Miyakogusa Predicted Gene

Lj5g3v2063170.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2063170.2 Non Characterized Hit- tr|C5Y4A5|C5Y4A5_SORBI
Putative uncharacterized protein Sb05g021410
OS=Sorghu,48.7,9e-18,seg,NULL,CUFF.56637.2
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g105970.1 | tubulin alpha-6 chain, putative | HC | chr1:47...   206   1e-53

>Medtr1g105970.1 | tubulin alpha-6 chain, putative | HC |
           chr1:47891638-47894761 | 20130731
          Length = 214

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 126/176 (71%), Gaps = 3/176 (1%)

Query: 1   MASLRPTLSQLSLSKSNFSRHPTRNISPPDCFLVRRIGKFQTFTASKFMVSCTXXX-XXX 59
           MA LRPTLSQLSLS+SNF R+ + N     CF  +RI KFQ   +S+  V C+       
Sbjct: 1   MAFLRPTLSQLSLSQSNFPRNSSLNHPTQQCFFHKRILKFQNSKSSR--VCCSSSQDAKN 58

Query: 60  XXXGDEAPESLFMKELKRRGMNPTSLLEDYKQSSNVLDEEVYVNEEDRGSPKRSAVSTNI 119
              G+E PESLF+KELKRRGM PTSLLEDYKQ++  +DEE +VNEEDRG   R  VSTNI
Sbjct: 59  QNNGEEPPESLFLKELKRRGMTPTSLLEDYKQTNYGVDEEAFVNEEDRGFLNRKTVSTNI 118

Query: 120 ERGLENQRERSMALNSEGLEGLVPRAKXXXXXXXXXXXAFGPLILVTVALFSALYF 175
           ERGLENQRERSMALNSEGLEGLVPRAK           AFGPLIL+TVA FSALYF
Sbjct: 119 ERGLENQRERSMALNSEGLEGLVPRAKLLLTLGGTFFLAFGPLILITVAFFSALYF 174