Miyakogusa Predicted Gene

Lj5g3v2045470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2045470.1 CUFF.56528.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g102900.3 | divergent CCT motif protein | HC | chr1:465138...   123   3e-29
Medtr1g102900.4 | divergent CCT motif protein | HC | chr1:465138...   123   4e-29
Medtr1g102900.5 | divergent CCT motif protein | HC | chr1:465138...   123   4e-29
Medtr1g102900.1 | divergent CCT motif protein | HC | chr1:465138...   120   2e-28
Medtr1g102900.2 | divergent CCT motif protein | HC | chr1:465138...   120   2e-28

>Medtr1g102900.3 | divergent CCT motif protein | HC |
          chr1:46513826-46507169 | 20130731
          Length = 330

 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 5/74 (6%)

Query: 1  MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
          MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1  MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61 VISLKALLEPTDED 74
          VISLKALLEPTD+D
Sbjct: 56 VISLKALLEPTDDD 69


>Medtr1g102900.4 | divergent CCT motif protein | HC |
          chr1:46513826-46507169 | 20130731
          Length = 238

 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 5/74 (6%)

Query: 1  MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
          MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1  MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61 VISLKALLEPTDED 74
          VISLKALLEPTD+D
Sbjct: 56 VISLKALLEPTDDD 69


>Medtr1g102900.5 | divergent CCT motif protein | HC |
          chr1:46513826-46508734 | 20130731
          Length = 260

 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 5/74 (6%)

Query: 1  MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
          MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1  MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61 VISLKALLEPTDED 74
          VISLKALLEPTD+D
Sbjct: 56 VISLKALLEPTDDD 69


>Medtr1g102900.1 | divergent CCT motif protein | HC |
          chr1:46513826-46507169 | 20130731
          Length = 328

 Score =  120 bits (302), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 5/74 (6%)

Query: 1  MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
          MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1  MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61 VISLKALLEPTDED 74
          VISLKALLEPTD+D
Sbjct: 56 VISLKALLEPTDDD 69


>Medtr1g102900.2 | divergent CCT motif protein | HC |
          chr1:46513826-46507169 | 20130731
          Length = 330

 Score =  120 bits (302), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/74 (81%), Positives = 63/74 (85%), Gaps = 5/74 (6%)

Query: 1  MNGGXXXXXXXXXFRSILDKPLKHLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQ 60
          MNGG         FRSILD+PL  LTEDDISQLTREDCRRFLK+KGMRRPSWNKSQAIQQ
Sbjct: 1  MNGGSTVS-----FRSILDRPLNQLTEDDISQLTREDCRRFLKDKGMRRPSWNKSQAIQQ 55

Query: 61 VISLKALLEPTDED 74
          VISLKALLEPTD+D
Sbjct: 56 VISLKALLEPTDDD 69