Miyakogusa Predicted Gene
- Lj5g3v2046030.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2046030.1 tr|B9HVZ8|B9HVZ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_660193 PE=4
SV=1,40.8,3e-18,RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED,NULL; XS,XS
domain; seg,NULL,CUFF.56539.1
(476 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g103740.1 | XS domain protein | HC | chr1:46959070-4695427... 387 e-107
Medtr1g103730.1 | XS domain protein | HC | chr1:46951499-4695113... 202 5e-52
Medtr1g492940.1 | XS domain protein | HC | chr1:41678093-4168380... 159 4e-39
Medtr1g492940.3 | XS domain protein | HC | chr1:41678407-4168380... 112 9e-25
Medtr1g492940.5 | XS domain protein | HC | chr1:41678093-4168383... 112 1e-24
Medtr2g007690.2 | XS domain protein/XS zinc finger protein | HC ... 64 5e-10
Medtr2g007690.1 | XS domain protein/XS zinc finger protein | HC ... 64 5e-10
Medtr3g098240.1 | suppressor OF protein silencing protein | HC |... 59 7e-09
Medtr3g098260.1 | suppressor OF protein silencing protein | HC |... 58 2e-08
Medtr3g067815.1 | XH/XS domain protein | HC | chr3:30442774-3045... 56 6e-08
Medtr3g067815.2 | XH/XS domain protein | HC | chr3:30442712-3045... 56 6e-08
Medtr5g079940.2 | XH/XS domain protein | HC | chr5:34197983-3420... 53 5e-07
Medtr5g079940.1 | XH/XS domain protein | HC | chr5:34197952-3420... 53 5e-07
>Medtr1g103740.1 | XS domain protein | HC | chr1:46959070-46954272 |
20130731
Length = 418
Score = 387 bits (993), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/284 (67%), Positives = 226/284 (79%), Gaps = 8/284 (2%)
Query: 81 AYGFHMLERRTIVLADGSVRSYFALPPDYQDFAPPPRHLDRFDMRFPPRPGFRNPMEPP- 139
AYGFHMLERRTI+LADGSVRSYFALPPDYQDFAPPPR +DRF +PPRP ++NPME
Sbjct: 82 AYGFHMLERRTIILADGSVRSYFALPPDYQDFAPPPRPIDRF--AYPPRPDYQNPMEAAS 139
Query: 140 AKRKYGDEDGGDEFAKQREQLLRNANNGFASGGSLKRDLGGDAAESRPSKQXXXXXXXXX 199
AKRKYG ED DEFA+QREQLLRNAN GFA+ + + ++ RPSKQ
Sbjct: 140 AKRKYG-EDCRDEFARQREQLLRNAN-GFANRVPVGGEFPAGPSDLRPSKQLRVDGVGSG 197
Query: 200 XXXXXXXXLQVDQDALKKAFFNFVKLINENTTLKKSYLEDGKQGRLQCVACGSANGRSAK 259
+QVDQD+LKK F +FV+LIN+N LKKS LEDGKQGR+QC+ACGS + R+AK
Sbjct: 198 NNARH---VQVDQDSLKKKFLHFVRLINDNPLLKKSLLEDGKQGRVQCIACGSGSNRAAK 254
Query: 260 EFPDMHALVMHSYNSDNADLHVDHLGLHKALCVLMGWNYSKPPDNSKTYQFLSADEAAAN 319
+F D+HAL+MH++NSDNADL DHLGLHKALCVLMGWN+SKPPDNSK Y++LSADEA AN
Sbjct: 255 DFSDIHALIMHTFNSDNADLRADHLGLHKALCVLMGWNHSKPPDNSKAYRYLSADEAEAN 314
Query: 320 QDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRELGFT 363
QDDLIMWPPLVIIHNT+TGK RDGRMEG+G K MD K+R G++
Sbjct: 315 QDDLIMWPPLVIIHNTHTGKGRDGRMEGLGNKWMDNKLRGFGYS 358
>Medtr1g103730.1 | XS domain protein | HC | chr1:46951499-46951131 |
20130731
Length = 122
Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 109/118 (92%)
Query: 359 ELGFTGGKSKSLYGREGHLGITLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWARVQPQI 418
ELGF GGKSK+LYG+EGHLG+ L+KFAGD+SGL+EA+RL EHF+KENHGRKDW RVQ Q
Sbjct: 5 ELGFGGGKSKALYGKEGHLGMILIKFAGDKSGLEEAMRLGEHFKKENHGRKDWVRVQAQT 64
Query: 419 LGKDDENNPNLVKVDEKKGDKRRILYGYLGTAFDLDKVDFDTRKKLVIESWREYKPSM 476
LGKD+ENNPNLVK DE+ G+KRR+LYGY+GTAFDLDK+DFDTRKK+VIES REYKPSM
Sbjct: 65 LGKDNENNPNLVKFDERNGEKRRVLYGYVGTAFDLDKLDFDTRKKVVIESRREYKPSM 122
>Medtr1g492940.1 | XS domain protein | HC | chr1:41678093-41683800 |
20130731
Length = 1078
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 142/256 (55%), Gaps = 12/256 (4%)
Query: 215 LKKAFFNFVKLINENTTLKKSYLEDGKQGRLQCVACGSANGRSAKEFPDMHALVMHSYNS 274
+ + F + K +N N +++ Y + GK G L C+ CG + S+KEF D +LV H++ S
Sbjct: 815 VHENFLTYSKNLNLNLPVQRRYQKQGKAGCLFCIVCGRS---SSKEFMDTRSLVTHAFMS 871
Query: 275 DNADLHVDHLGLHKALCVLMGWNYSKPPDN-SKTYQFLSADEAAANQDDLIMWPPLVIIH 333
A + HLGLHKA+CV+MGW+ P D + Q L EA A ++DLI+WPP+VIIH
Sbjct: 872 HKAGMRAKHLGLHKAICVMMGWDTDIPQDTVTWVPQVLPHAEALAQKEDLILWPPVVIIH 931
Query: 334 NTNTGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREGHLGITLVKFAGDQSGLKE 393
N + + + ++ ++A IR GF G+ K G+ LVKF G GL +
Sbjct: 932 NISMSDDNPQNWKVISMETIEAFIRGKGFVRGRIKLCLGKPADQSTFLVKFLGTFVGLGD 991
Query: 394 AIRLAEHFEKENHGRKDWARVQPQILGKDDENNPNLVKVDEKKGDK-RRILYGYLGTAFD 452
A R+ ++ N GR D+ RV+ + + N+ + D+ GDK LYGY+ A D
Sbjct: 992 AERIHKYLSDSNRGRADYERVKSGGV-----TSCNIEETDQ--GDKVESFLYGYVAIAED 1044
Query: 453 LDKVDFDTRKKLVIES 468
L+K+DF+++ ++S
Sbjct: 1045 LEKLDFNSKNWSTVKS 1060
>Medtr1g492940.3 | XS domain protein | HC | chr1:41678407-41683800 |
20130731
Length = 963
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Query: 215 LKKAFFNFVKLINENTTLKKSYLEDGKQGRLQCVACGSANGRSAKEFPDMHALVMHSYNS 274
+ + F + K +N N +++ Y + GK G L C+ CG + S+KEF D +LV H++ S
Sbjct: 815 VHENFLTYSKNLNLNLPVQRRYQKQGKAGCLFCIVCGRS---SSKEFMDTRSLVTHAFMS 871
Query: 275 DNADLHVDHLGLHKALCVLMGWNYSKPPDN-SKTYQFLSADEAAANQDDLIMWPPLVIIH 333
A + HLGLHKA+CV+MGW+ P D + Q L EA A ++DLI+WPP+VIIH
Sbjct: 872 HKAGMRAKHLGLHKAICVMMGWDTDIPQDTVTWVPQVLPHAEALAQKEDLILWPPVVIIH 931
Query: 334 NTNTGKSRDGRMEGMGIKAMDAKIR 358
N + + + ++ ++A IR
Sbjct: 932 NISMSDDNPQNWKVISMETIEAFIR 956
>Medtr1g492940.5 | XS domain protein | HC | chr1:41678093-41683839 |
20130731
Length = 934
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Query: 215 LKKAFFNFVKLINENTTLKKSYLEDGKQGRLQCVACGSANGRSAKEFPDMHALVMHSYNS 274
+ + F + K +N N +++ Y + GK G L C+ CG + S+KEF D +LV H++ S
Sbjct: 786 VHENFLTYSKNLNLNLPVQRRYQKQGKAGCLFCIVCGRS---SSKEFMDTRSLVTHAFMS 842
Query: 275 DNADLHVDHLGLHKALCVLMGWNYSKPPDN-SKTYQFLSADEAAANQDDLIMWPPLVIIH 333
A + HLGLHKA+CV+MGW+ P D + Q L EA A ++DLI+WPP+VIIH
