
Query: 169 DSNASLELVSGGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIYAR------------- 215
D NAS E SGG T + GK+RA+ G ATD QS+YAR
Sbjct: 255 DDNASQE-NSGGTTLNSN----------GKTRASRGSATDPQSLYARKRRERINERLRVL 303
Query: 216 ---------VDISTMLEEAVQYVKFLQLQIKVLSSDDMWMYAPIAY 252
VDISTMLEEAV YVKFLQ QIK+LSSDDMWMYAP+AY
Sbjct: 304 QNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLLSSDDMWMYAPLAY 349
>Medtr1g106470.2 | transcription factor | HC |
chr1:48147121-48145297 | 20130731
Length = 240
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 73/113 (64%), Gaps = 13/113 (11%)
Query: 110 HEMMVSEPA-EEERSRNLENPTKRFRNSIEDFKNMRN------AMPISNNEEGRGACLQS 162
H+ EP+ EE+RS N+ENP KRFR+S+E +N RN + +SNNEEG +
Sbjct: 106 HKGSCLEPSSEEDRSTNMENPAKRFRSSLEVSENTRNVRKCPKSASMSNNEEGLMWNGTN 165
Query: 163 SCFSQVDSNASLELVSGGATSSMTPKDPEAPKLYGKSRATSGPATDAQSIYAR 215
+ FS VDS + G +SS++PK+ EAPKL KSRA S PATDAQSIYAR
Sbjct: 166 NRFSHVDS------IGGIISSSLSPKEHEAPKLGRKSRAASSPATDAQSIYAR 212
>Medtr5g005110.2 | transcription factor | HC | chr5:277931-279777 |
20130731
Length = 272
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 77/136 (56%), Gaps = 16/136 (11%)
Query: 92 ESGRQVLTENNLQAKREYHEMMVSEPAEEERSRNLENPTKRFRNSIEDFKNMRN------ 145
+S QVL NLQA++ E++VSEP EE+++ + EN KR R+S E KN RN
Sbjct: 109 QSDEQVLANKNLQARKTEREILVSEP-EEDKTTSTENSGKRSRSSNEVPKNKRNVKCRKM 167
Query: 146 --AMPISNNEE----GRGACLQSSCFSQVDSNASLELVSGGATSSMTPKDPEAPKLYGKS 199
IS E + L C S+ +SN+S E G +SS++ D A KL GKS
Sbjct: 168 IRCASISTEENTSTGSQDQTLSGYC-SEDESNSSHE-PRGRESSSLSLND-SAAKLSGKS 224
Query: 200 RATSGPATDAQSIYAR 215
R++ GPATD QS+YAR
Sbjct: 225 RSSRGPATDPQSLYAR 240
>Medtr1g106460.2 | basic helix loop helix (BHLH) DNA-binding family
protein | HC | chr1:48142311-48140254 | 20130731
Length = 279
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 100/254 (39%), Gaps = 64/254 (25%)
Query: 1 MAQLLGGNYSVTDKHCGNPSFGMPMPSSTIWHGHEXXXXXXXXXXXXXYFPSNVTNTN-- 58
M QLL N+ V++ H GN F + +PS T W GHE +FP N N+N
Sbjct: 26 MGQLLN-NFQVSEHHYGN--FNLEIPS-TSWPGHESKIVSMNSSS---HFPQNADNSNTD 78
Query: 59 ---FLXXXXXXXXXXXXXXXX-----WNDKL-------------------TQQITQSINE 91
FL ND + +QQIT++ +E
Sbjct: 79 VFSFLQSSSISDTSNIFHNTNGGNICLNDHVANIGYMNANISTYSVQGNDSQQITENTSE 138
Query: 92 ESGRQVLTENNLQAKREYHEMMVSEPAEEERSRNLENPTKRFRNSIEDFKNMRNAMP--- 148
E G+ V SE A+E NLE KR R+S++ KN RN
Sbjct: 139 EFGQDV-----------------SESAKEAIKNNLEKSGKRSRSSMKVQKNKRNVKSRKK 181
Query: 149 -----ISNNEEGRGACLQSSCFSQVDS--NASLELVSGGATSSMTPKDPEAPKLYGKSRA 201
SN +E LQ S D NAS +L + G +S + D KL GKSR
Sbjct: 182 PKSAFKSNADEDESHDLQEQNLSSEDDDFNASQKL-NAGTSSILNQNDSPDLKLKGKSRC 240
Query: 202 TSGPATDAQSIYAR 215
G A+D Q +YA+
Sbjct: 241 NGGSASDPQGVYAK 254
>Medtr5g079500.1 | BHLH transcription factor, putative | HC |
chr5:33988652-33990553 | 20130731
Length = 311
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 24/85 (28%)
Query: 185 MTPKDPEAPKLYG--KSRATSGPATDAQSIYAR----------------------VDIST 220
M P + + P K + S P+ D QS+ A+ VD+ T
Sbjct: 202 MQPTNAKKPCTAASKKEKHKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVT 261
Query: 221 MLEEAVQYVKFLQLQIKVLSSDDMW 245
MLE+A+ YVKFLQLQ+KVL++D+ W
Sbjct: 262 MLEKAISYVKFLQLQVKVLAADEFW 286