Miyakogusa Predicted Gene

Lj5g3v2099510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2099510.1 tr|G7IEV8|G7IEV8_MEDTR Endo-1 4-beta-xylanase
OS=Medicago truncatula GN=MTR_1g106800 PE=4
SV=1,42.95,5e-18,seg,NULL,CUFF.56639.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g106210.1 | cyclin-like protein, putative | HC | chr1:4811...    71   4e-13
Medtr1g106210.2 | cyclin-like protein, putative | HC | chr1:4811...    71   4e-13

>Medtr1g106210.1 | cyclin-like protein, putative | HC |
           chr1:48114624-48117933 | 20130731
          Length = 261

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 9/62 (14%)

Query: 95  SNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQ 154
           +N H EP KHS+QPPRSRSYYQ         VGRS G+REA  K +AQSKEN++R+ET Q
Sbjct: 36  TNGHSEPSKHSSQPPRSRSYYQ---------VGRSTGQREADEKVYAQSKENNQRLETGQ 86

Query: 155 SR 156
           SR
Sbjct: 87  SR 88


>Medtr1g106210.2 | cyclin-like protein, putative | HC |
           chr1:48114624-48117670 | 20130731
          Length = 261

 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 9/62 (14%)

Query: 95  SNDHQEPPKHSAQPPRSRSYYQHAERGNTEQVGRSAGRREAGGKAFAQSKENSERVETSQ 154
           +N H EP KHS+QPPRSRSYYQ         VGRS G+REA  K +AQSKEN++R+ET Q
Sbjct: 36  TNGHSEPSKHSSQPPRSRSYYQ---------VGRSTGQREADEKVYAQSKENNQRLETGQ 86

Query: 155 SR 156
           SR
Sbjct: 87  SR 88