Sbjct: 843 HKAGMRAKHLGLHKAICVMMGWDTDIPQDTVTWVPQVLPHAEALAQKEDLILWPPVVIIH 902
Query: 334 NTNTGKSRDGRMEGMGIKAMDAKIR 358
N + + + ++ ++A IR
Sbjct: 903 NISMSDDNPQNWKVISMETIEAFIR 927
>Medtr2g007690.2 | XS domain protein/XS zinc finger protein | HC |
chr2:1079146-1083122 | 20130731
Length = 629
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 22/155 (14%)
Query: 320 QDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREGHLGI 379
+D I+WPP+V+I NT + + + GMG + + + G K++ YG GH G+
Sbjct: 327 KDREIVWPPMVVIMNTKYEQDENNKWTGMGNQELLDCFSDYGAL--KARHSYGPHGHRGM 384
Query: 380 TLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWARVQPQILGKDDENNPNLVKVDEKKGDK 439
+++ F +G E+++L +HF+++ R+ W R + NP + G K
Sbjct: 385 SVLIFEPSVAGYLESVQLYKHFKEQGRDREAWDRCK----------NPFV------PGGK 428
Query: 440 RRILYGYLGTAFDLD---KVDFDTRKKLVIESWRE 471
R+ LYGY+ + DLD K ++ K I S++E
Sbjct: 429 RQ-LYGYMASREDLDVFNKHSGKSKLKFEIRSYQE 462
>Medtr2g007690.1 | XS domain protein/XS zinc finger protein | HC |
chr2:1079146-1083118 | 20130731
Length = 629
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 22/155 (14%)
Query: 320 QDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREGHLGI 379
+D I+WPP+V+I NT + + + GMG + + + G K++ YG GH G+
Sbjct: 327 KDREIVWPPMVVIMNTKYEQDENNKWTGMGNQELLDCFSDYGAL--KARHSYGPHGHRGM 384
Query: 380 TLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWARVQPQILGKDDENNPNLVKVDEKKGDK 439
+++ F +G E+++L +HF+++ R+ W R + NP + G K
Sbjct: 385 SVLIFEPSVAGYLESVQLYKHFKEQGRDREAWDRCK----------NPFV------PGGK 428
Query: 440 RRILYGYLGTAFDLD---KVDFDTRKKLVIESWRE 471
R+ LYGY+ + DLD K ++ K I S++E
Sbjct: 429 RQ-LYGYMASREDLDVFNKHSGKSKLKFEIRSYQE 462
>Medtr3g098240.1 | suppressor OF protein silencing protein | HC |
chr3:44840494-44835486 | 20130731
Length = 759
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 247 CVACGSANGRSAKEFPDMHALVMHSYNSDNADLHVDHLGLHKALCVLM-------GWNYS 299
C AC S G S + + L+ H+ + + V H+ L VL+ G
Sbjct: 243 CPACQSGPG-SIDWYSGLLPLMNHAKTKGSKRVKV-----HRELAVLLDEELRRRGGTVV 296
Query: 300 KPPDNSKTYQFLSADEAAANQDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRE 359
++ ++ L +E +D I+WPP+VII NT + + + GMG + +
Sbjct: 297 PAGESFGKWKGLKEEE----KDHEIVWPPMVIIQNTKLEEDENNKWTGMGNQELLDYFS- 351
Query: 360 LGFTGGKSKSLYGREGHLGITLVKFAGDQSGLKEAIRLAEHFEKENHGRKDW 411
+ +++ YG GH G++++ F SG EA RL +HF + R+ W
Sbjct: 352 -SYAAVRARHSYGPNGHRGMSVLMFEASASGYLEAERLHKHFTDQGTNRETW 402
>Medtr3g098260.1 | suppressor OF protein silencing protein | HC |
chr3:44852260-44848884 | 20130731
Length = 644
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 20/156 (12%)
Query: 320 QDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREGHLGI 379
+D I+WPP+V+I NT + + + GMG + + + +++ YG +GH G+
