Miyakogusa Predicted Gene

Lj5g3v2056280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2056280.1 tr|B9MWL4|B9MWL4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_592674 PE=4
SV=1,39.47,2e-16,seg,NULL; coiled-coil,NULL,CUFF.56598.1
         (831 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g104710.1 | TIME FOR coffee-like protein, putative | HC | ...   766   0.0  
Medtr1g072160.1 | TIME FOR coffee-like protein, putative | HC | ...   116   7e-26

>Medtr1g104710.1 | TIME FOR coffee-like protein, putative | HC |
            chr1:47174909-47167865 | 20130731
          Length = 1554

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/758 (61%), Positives = 517/758 (68%), Gaps = 44/758 (5%)

Query: 1    MNESVNQREEKFQIDLMAPPPTGKSSPERDVVENNLXXXXXXXXX-XXXXXSLRMNXXXX 59
            ++ES NQ +EKFQIDLMAPPP+ +SSPER V  N++               S +M+    
Sbjct: 461  ISESENQLKEKFQIDLMAPPPSLRSSPERVVENNSVVEVEKVKHVMKEDQKSHKMDEVMV 520

Query: 60   XXXXXXXXXXXXXXSESQKLAIVQKERGIDLQLDLEKADRMDTSGNGSSVSKKX--XXXX 117
                          +E Q+  IVQKERGIDLQL+LEK DR+D++GNG+ ++KK       
Sbjct: 521  VEIEKVKAKAEE--NEFQRAPIVQKERGIDLQLELEKTDRVDSNGNGNHLNKKQHQNVQR 578

Query: 118  XXXXXXXXTNSEKNVQTNSLPLPMSVPPNWPGGLPSMGYMTPLQGVVSMDGTTVTPAAIP 177
                    TN EKNVQ+NSLP+PM+VP +WPGGLPSMGYMTPLQGVVSMDGTT+  AAIP
Sbjct: 579  HHHQLQQQTNLEKNVQSNSLPIPMNVP-SWPGGLPSMGYMTPLQGVVSMDGTTMPSAAIP 637

Query: 178  PPHLLFNQPRPKRCATHCYIARNILYHQQIARMNPFWPAAAGSAPMYGAKAG-NLNVVPS 236
            PPHLLFNQPRPKRCATHC+IA+ ILY+QQIARMNPFWPAAAGSA +YGAK G NL+VVP 
Sbjct: 638  PPHLLFNQPRPKRCATHCHIAQKILYNQQIARMNPFWPAAAGSASLYGAKPGSNLSVVPV 697

Query: 237  P--EL-LGNVPARAVNPTQDKVQSLTMFPSHIGKDKVPQPANVDNSSRKQILLQQGLPPG 293
            P  EL  GN+  RA N TQDK  SL MFP HIGKDK  QP+NVDNSSRK ILLQQ LP G
Sbjct: 698  PSTELHSGNIHGRATNSTQDKGPSLAMFPGHIGKDKSSQPSNVDNSSRKPILLQQTLPSG 757

Query: 294  AAPSNILHGPAFIFPLN---QQQAAAAASVRPGSMKSLPVTSNG-XXXXXXXXXXXXXXX 349
            AAPSNILHGP FIFPLN      AAAAASVRPGS+KSLPVTSNG                
Sbjct: 758  AAPSNILHGPTFIFPLNQQQAAAAAAAASVRPGSVKSLPVTSNGPPSSTTNSAPPNTSGA 817

Query: 350  XXXXXXTPAMSFSYPSMPGNETQYLAILQNNAYPFPIPAHVGGPPAYRGTHGQPPFPFFN 409
                   P MSF+YP+M GNETQY+AILQNNAYPFPIPAHVGGPP YRG   Q  FPFFN
Sbjct: 818  GAAAPAPPTMSFTYPNMSGNETQYMAILQNNAYPFPIPAHVGGPPGYRGNPAQ-AFPFFN 876

Query: 410  GSFYXXXXXXXXXXXXXXXXXXXXXXXXXXXN-TSISTGSSSQKHAQNQQQK-PNHASSS 467
            GSFY                           N T  +  SSSQKHAQNQQQK  N + S+
Sbjct: 877  GSFYPSQMIHPSQIQSQQPPAQSQQSQQGHPNTTISTGSSSSQKHAQNQQQKANNASGSN 936

Query: 468  NGVGGSLQGFPVTKNPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNHHTSH 527
             G  GSLQGFPVTKNP                                     +NHHTS+
Sbjct: 937  GGGSGSLQGFPVTKNP---------------------QSQILQLQQQQHRQQLHNHHTSN 975

Query: 528  PARQVENEMGGEDSPSTADSRFTRAAMNIYGQNFAMPMQAPNFALMTPAISGAGSNGSHG 587
             ARQVE+EMG EDSPSTADSR  RA MNIYGQNFAMPMQ PNFALMT A+SGAGSNG+H 
Sbjct: 976  AARQVESEMGCEDSPSTADSRHNRATMNIYGQNFAMPMQTPNFALMTTAMSGAGSNGNHS 1035

