Miyakogusa Predicted Gene

Lj5g3v2056280.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2056280.3 Non Characterized Hit- tr|Q9M1X1|Q9M1X1_ARATH
Putative uncharacterized protein F16M2_30
OS=Arabidops,33.98,4e-17,seg,NULL,CUFF.56598.3
         (534 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g104710.1 | TIME FOR coffee-like protein, putative | HC | ...   446   e-125
Medtr8g031380.1 | transmembrane protein, putative | LC | chr8:11...    53   6e-07

>Medtr1g104710.1 | TIME FOR coffee-like protein, putative | HC |
           chr1:47174909-47167865 | 20130731
          Length = 1554

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 288/506 (56%), Positives = 311/506 (61%), Gaps = 34/506 (6%)

Query: 1   MDRIREARRTSMAANGLTRRRHRTNSLRDSPEEDGGMELQEPTXXX---XXXXXXXXXXX 57
           MDRIREARR++MAANGLTRRRHRTNSLRDSP++DGGME+QEPT                 
Sbjct: 1   MDRIREARRSTMAANGLTRRRHRTNSLRDSPDDDGGMEMQEPTRLRDRGSGKKERDRERE 60

Query: 58  XXXXXXXXXXXXXXXXXXXMHSSREDGGEDTSDESINXXXXXXXXXXXXXXXXXXXXXXS 117
                              MH  REDGGEDTS+ESIN                      S
Sbjct: 61  RERERDRLGRNKRRRNDRLMHGVREDGGEDTSEESINDEEDDDDEDGGGGGGGG-----S 115

Query: 118 VRMXXXXXXXXXXXXXXXXXXXXXRKSFPPAKVFRPAPPTTWKAADEMIGVSVPRKARSA 177
           VRM                     RKSFPPAKVFRP PPTTWKAADEMIGVSVPRKARSA
Sbjct: 116 VRMLPLNPSTLSSSSSLTNHHH--RKSFPPAKVFRPTPPTTWKAADEMIGVSVPRKARSA 173

Query: 178 STKRSHECWASSGGGIVAEQNH-RQXXXXXXXXXXXXXXXXXXXXXGRKKIKQNGGG--- 233
           STKRSHECWASSGGGIV EQNH RQ                      RKKIK NGGG   
Sbjct: 174 STKRSHECWASSGGGIVPEQNHHRQPSSSPVRASAAPPSPSSSNASIRKKIKANGGGGGG 233

Query: 234 -PKFRPPKSS---PKAS---QDEIEIEIAEVLYGMMRQPQGQ-GPSKQEIIANNHESSSG 285
            PKFRPPKSS    KAS   QDEIEIEIAEVLYGMMRQPQ Q  PSKQE+      + S 
Sbjct: 234 GPKFRPPKSSSVTTKASSSVQDEIEIEIAEVLYGMMRQPQSQVAPSKQEM------NDSI 287

Query: 286 KFDSREQTNNKSSSDGKXXXXXXXXXXXXXAATPMSAV-APKRKRPRPVKNEEENXXXXX 344
           K DSRE  NNKSS+                +ATP+SAV APKRKRPRPVK+E+EN     
Sbjct: 288 KMDSREINNNKSSASDSKSRISSPPQNSSSSATPVSAVVAPKRKRPRPVKHEDENPAIFG 347

Query: 345 XXXXXXXXTTKVESDQPSKMETSSSNSAKNNPGSAAENLTNSLPVQAS-PEPVKPERNNA 403
                    +K ESD PSKME  SSNS KNN GS  E   N  PVQ S PEPVKPE +N 
Sbjct: 348 VRSSPVSSISKAESDHPSKMEACSSNSDKNNQGSVPEIPANLAPVQPSPPEPVKPE-SNT 406

Query: 404 SSDSKALTEESEKQKDAGLNKEVAPPQSPKKESSSTVLQQVDDTSESAVKATKSNQTMNE 463
           SSD+K LTEESEKQKD GL+KEV PP SPKKESS  VLQ VDD  E  VKATK+N T++E
Sbjct: 407 SSDAKVLTEESEKQKDVGLSKEVVPPVSPKKESS--VLQAVDDVRED-VKATKANLTISE 463

Query: 464 SVNQREEKFQIDLMAPPPTGKSSPER 489
           S NQ +EKFQIDLMAPPP+ +SSPER
Sbjct: 464 SENQLKEKFQIDLMAPPPSLRSSPER 489


>Medtr8g031380.1 | transmembrane protein, putative | LC |
           chr8:11762096-11763133 | 20130731
          Length = 213

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/25 (88%), Positives = 23/25 (92%)

Query: 177 ASTKRSHECWASSGGGIVAEQNHRQ 201
           ASTKRSHECWASSGGGIV EQNH +
Sbjct: 78  ASTKRSHECWASSGGGIVLEQNHHR 102