Sbjct: 316 KDHEIVWPPMVMIQNTQLEQDENDKWTGMGNQELLDYFS--SYAAVRARHSYGPQGHRGM 373
Query: 380 TLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWARVQPQILGKDDENNPNLVKVDEKKGDK 439
+++ F SG EA RL +HF ++ R+ W +N + G+
Sbjct: 374 SVLMFEASASGFLEAERLDKHFAEQGTNREAWF------------SNRRRYNLFLPGGN- 420
Query: 440 RRILYGYLGTAFDLDKVDF----DTRKKLVIESWRE 471
R L+GY+ T DL+ + TR K + S++E
Sbjct: 421 -RQLFGYMATKEDLEAFNRHCQGKTRLKYELRSYQE 455
>Medtr3g067815.1 | XH/XS domain protein | HC |
chr3:30442774-30450725 | 20130731
Length = 640
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 283 HLGLHKALCV-LMGWNY-SKPPDNSKTYQFLSAD----EAAANQDDLIMWPPLVIIHNTN 336
HL L K L LM + SKP +N AD + + + D+ +WP + II N
Sbjct: 82 HLALVKYLEKDLMNIDTPSKPTENC-------ADNGDTDTSIDSDEQFVWPWIGIIVNIP 134
Query: 337 TGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREGHLGITLVKFAGDQSGLKEAIR 396
T +++DGR G + + R GF + L+ GH G LV+F + GL A+
Sbjct: 135 TSRAQDGRAVGASGSKLRDEYRRRGFNPYRVNPLWNFRGHSGTALVEFYKNWPGLDNALA 194
Query: 397 LAEHFEKENHGRKDW 411
+ + ++HG+KDW
Sbjct: 195 FEKAYASDHHGKKDW 209
>Medtr3g067815.2 | XH/XS domain protein | HC |
chr3:30442712-30450961 | 20130731
Length = 640
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 283 HLGLHKALCV-LMGWNY-SKPPDNSKTYQFLSAD----EAAANQDDLIMWPPLVIIHNTN 336
HL L K L LM + SKP +N AD + + + D+ +WP + II N
Sbjct: 82 HLALVKYLEKDLMNIDTPSKPTENC-------ADNGDTDTSIDSDEQFVWPWIGIIVNIP 134
Query: 337 TGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREGHLGITLVKFAGDQSGLKEAIR 396
T +++DGR G + + R GF + L+ GH G LV+F + GL A+
Sbjct: 135 TSRAQDGRAVGASGSKLRDEYRRRGFNPYRVNPLWNFRGHSGTALVEFYKNWPGLDNALA 194
Query: 397 LAEHFEKENHGRKDW 411
+ + ++HG+KDW
Sbjct: 195 FEKAYASDHHGKKDW 209
>Medtr5g079940.2 | XH/XS domain protein | HC |
chr5:34197983-34205199 | 20130731
Length = 1122
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%)
Query: 318 ANQDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREGHL 377
N + +WP I+ N T ++ DGR G + + R GF + ++L+ GH
Sbjct: 597 VNSERQFVWPWTGIVVNIPTSQTEDGRCIGESGSKLRDEYRIRGFNPRRVRTLWNSWGHT 656
Query: 378 GITLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWARVQPQILG 420
G +V+F GL A+ +E + HG+KDW Q G
Sbjct: 657 GAAVVEFNKSWLGLYNALAFERAYELDCHGKKDWLSYTEQKSG 699
>Medtr5g079940.1 | XH/XS domain protein | HC |
chr5:34197952-34206055 | 20130731
Length = 1122
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%)
Query: 318 ANQDDLIMWPPLVIIHNTNTGKSRDGRMEGMGIKAMDAKIRELGFTGGKSKSLYGREGHL 377
N + +WP I+ N T ++ DGR G + + R GF + ++L+ GH
Sbjct: 597 VNSERQFVWPWTGIVVNIPTSQTEDGRCIGESGSKLRDEYRIRGFNPRRVRTLWNSWGHT 656
Query: 378 GITLVKFAGDQSGLKEAIRLAEHFEKENHGRKDWARVQPQILG 420
G +V+F GL A+ +E + HG+KDW Q G
Sbjct: 657 GAAVVEFNKSWLGLYNALAFERAYELDCHGKKDWLSYTEQKSG 699