Query: 588  EKKQPQQQHPGSKAGGETSPAFAMSFASINGAAAATGLDLSSFAHNHSIMQSNHNYQIMA 647
            EKKQ QQQHPGSKAGGETSPAFAM F SI G   AT LDLSS A NHSIMQS+HN+Q+MA
Sbjct: 1036 EKKQ-QQQHPGSKAGGETSPAFAMPFPSITG---ATALDLSSIAQNHSIMQSSHNFQLMA 1091

Query: 648  GAQAASAQLKKNYHAVEEGKNVANSSNLEEDRKSMSGKNPTTMGQSIAFARPDMSDPS-- 705
             AQAASAQLKK+YHA EEGK+V NSSNLEEDRK++SGK PTT GQ+IAFAR D++DPS  
Sbjct: 1092 TAQAASAQLKKSYHAAEEGKHVVNSSNLEEDRKAISGKIPTTGGQNIAFARSDVADPSMT 1151

Query: 706  SLAANNVIDSSGRSLHLGXXXXXXXXXXXXXXINSNAA 743
            S+A NNVIDSSGRSL+LG              INSNAA
Sbjct: 1152 SIACNNVIDSSGRSLNLGSASSRASASGMPSAINSNAA 1189


>Medtr1g072160.1 | TIME FOR coffee-like protein, putative | HC |
           chr1:32016258-32010788 | 20130731
          Length = 1199

 Score =  116 bits (291), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 140/303 (46%), Gaps = 23/303 (7%)

Query: 129 EKNVQTNSLPLPMSVPPNWPGGLPSMGYMT-------PLQGVVSMDGTTVTPAAIPPPHL 181
           EK   ++S+PLP +V    P  L  +G +T       PLQ VV M+ TT +  +    + 
Sbjct: 432 EKTACSSSVPLPAAVS-GLPSSLSPIGSITMTGGCTPPLQTVVKMNTTTGSSTSAQRVNF 490

Query: 182 LFNQPRPKRCATHCYIARNILYHQQIARMNPFWPAAAGSAPMYGAKAGNLNVVPSPELL- 240
             ++P+PKRCATH  IAR IL  +Q  +MNP   AA GS  +   K  N+N + S E + 
Sbjct: 491 ALSEPQPKRCATHYQIARKILL-KQFTKMNPLLSAAIGSGSLCAPKTNNVNCLLSAESMI 549

Query: 241 ------GNVPARAVNPTQDKVQSLTMFPSH-IGKDKVPQPANVDNSSRKQILLQQGLPPG 293
                  ++P+   N TQ+K   LT+   H +   K     N  +S  +  LLQQG P  
Sbjct: 550 INKQSQKHLPSLDQNGTQEK--RLTVIGDHNLTATKNSNNPNPVDSIHQMHLLQQG-PFA 606

Query: 294 AAPSNILHGPAFIF-PLNQQQAAAAASVRPGSMKSLPVTSN-GXXXXXXXXXXXXXXXXX 351
            +  N++HGPAF+F P + Q + AAA+ + G + S   TS+                   
Sbjct: 607 GSTGNLVHGPAFVFSPAHYQASVAAATNQAGGVSSPNNTSSYNRSQSSVAGSPCTTSTLP 666

Query: 352 XXXXTPAMSFSYPSMPGNETQYLAILQNNAYPFPI-PAHVGGPPAYRGTHGQPPFPFFNG 410
                 AMSFSYP    N + Y  ++ NN Y FP+  + +G   A R            G
Sbjct: 667 ATAIANAMSFSYPHFSANNSPYATLVHNNGYSFPVSSSSLGATAAIRNASSAQTTHILGG 726

Query: 411 SFY 413
             Y
Sbjct: 727 PLY 729



 Score = 66.6 bits (161), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 95/177 (53%), Gaps = 22/177 (12%)

Query: 526 SHPARQVENEMGGEDSPSTADSRFTRAAM-NIYGQNFAMPMQAPNFALMTPAISGA--GS 582
           SHP +Q E E+ G++ PS A+   T   + N+ GQNF +P+Q  NF+    A S +  G+
Sbjct: 797 SHPHKQ-ETEVNGKNVPSVAN--LTSCPLKNLQGQNFTIPVQPVNFSFKPCATSDSVGGN 853

Query: 583 NGSHGEKKQPQQQHPGSKAGGETSPA--FAMSFASINGAAAATGLDLSSFAHNHSIMQSN 640
           +G+ G+K+Q        K G E  P+  FA+SF S NG    + L+ SS   N  ++QS 
Sbjct: 854 SGNFGDKQQQ-----ALKGGVEVIPSQPFAVSFGSFNGTNLPSNLNFSSMKQNPLVIQSL 908

Query: 641 HNYQIMAGAQAASAQ---LKKNYHAVEEGKNVANSSNLEEDRKSMSGKN----PTTM 690
            +     G QAAS      +KNY    E K   NSS+ ++++K+  GK+    PTT+
Sbjct: 909 PDV-ARQGYQAASTSHIVQQKNYSTTIE-KRGGNSSHKDDEKKTTHGKSSANGPTTL 963