Miyakogusa Predicted Gene

Lj5g3v2045250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2045250.1 Non Characterized Hit- tr|Q1SKW3|Q1SKW3_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,71.67,0.000000000000007,coiled-coil,NULL,
NODE_72779_length_1196_cov_27.862040.path2.1
         (247 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g068700.1 | hypothetical protein | HC | chr4:25754576-2575...   428   e-120
Medtr1g102640.1 | hypothetical protein | HC | chr1:46379805-4638...   388   e-108
Medtr2g005760.1 | hypothetical protein | HC | chr2:303754-303560...    85   7e-17

>Medtr4g068700.1 | hypothetical protein | HC |
           chr4:25754576-25758173 | 20130731
          Length = 249

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 216/249 (86%), Positives = 226/249 (90%), Gaps = 2/249 (0%)

Query: 1   MSMGSESSWVGKKPVKRIGGMSDALSIASDLGFSVSSLP--THQEALQNPSTATGEKGED 58
           MSM +ESSWVG+K VKRIGGMSDALSIA+DLGFSVSS    TH+     P+T+TGEKGED
Sbjct: 1   MSMTNESSWVGRKAVKRIGGMSDALSIAADLGFSVSSPSSSTHESLHNPPTTSTGEKGED 60

Query: 59  LIKVLRELTTVQRKIADLQVELQGRKDDKNVAHLTHVSEMEKKIETLEWITTILKDVIQN 118
           LI+VLRELT+VQRKIADLQVELQGRKDDKNVAHLTHVSEMEKKIETL+ ITTILKDVI N
Sbjct: 61  LIRVLRELTSVQRKIADLQVELQGRKDDKNVAHLTHVSEMEKKIETLDRITTILKDVIHN 120

Query: 119 KDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQNFKEPPSV 178
           KDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQNFKEPPSV
Sbjct: 121 KDRIIARLQQPYSLDCIPVEAEYQKQFSELLMKAASDYGALTASVADFQWSQNFKEPPSV 180

Query: 179 WGEMLRPIPVALASCTRFFEAMSATRESFATLQKLRVGHVDSPVPRTPTSDPSQRLPGVS 238
           WGEMLRPIPVALASCTR+FEAMSA RESFA LQKLRVG  DS VP TP  DPSQRLPGVS
Sbjct: 181 WGEMLRPIPVALASCTRYFEAMSAKRESFAALQKLRVGQFDSSVPITPARDPSQRLPGVS 240

Query: 239 DSLTLPPSE 247
           DSLT  PSE
Sbjct: 241 DSLTSLPSE 249


>Medtr1g102640.1 | hypothetical protein | HC |
           chr1:46379805-46382400 | 20130731
          Length = 226

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/227 (85%), Positives = 206/227 (90%), Gaps = 1/227 (0%)

Query: 21  MSDALSIASDLGFSVSSLPTHQEALQNPSTATGEKGEDLIKVLRELTTVQRKIADLQVEL 80
           MSDALSIA+DLG+SVS+ P+ +E  QN S ATGEKGE LIKVLRELTTVQRKIADLQVEL
Sbjct: 1   MSDALSIATDLGYSVST-PSSKEGRQNSSPATGEKGEVLIKVLRELTTVQRKIADLQVEL 59

Query: 81  QGRKDDKNVAHLTHVSEMEKKIETLEWITTILKDVIQNKDRIIARLQQPYSLDCIPVEAE 140
           QGRKDDK VAHLTHVSEMEKKIETL  ITTILKDVIQNKDRIIARLQQPYSLDCIPVEA 
Sbjct: 60  QGRKDDKTVAHLTHVSEMEKKIETLSRITTILKDVIQNKDRIIARLQQPYSLDCIPVEAG 119

Query: 141 YQKQFSELLMKAASDYGALTASVADFQWSQNFKEPPSVWGEMLRPIPVALASCTRFFEAM 200
           YQKQFSELLMKAA+DYGALTASVADFQWSQNFKEPPSVWGEMLRPIPVALASCT +FEAM
Sbjct: 120 YQKQFSELLMKAANDYGALTASVADFQWSQNFKEPPSVWGEMLRPIPVALASCTWYFEAM 179

Query: 201 SATRESFATLQKLRVGHVDSPVPRTPTSDPSQRLPGVSDSLTLPPSE 247
           SATRES A LQKLRVG+ DSP+P+TPT D SQ +PGVSD LT  PS+
Sbjct: 180 SATRESLAALQKLRVGNFDSPLPKTPTRDSSQIVPGVSDYLTSLPSQ 226


>Medtr2g005760.1 | hypothetical protein | HC | chr2:303754-303560 |
           20130731
          Length = 64

 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/51 (80%), Positives = 42/51 (82%)

Query: 182 MLRPIPVALASCTRFFEAMSATRESFATLQKLRVGHVDSPVPRTPTSDPSQ 232
           MLRPIPVALASCTR+FEAMSA RESFA LQKLRVG   S VP TP  DPSQ
Sbjct: 1   MLRPIPVALASCTRYFEAMSAKRESFAALQKLRVGQFVSSVPITPARDPSQ 51