Miyakogusa Predicted Gene

Lj5g3v2057420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2057420.1 tr|B9HHH4|B9HHH4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_719300 PE=4
SV=1,31.51,0.0000004,seg,NULL,CUFF.56568.1
         (282 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g104840.1 | hypothetical protein | HC | chr1:47256903-4725...   270   1e-72

>Medtr1g104840.1 | hypothetical protein | HC |
           chr1:47256903-47257899 | 20130731
          Length = 247

 Score =  270 bits (691), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/245 (62%), Positives = 175/245 (71%), Gaps = 25/245 (10%)

Query: 36  MVSLEP--VQGNP-RSIDAPSSPRISFSAEFLDDENFISISPNPVY------ERDHQEKE 86
           MVSLEP  VQGN  RS DAP+SPRISFSAEFLD+ NFISISPNP+Y      E++  EK 
Sbjct: 1   MVSLEPEPVQGNNLRSSDAPTSPRISFSAEFLDENNFISISPNPLYRTERDQEKEQHEKT 60

Query: 87  QRNPEFEFLSSKG-SNNNTVVTADELFFEGKLLPFWQMQHLEKLNKISLKPKDERXXXXX 145
           +   +FEFLS+   S+ NTV++ADELFFEGK+LPFWQMQHLEKLNKI+LK          
Sbjct: 61  KNTDQFEFLSNINISDKNTVLSADELFFEGKILPFWQMQHLEKLNKINLK---------E 111

Query: 146 XXXXXXXXXSNSNKEDS--SRVNNWFVDDDPSPRPPKCTVLWKELLRLKKQRXXXXXXXX 203
                       NKED+  SRVN WFVDDDPSPRPPKCTVLWKELLRLKKQR        
Sbjct: 112 EEEEEVIEVVVDNKEDNNNSRVN-WFVDDDPSPRPPKCTVLWKELLRLKKQRASSLSPSS 170

Query: 204 XXXXXXXXXXXLGDVAAKEGKDGTRSKDQQHVKRLKKGLERTRSATIRIRPMINVPICTQ 263
                      LGDVAAKEG   +++K+ QHVKR+KKGLERTRSATIRIRPMINVPICTQ
Sbjct: 171 SSSSSSSNGSSLGDVAAKEG---SKNKENQHVKRIKKGLERTRSATIRIRPMINVPICTQ 227

Query: 264 VKSSA 268
           +K+SA
Sbjct: 228 MKNSA 232